EST-SSR marker-based assay for the genetic purity assessment of safflower hybrids

Euphytica

Volumn 170, Issue 3, 2009, Pages 347-353

  Naresh, V ^a   Yamini, K N ^a,b   Rajendrakumar, P ^c   Kumar, V Dinesh ^a  

^a DIRECTORATE OF OILSEEDS RESEARCH   (India)

^b Regional Agricultural Research Station   (India)

^c DIRECTORATE OF RICE RESEARCH   (India)

Author keywords

EST SSR; Genetic purity; Hybrids; Molecular marker; PCR; Safflower

Indexed keywords

CARTHAMUS TINCTORIUS;

EID: 76149087129     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-009-9995-3     Document Type: Article

References (48)

1. Aggarwal RK, Hendre PS, Varshney RK, Bhat PR, Krishnakumar V, Singh L (2007) Identification, characterization and utilization of EST-derived genic microsatellite markers for genome analyses of coffee and related species. Theor Appl Genet 114: 359-372.
2. Anjani K (1998) DSH 129: the first safflower hybrid released for commercial cultivation. In: Proceedings of Vasantha Rao Naik Memorial National Seminar on "Heterosis: Its Commercial Exploitation", 10-11 March 1998, Nagpur, India, p 32.
3. Antonova TS, Guchetl SZ, Tchelustnikova TA, Ramasanova SA (2006) Development of marker system for identification and certification of sunflower lines and hybrids on the basis of SSR-analysis. Helia 29: 63-72.
4. Chen C, Zhou P, Choi YA, Huang S, Gmitter FG Jr (2006) Mining and characterizing microsatellites from citrus ESTs. Theor Appl Genet 112: 1248-1257.
5. Cordeiro GM, Casu R, McIntyre CL, Manners JM, Henry RJ (2001) Microsatellite markers from sugarcane (Saccharum spp.) ESTs cross transferable to erianthus and sorghum. Plant Sci 160: 1115-1123.
6. Doyle JJ, Doyle JN (1987) A rapid DNA isolation protocol for small quantity of fresh leaf tissue. Phytochem Bull 19: 11-15.
7. Edwards KJ, Barker JHA, Daly A, Jones C, Karp A (1996) Microsatellite libraries enriched for several microsatellite sequences in plants. Biotechniques 20: 758-760.
8. Fu YB, Peterson GW, Yu JK, Gao L, Jia J, Richards KW (2006) Impact of plant breeding on genetic diversity of the Canadian hard red spring wheat germplasm as revealed by EST-derived SSR markers. Theor Appl Genet 112: 1239-1247.
9. Gupta PK, Rustgi ES, Sharma ES, Singh R, Kumar EN, Balyan HS (2003) Transferable EST-SSR markers for the study of polymorphism and genetic diversity in bread wheat. Mol Genet Genomics 270: 315-323.
10. Han ZG, Guo WZ, Song XL, Zhang TZ (2004) Genetic mapping of EST-derived microsatellites from the diploid Gossypium arboretum in allotetraploid cotton. Mol Genet Genomics 272: 308-327.
11. Han Z, Wang C, Song X, Guo W, Gou J, Li C, Chen X, Zhang T (2006) Characteristics, development and mapping of Gossypium hirsutum derived EST-SSRs in allotetraploid cotton. Theor Appl Genet 112: 430-439.
12. Hegde DM (2006) Research achievements in safflower. All India Coordinated Research Project on Safflower, Directorate of Oilseeds Research, Hyderabad, p 111.
13. Hisano H, Sato S, Isobe S, Sasamoto S, Wada T, Matsuno A, Fujishiro T, Yamada M, Nakayama S, Nakamura Y, Watanabe S, Harada K, Tabata S (2007) Characterization of the soybean genome using EST-derived microsatellite markers. DNA Res 14: 271-281.
14. Ilbi H (2003) RAPD markers assisted varietal identification and genetic purity test in pepper, Capsicum annuum. Sci Hortic (Amsterdam) 97: 211-218.
