Identification of informative SSR markers capable of distinguishing hybrid rice parental lines and their utilization in seed purity assessment

Euphytica

Volumn 163, Issue 2, 2008, Pages 215-224

  Sundaram, R M ^a   Naveenkumar, B ^a   Biradar, S K ^a   Balachandran, S M ^a   Mishra, B ^a   Ilyasahmed, M ^a   Viraktamath, B C ^a   Ramesha, M S ^a   Sarma, N P ^a  

^a DIRECTORATE OF RICE RESEARCH   (India)

Author keywords

Genetic purity assessment; Grow out test; Hybrid rice; SSRs

Indexed keywords

ORYZA SATIVA (INDICA CULTIVAR-GROUP);

EID: 48349114771     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-007-9630-0     Document Type: Article

References (21)

1. GMM Bredemeijer RJ Cook MW Ganal R Peeters P Issac Y Noordijk S Rendell J Jackson MS Roder K Wendehake M Dijcks M Amelaine V Wickaert L Bertrand B Vosman 2002 Construction and testing of microsatellite database containing more than 500 tomato varieties Theor Appl Genet 105 1019 1026
2. SL Dellaporta J Wood JB Hicks 1983 A plant DNA minipreparation Plant Mol Biol Rep 1 19 21
3. A Karkousis AR Barr KJ Chalmers GA Ablett TA Holton RJ Henry P Lim P Langridge 2003 Potential of SSR markers for plant breeding and variety identification in Australian Barley germplasm Aust J Agric Res 54 1197 1210
4. Mao CX, Virmani SS, Kumar I (1996) Technological innovations to lower the costs of hybrid rice seed production. In: Virmani SS et al (eds) Advances in hybrid rice technology. Proceedings of Third International Symposium on Hybrid Rice, Directorate of Rice Research, Hyderabad, India
5. SR McCouch L Teytelman Y Xu KB Lobos K Clare M Walton B Fu R Maghirang Z Li Y Xing Q Zhang Z Kono M Yano R Fjellstrom G Declerck D Schneider S Cartinhour D D.Ware L Stein 2002 Development and Mapping of 2240 New SSR Markers for Rice (Oryza sativa L.) DNA Res 9 199 207
6. Mishra B, Viraktamath BC, Ilyas Ahmed M, Ramesha MS, Vijayakumar CHM (2003) Hybrid rice research and development in India. In: Virmani SS, Mao CX, Hardy B (eds) Hybrid rice for food security, poverty alleviation, and environmental protection. Proceedings of the 4th International Symposium on Hybrid Rice, 14-17 May 2002, Hanoi, Vietnam. Los Baños (Philippines), International Rice Research Institute, pp 265-283
7. N Nandakumar AK Singh RK Sharma T Mohapatra KV Prabhu FU Zaman 2004 Molecular fingerprinting of hybrids and assessment of genetic purity of hybrid seeds in rice using microsatellite markers Euphytica 136 257 264
8. Nas TM, Toledo RS, Li Z, Virmani SS (2002) Two-dimensional DNA sampling: a new strategy for assessing hybridity using molecular markers. Paper presented at the 4th International Symposium on Hybrid Rice, International Rice Research Institute, Hanoi, 14-17 May 2002
9. Rangaswamy M, Jayamani P (1996) Hybrid rice research in Tamil Nadu. In: Rangaswamy M (ed) Hybrid rice technology. School of Genetics, Tamil Nadu Agricultural University, Coimbatore, India
10. Sambrook J, Russell DW (2001) Molecular cloning: a laboratory manual, 3rd ed. Cold Spring Harbor, NY, USA, pp 5.40-5.46
11. JSC Smith JC III Register 1998 Genetic purity and testing technologies for seed quality: a company perspective Seed Sci Res 8 285 293
12. S Temnykh WD Park N Ayres S Cartinhour N Hauck L Lipvich YG Cho T Ishi SR McCouch 2000 Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.) Theor Appl Genet 100 697 712
13. S Temnykh G DeClerck A Lukashova L Lipovich S Cartinhour SR McCouch 2001 Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential Genome Res 11 1441 1452
14. UPOV-BMT (2002) BMT/36/10 Progress Report of the 36th Session of the Technical Committee, the technical working parties and working group on biochemical and molecular techniques and DNA-profiling in particular, Geneva
15. SS Virmani Ish Kumar 2004 Development and use of Hybrid rice technology to increase rice productivity in the tropics Intl Rice Res Newsl 29 10 20
16. 1 hybrids through SSR profiling of maternal and hybrid tissue Euphytica 124 29 34
17. J Yashitola T Thirumurugan RM Sundaram MK Naseerullah MS Ramesha NP Sarma RV Sonti 2002 Assessment of purity of rice hybrids using microsatellite and STS markers Crop Science 42 1369 1373
18. J Yashitola RM Sundaram SK Biradar T Thirumurugan MR Vishnupriya R Rajeshwari BC Viraktamath NP Sarma RV Sonti 2004 A sequence specific PCR marker for distinguishing rice lines on the basis of wild abortive cytoplasm from their cognate maintainer lines Crop Sci 44 920 924
19. LP Yuan 1977 The execution and theory of developing hybrid rice Zhonggue Nongye Kexue (Chin Agric Sci) 1 27 31
20. LS Zhang VL Clerc S Li D Zhang 2005 Establishment of an effective set of simple sequence repeat markers for sunflower variety identification and diversity assessment Euphytica 83 66 72
21. Zheng K, Huang N, Bennett J, Khush GS (1995) PCR-based marker assisted selection in rice breeding. IRRI Discussion Paper Series No. 12. International Rice Research Institute, Manila, The Philippines