-
1
-
-
34250773925
-
Listeria monocytogenes surface proteins: From genome predictions to function
-
Bierne, H.; Cossart, P. Listeria monocytogenes surface proteins: from genome predictions to function. Microbiol. Mol. Biol. Rev. 2007, 71 (2), 377-97.
-
(2007)
Microbiol. Mol. Biol. Rev
, vol.71
, Issue.2
, pp. 377-397
-
-
Bierne, H.1
Cossart, P.2
-
2
-
-
4344567816
-
Identification of Lactobacillus plantarum genes that are induced in the gastrointestinal tract of mice
-
Bron, P. A.; Grangette, C.; Mercenier, A.; de Vos, W. M.; Kleerebezem, M. Identification of Lactobacillus plantarum genes that are induced in the gastrointestinal tract of mice. J. Bacteriol. 2004, 186 (17), 5721-9.
-
(2004)
J. Bacteriol
, vol.186
, Issue.17
, pp. 5721-5729
-
-
Bron, P.A.1
Grangette, C.2
Mercenier, A.3
de Vos, W.M.4
Kleerebezem, M.5
-
3
-
-
33744528308
-
Technologies for bacterial surface proteomics
-
Cordwell, S. J. Technologies for bacterial surface proteomics. Curr. Opin. Microbiol. 2006, 9 (3), 320-9.
-
(2006)
Curr. Opin. Microbiol
, vol.9
, Issue.3
, pp. 320-329
-
-
Cordwell, S.J.1
-
4
-
-
0034066471
-
Membrane proteins and proteomics: Un amour impossible
-
Santoni, V.; Molloy, M.; Rabilloud, T. Membrane proteins and proteomics: un amour impossible. Electrophoresis 2000, 21 (6), 1054-70.
-
(2000)
Electrophoresis
, vol.21
, Issue.6
, pp. 1054-1070
-
-
Santoni, V.1
Molloy, M.2
Rabilloud, T.3
-
5
-
-
23744515352
-
Mass spectrometry of the M. smegmatis proteome: Protein expression levels correlate with function, operons, and codon bias
-
Wang, R.; Prince, J. T.; Marcotte, E. M. Mass spectrometry of the M. smegmatis proteome: protein expression levels correlate with function, operons, and codon bias. Genome Res. 2005, 15 (8), 1118-26.
-
(2005)
Genome Res
, vol.15
, Issue.8
, pp. 1118-1126
-
-
Wang, R.1
Prince, J.T.2
Marcotte, E.M.3
-
6
-
-
0037344041
-
Proteomic analysis of Lactococcus lactis, a lactic acid bacterium
-
Guillot, A.; Gitton, C.; Anglade, P.; Mistou, M. Y. Proteomic analysis of Lactococcus lactis, a lactic acid bacterium. Proteomics 2003, 3 (3), 337-54.
-
(2003)
Proteomics
, vol.3
, Issue.3
, pp. 337-354
-
-
Guillot, A.1
Gitton, C.2
Anglade, P.3
Mistou, M.Y.4
-
7
-
-
33845993904
-
Proteomic analysis of log to stationary growth phase Lactobacillus plantarum cells and a 2-DE database
-
Cohen, D. P.; Renes, J.; Bouwman, F. G.; Zoetendal, E. G.; Mariman, E.; de Vos, W. M.; Vaughan, E. E. Proteomic analysis of log to stationary growth phase Lactobacillus plantarum cells and a 2-DE database. Proteomics 2006, 6 (24), 6485-93.
-
(2006)
Proteomics
, vol.6
, Issue.24
, pp. 6485-6493
-
-
Cohen, D.P.1
Renes, J.2
Bouwman, F.G.3
Zoetendal, E.G.4
Mariman, E.5
de Vos, W.M.6
Vaughan, E.E.7
-
8
-
-
29544443526
-
Proteomic characterization of the acid tolerance response in Lactococcus lactis MG1363
-
Budin-Verneuil, A.; Pichereau, V.; Auffray, Y.; Ehrlich, D. S.; Maguin, E. Proteomic characterization of the acid tolerance response in Lactococcus lactis MG1363. Proteomics 2005, 5 (18), 4794-807.