15. Jianli L, Xiaohua S, Shouchun Z, Jianshe W (2006) Purity test of melon hybrid with SSR molecular markers. Mol Plant Breed 4: 23-26.
16. Johnson RC, Kisha TJ, Evans MA (2007) Characterizing safflower germplasm with AFLP molecular markers. Crop Sci 47: 1728-1736.
17. Kantety RV, La Rota M, Matthews DE, Sorrells ME (2002) Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Mol Biol 48: 501-510.
18. La Rota M, Kantety RV, Yu JK, Sorrells ME (2005) Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley. BMC Genomics 6: 23.
19. Listoe V, Hall J, Goodman A (2007) Development of microsatellite markers for Carthamus. Fifth Canadian Plant Genomics Workshop, Vancouver, Canada, Abstracts, p 52.
20. Liu L, Liu G, Gong Y, Dai W, Wang Y, Yu F, Ren Y (2007) Evaluation of genetic purity of F1 hybrid seeds in cabbage with RAPD, ISSR, SRAP and SSR markers. Hort Science 42: 724-727.
21. Liua LW, Wanga Y, Gonga YQ, Zhaob TM, Liua G, Lia XY, Yuc FM (2007) Assessment of genetic purity of tomato (Lycopersicon esculentum L.) hybrid using molecular markers. Sci Hortic (Amsterdam) 115: 7-12.
22. Mahasi MJ, Wachira FN, Pathak RS, Riungu TC (2009) Genetic polymorphism in exotic safflower (Carthamus tinctorious L.) using RAPD markers. J Plant Breed Crop Sci 1(1): 8-12.
23. Mao CX, Virmani SS, Kumar I (1996) Technological innovations to lower the costs of hybrid rice seed production. In Virmani SS et al. (eds) Advances in hybrid rice technology. Proceedings of Third International Symposium on Hybrid Rice, Hyderabad, India, 14-16 November 1996, Directorate of Rice Research, Hyderabad, India, pp 111-128.
24. Mingsheng W, Xihai J, Lei T, Baochun L (2006) Rapid and reliable purity identification of F1 hybrids of maize (Zea mays L.) using SSR markers. Mol Plant Breed 4: 381-384.
25. Nandakumar N, Singh AK, Sharma RK, Mohapatra T, Prabhu KV, Zaman FU (2004) Molecular fingerprinting of hybrids and assessment of genetic purity of hybrid seeds in rice using microsatellite markers. Euphytica 136: 257-264.
26. Ostrander EA, Jong PM, Rine J, Duyk G (1992) Construction of small-insert genomic DNA libraries highly enriched for microsatellite repeat sequences. Proc Natl Acad Sci USA 89: 3419-3423.
27. Pandey LB, Zehr BE, Reddy KVS, Babu SS, Raunt VK (2007) MRSA-521-First commercial CMS based hybrid in safflower. National Seminar on "Changing global vegetable oils scenario: Issues and Challenges before India", 29-31 January 2007, Directorate of Oilseeds Research, Hyderabad, India, pp 142-143.
28. Park YH, Alabady MS, Ulloa M, Sickler B, Wilkins TA, Yu J, Stelly DM, Kohel RJ, el-Shihy OM, Cantrell RG (2005) Genetic mapping of new cotton fiber loci using EST-derived microsatellites in an inter-specific recombinant inbred line cotton population. Mol Genet Genomics 274: 428-441.
29. Pashley CH, Ellis JR, McCauley DE, Burke JM (2006) EST databases as a source for molecular markers: lessons from Helianthus. J Hered 97: 381-388.
30. Pendse R, Malhotra S, Pawar SE, Krishna TG (2001) Use of DNA markers for identifying inbreds and hybrid seed in cotton (Gossypium hirsutum L.). Seed Sci Technol 29: 503-508.
31. Peng JH, Lapitan NL (2005) Characterization of EST-derived microsatellites in the wheat genome and development of eSSR markers. Funct Integr Genomics 5: 80-96.