-
(2005)
Proteomics
, vol.5
, Issue.18
, pp. 4794-4807
-
-
Budin-Verneuil, A.1
Pichereau, V.2
Auffray, Y.3
Ehrlich, D.S.4
Maguin, E.5
-
9
-
-
33645052431
-
Proteomic profiling of cell envelope-associated proteins from Staphylococcus aureus
-
Gatlin, C. L.; Pieper, R.; Huang, S. T.; Mongodin, E.; Gebregeorgis, E.; Parmar, P. P.; Clark, D. J.; Alami, H.; Papazisi, L.; Fleischmann, R. D.; Gill, S. R.; Peterson, S. N. Proteomic profiling of cell envelope-associated proteins from Staphylococcus aureus. Proteomics 2006, 6 (5), 1530-49.
-
(2006)
Proteomics
, vol.6
, Issue.5
, pp. 1530-1549
-
-
Gatlin, C.L.1
Pieper, R.2
Huang, S.T.3
Mongodin, E.4
Gebregeorgis, E.5
Parmar, P.P.6
Clark, D.J.7
Alami, H.8
Papazisi, L.9
Fleischmann, R.D.10
Gill, S.R.11
Peterson, S.N.12
-
10
-
-
25844455216
-
A comparative study of Bacillus cereus, Bacillus thuringiensis and Bacillus anthracis extracellular proteomes
-
Gohar, M.; Gilois, N.; Graveline, R.; Garreau, C.; Sanchis, V.; Lereclus, D. A comparative study of Bacillus cereus, Bacillus thuringiensis and Bacillus anthracis extracellular proteomes. Proteomics 2005, 5 (14), 3696-711.
-
(2005)
Proteomics
, vol.5
, Issue.14
, pp. 3696-3711
-
-
Gohar, M.1
Gilois, N.2
Graveline, R.3
Garreau, C.4
Sanchis, V.5
Lereclus, D.6
-
11
-
-
84872135257
-
Proteomic survey through secretome of Bacillus subtilis
-
Antelmann, H.; Van Dijl, J. M.; Bron, S.; Hecker, M. Proteomic survey through secretome of Bacillus subtilis. Methods Biochem. Anal. 2006, 49, 179-208.
-
(2006)
Methods Biochem. Anal
, vol.49
, pp. 179-208
-
-
Antelmann, H.1
Van Dijl, J.M.2
Bron, S.3
Hecker, M.4
-
12
-
-
34249748332
-
An improved strategy for selective and efficient enrichment of integral plasma membrane proteins of mycobacteria
-
Mattow, J.; Siejak, F.; Hagens, K.; Schmidt, F.; Koehler, C.; Treumann, A.; Schaible, U. E.; Kaufmann, S. H. An improved strategy for selective and efficient enrichment of integral plasma membrane proteins of mycobacteria. Proteomics 2007, 7 (10), 1687-1701.
-
(2007)
Proteomics
, vol.7
, Issue.10
, pp. 1687-1701
-
-
Mattow, J.1
Siejak, F.2
Hagens, K.3
Schmidt, F.4
Koehler, C.5
Treumann, A.6
Schaible, U.E.7
Kaufmann, S.H.8
-
13
-
-
23344432754
-
-
Cullen, P. A.; Xu, X.; Matsunaga, J.; Sanchez, Y.; Ko, A. I.; Haake, D. A.; Adler, B. Surfaceome of Leptospira spp. Infect. Immun. 2005, 73 (8), 4853-63.
-
Cullen, P. A.; Xu, X.; Matsunaga, J.; Sanchez, Y.; Ko, A. I.; Haake, D. A.; Adler, B. Surfaceome of Leptospira spp. Infect. Immun. 2005, 73 (8), 4853-63.
-
-
-
-
14
-
-
13844319215
-
Analysis of the Listeria cell wall proteome by two-dimensional nanoliquid chromatography coupled to mass spectrometry
-
Calvo, E.; Pucciarelli, M. G.; Bierne, H.; Cossart, P.; Albar, J. P.; Garcia-Del Portillo, F. Analysis of the Listeria cell wall proteome by two-dimensional nanoliquid chromatography coupled to mass spectrometry. Proteomics 2005, 5 (2), 433-43.
-
(2005)
Proteomics
, vol.5
, Issue.2
, pp. 433-443
-
-
Calvo, E.1
Pucciarelli, M.G.2
Bierne, H.3
Cossart, P.4
Albar, J.P.5
Garcia-Del Portillo, F.6
-
15
-
-
32344453260
-
Characterization and identification of vaccine candidate proteins through analysis of the group A Streptococcus surface proteome
-
Rodriguez-Ortega, M. J.; Norais, N.; Bensi, G.; Liberatori, S.; Capo, S.; Mora, M.; Scarselli, M.; Doro, F.; Ferrari, G.; Garaguso, I.; Maggi, T.; Neumann, A.; Covre, A.; Telford, J. L.; Grandi, G. Characterization and identification of vaccine candidate proteins through analysis of the group A Streptococcus surface proteome. Nat. Biotechnol. 2006, 24 (2), 191-7.
-
(2006)
Nat. Biotechnol
, vol.24
, Issue.2
, pp. 191-197
-
-
Rodriguez-Ortega, M.J.1
Norais, N.2
Bensi, G.3
Liberatori, S.4
Capo, S.5
Mora, M.6
Scarselli, M.7
Doro, F.8
Ferrari, G.9
Garaguso, I.10
Maggi, T.11
Neumann, A.12
Covre, A.13
Telford, J.L.14
Grandi, G.15
-
16
-
-
33947408802
-
Proteomic analysis and identification of Streptococcus pyogenes surface-associated proteins
-
Severin, A.; Nickbarg, E.; Wooters, J.; Quazi, S. A.; Matsuka, Y. V.; Murphy, E.; Moutsatsos, I. K.; Zagursky, R. J.; Olmsted, S. B. Proteomic analysis and identification of Streptococcus pyogenes surface-associated proteins. J. Bacteriol. 2007, 189 (5), 1514-22.
-
(2007)
J. Bacteriol
, vol.189
, Issue.5
, pp. 1514-1522
-
-
Severin, A.1
Nickbarg, E.2
Wooters, J.3
Quazi, S.A.4
Matsuka, Y.V.5
Murphy, E.6
Moutsatsos, I.K.7
Zagursky, R.J.8
Olmsted, S.B.9
-
17
-
-
20844432340
-
Identification of Mycobacterium tuberculosis H37Rv integral membrane proteins by one-dimensional gel electrophoresis and liquid chromatography electrospray ionization tandem mass spectrometry
-
Xiong, Y.; Chalmers, M. J.; Gao, F. P.; Cross, T. A.; Marshall, A. G. Identification of Mycobacterium tuberculosis H37Rv integral membrane proteins by one-dimensional gel electrophoresis and liquid chromatography electrospray ionization tandem mass spectrometry. J. Proteome Res. 2005, 4 (3), 855-61.
-
(2005)
J. Proteome Res
, vol.4
, Issue.3
, pp. 855-861
-
-
Xiong, Y.1
Chalmers, M.J.2
Gao, F.P.3
Cross, T.A.4
Marshall, A.G.5
-
18
-
-
21644461938
-
LaneSpector, a tool for membrane proteome profiling based on sodium dodecyl sulfate-polyacrylamide gel electrophoresis/liquid chromatography-tandem mass spectrometry analysis: Application to Listeria monocytogenes membrane proteins
-
Wehmhoner, D.; Dieterich, G.; Fischer, E.; Baumgartner, M.; Wehland, J.; Jansch, L. "LaneSpector", a tool for membrane proteome profiling based on sodium dodecyl sulfate-polyacrylamide gel electrophoresis/liquid chromatography-tandem mass spectrometry analysis: application to Listeria monocytogenes membrane proteins. Electrophoresis 2005, 26 (12), 2450-60.
-
(2005)
Electrophoresis
, vol.26
, Issue.12
, pp. 2450-2460
-
-
Wehmhoner, D.1
Dieterich, G.2
Fischer, E.3
Baumgartner, M.4
Wehland, J.5
Jansch, L.6
-
19
-
-
34248683957
-
A widespread picture of the Streptococcus thermophilus proteome by cell lysate fractionation and gel-based/gel-free approaches
-
Salzano, A. M.; Arena, S.; Renzone, G.; D'Ambrosio, C.; Rullo, R.; Bruschi, M.; Ledda, L.; Maglione, G.; Candiano, G.; Ferrara, L.; Scaloni, A. A widespread picture of the Streptococcus thermophilus proteome by cell lysate fractionation and gel-based/gel-free approaches. Proteomics 2007, 7 (9), 1430-33.