32. Reddy PS (1997) Safflower cultivation in India: problems and prospects. Fourth International Safflower Conference, Italy, 2-7 June 1997, pp 32-35.
33. Sehgal D, Raina SN (2005) Genotyping safflower (Carthamus tinctorius) cultivars by DNA fingerprinting. Euphytica 146: 67-76.
34. Sehgal D, Rajpal VR, Raina SN, Sasanuma T, Sasakuma T (2009) Assaying polymorphism at DNA level for genetic diversity diagnostics of the safflower (Carthamus tinctorius L.) world germplasm resources. Genetica 135: 457-470.
35. Senthilvel S, Jayashree B, Mahalakshmi V, Sathish Kumar P, Nakka S, Nepolean T, Hash CT (2008) Development and mapping of simple sequence repeat markers for pearl millet from data mining of expressed sequence tags. BMC Plant Biol 8: 119.
36. Smith JSC, Register JC (1998) Genetic purity and testing technologies for seed quality: a company perspective. Seed Sci Res 8: 285-293.
37. Srinivas G, Satish K, Madhusudhana R, Seetharama N (2009) Exploration and mapping of microsatellite markers from subtracted drought stress ESTs in Sorghum bicolor (L.) Moench. Theor Appl Genet 118: 703-717.
38. Sundaram RM, Naveenkumar B, Biradar SK, Balachandran SM, Mishra B, IlyasAhmed M, Viraktamath BC, Ramesha MS, Sarma NP (2008) Identification of informative SSR markers capable of distinguishing hybrid rice parental lines and their utilization in seed purity assessment. Euphytica 163: 215-224.
39. Temnykh S, DeClerck G, Lukashova A, Lipovich L, Cartinhour S, McCouch S (2001) Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res 11: 1441-1452.
40. Varshney RK, Graner A, Sorrells ME (2005) Genic microsatellite markers in plants: features and applications. Trends Biotechnol 23: 48-55.
41. Varshney RK, Grosse I, Hahnel U, Siefken R, Prasad M, Stein N, Langridge P, Altschmied L, Graner A (2006) Genetic mapping and BAC assignment of EST-derived SSR markers shows non-uniform distribution of genes in the barley genome. Theor Appl Genet 113: 239-250.
42. Vijay D, Dadlani M, Ananda Kumar P, Panguluri SK (2009) Molecular marker analysis of differentially aged seeds of soybean and safflower. Plant Mol Biol Rep. doi: 10. 1007/s11105-008-0085-9.
43. Weiss EA (2000) Oilseed crops, 2nd edn. Blackwell, Oxford.
44. Yang YX, Wu W, Zheng YL, Chen L, Liu RJ, Huang CY (2007) Genetic diversity and relationships among safflower (Carthamus tinctorius L.) analyzed by inter-simple sequence repeats (ISSRs). Genet Resour Crop Evol 54: 1043-1051.
45. Yashitola J, Thirumurugan T, Sundaram RM, Naseerullah MK, Ramesha MS, Sarma NP, Sonti RV (2002) Assessment of purity of rice hybrids using microsatellite and STS markers. Crop Sci 42: 1369-1373.
46. Yazdi-Samadi B, Amiri RM, Ghannadha MR, Abd-Mishani C (2001) Detection of DNA polymorphism in landrace populations of safflower in Iran using RAPD-PCR technique. In: Bergman JW, Mundel HH (eds) Proceedings of the Fifth International Safflower Conference, Williams, ND, USA, p 163.
47. Yu JK, Dake TM, Singh S, Benscher D, Li W, Gill B, Sorrells ME (2004) Development and mapping of EST-derived simple sequence repeat markers for hexaploid wheat. Genome 47: 805-818.
48. Zhang L, Huang BB, Kai GY, Guo ML (2006) Analysis of intra-specific variation of Chinese Carthamus tinctorius L. using AFLP markers. Acta Pharm Sin 41: 91-96.