-
(2007)
Proteomics
, vol.7
, Issue.9
, pp. 1430-1433
-
-
Salzano, A.M.1
Arena, S.2
Renzone, G.3
D'Ambrosio, C.4
Rullo, R.5
Bruschi, M.6
Ledda, L.7
Maglione, G.8
Candiano, G.9
Ferrara, L.10
Scaloni, A.11
-
20
-
-
26844559000
-
Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein
-
Ishihama, Y.; Oda, Y.; Tabata, T.; Sato, T.; Nagasu, T.; Rappsilber, J.; Mann, M. Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein. Mol. Cell. Proteomics 2005, 4 (9), 1265-72.
-
(2005)
Mol. Cell. Proteomics
, vol.4
, Issue.9
, pp. 1265-1272
-
-
Ishihama, Y.1
Oda, Y.2
Tabata, T.3
Sato, T.4
Nagasu, T.5
Rappsilber, J.6
Mann, M.7
-
21
-
-
3242731195
-
A model for random sampling and estimation of relative protein abundance in shotgun proteomics
-
Liu, H.; Sadygov, R. G.; Yates, J. R., III. A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem. 2004, 76 (14), 4193-201.
-
(2004)
Anal. Chem
, vol.76
, Issue.14
, pp. 4193-4201
-
-
Liu, H.1
Sadygov, R.G.2
Yates III, J.R.3
-
22
-
-
33748319353
-
Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae
-
Zybailov, B.; Mosley, A. L.; Sardiu, M. E.; Coleman, M. K.; Florens, L.; Washburn, M. P. Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae. J. Proteome Res. 2006, 5 (9), 2339-47.
-
(2006)
J. Proteome Res
, vol.5
, Issue.9
, pp. 2339-2347
-
-
Zybailov, B.1
Mosley, A.L.2
Sardiu, M.E.3
Coleman, M.K.4
Florens, L.5
Washburn, M.P.6
-
23
-
-
42549129468
-
Proteomic investigation of the adaptation of Lactococcus lactis to the mouse digestive tract
-
Roy, K.; Meyrand, M.; Corthier, G.; Monnet, V.; Mistou, M.-Y. Proteomic investigation of the adaptation of Lactococcus lactis to the mouse digestive tract. Proteomics 2008, 8, 1661-76.
-
(2008)
Proteomics
, vol.8
, pp. 1661-1676
-
-
Roy, K.1
Meyrand, M.2
Corthier, G.3
Monnet, V.4
Mistou, M.-Y.5
-
24
-
-
67649621174
-
Lactococcus lactis as a live vector for mucosal delivery of therapeutic proteins
-
Bermudez-Humaran, L. G. Lactococcus lactis as a live vector for mucosal delivery of therapeutic proteins. Hum. Vaccines 2009, 5 (4), 264-7.
-
(2009)
Hum. Vaccines
, vol.5
, Issue.4
, pp. 264-267
-
-
Bermudez-Humaran, L.G.1
-
25
-
-
33746809569
-
AGMIAL: Implementing an annotation strategy for prokaryote genomes as a distributed system
-
Bryson, K.; Loux, V.; Bossy, R.; Nicolas, P.; Chaillou, S.; van de Guchte, M.; Penaud, S.; Maguin, E.; Hoebeke, M.; Bessieres, P.; Gibrat, J. F. AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system. Nucleic Acids Res. 2006, 34 (12), 3533-45.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.12
, pp. 3533-3545
-
-
Bryson, K.1
Loux, V.2
Bossy, R.3
Nicolas, P.4
Chaillou, S.5
van de Guchte, M.6
Penaud, S.7
Maguin, E.8
Hoebeke, M.9
Bessieres, P.10
Gibrat, J.F.11
-
26
-
-
15844431346
-
PSORTb v.2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis
-
Gardy, M. R.; Laird, F.; Chen, F.; Rey, S.; Walsh, C. J.; Ester, M.; Brinkman, F. S. L. PSORTb v.2.0: expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis. Bioinformatics 2005, 21 (5), 617-23.
-
(2005)
Bioinformatics
, vol.21
, Issue.5
, pp. 617-623
-
-
Gardy, M.R.1
Laird, F.2
Chen, F.3
Rey, S.4
Walsh, C.J.5
Ester, M.6
Brinkman, F.S.L.7
-
27
-
-
34248531753
-
Locating proteins in the cell using TargetP, SignalP and related tools
-
Emanuelsson, O.; Brunak, S.; von Heijne, G.; Nielsen, H. Locating proteins in the cell using TargetP, SignalP and related tools. Nature protocols 2007, 2, 953-71.
-
(2007)
Nature protocols
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
28
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
Krogh, A.; Larsson, B.; von Heijne, G.; Soonhammer, E. L. L. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 2001, 305 (3), 567-80.
-
(2001)
J. Mol. Biol
, vol.305
, Issue.3
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
von Heijne, G.3
Soonhammer, E.L.L.4
-
29
-
-
0041341888
-
Prediction of lipoprotein signal peptides in Gram negative bacteria
-
Juncker, A. S.; Willenbrock, H.; von Heijne, G.; Nielsen, H.; Brunak, S.; Krogh, A. Prediction of lipoprotein signal peptides in Gram negative bacteria. Protein Sci. 2003, 12 (8), 1652-62.
-
(2003)
Protein Sci
, vol.12
, Issue.8
, pp. 1652-1662
-
-
Juncker, A.S.1
Willenbrock, H.2
von Heijne, G.3
Nielsen, H.4
Brunak, S.5
Krogh, A.6
-
30
-
-
0035021812
-
The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403
-
Bolotin, A.; Wincker, P.; Mauger, S.; Jaillon, O.; Malarme, K.; Weissenbach, J.; Ehrlich, S. D.; Sorokin, A. The complete genome sequence of the lactic acid bacterium Lactococcus lactis ssp. lactis IL1403. Genome Res. 2001, 11 (5), 731-53.
-
(2001)
Genome Res
, vol.11
, Issue.5
, pp. 731-753
-
-
Bolotin, A.1
Wincker, P.2
Mauger, S.3
Jaillon, O.4
Malarme, K.5
Weissenbach, J.6
Ehrlich, S.D.7
Sorokin, A.8
-
31
-
-
0021209585
-
Two plasmid-determined restriction and modification systems in Streptococcus lactis
-
Chopin, A.; Chopin, M. C.; Moillo-Batt, A.; Langella, P. Two plasmid-determined restriction and modification systems in Streptococcus lactis. Plasmid 1984, 11 (3), 260-3.
-
(1984)
Plasmid
, vol.11
, Issue.3
, pp. 260-263
-
-
Chopin, A.1
Chopin, M.C.2
Moillo-Batt, A.3
Langella, P.4
-
32
-
-
0033135813
-
Community level physiological profile of soil bacteria unaffected by extraction method
-
Mayr, C.; Winding, A.; Hendriksen, N. B. Community level physiological profile of soil bacteria unaffected by extraction method. J. Microbiol. Methods 1999, 36 (1-2), 29-33.
-
(1999)
J. Microbiol. Methods
, vol.36
, Issue.1-2
, pp. 29-33
-
-
Mayr, C.1
Winding, A.2
Hendriksen, N.B.3
-
33
-
-
0001972373
-
Recovery of bacterial cells from soil
-
van Elsas, J. D, Trevors, J. T, Eds, Springer Verlag: Heidelberg
-
Bakken, L. R.; Lindahl, V. Recovery of bacterial cells from soil. In Nucleic Acids in the Environment: Methods and Applications 1995; van Elsas, J. D., Trevors, J. T., Eds.; Springer Verlag: Heidelberg, 1995; pp 9-27.
-
(1995)
Nucleic Acids in the Environment: Methods and Applications 1995
, pp. 9-27
-
-
Bakken, L.R.1
Lindahl, V.2
-
34
-
-
0345471372
-
Quorum sensing-controlled gene expression in lactic acid bacteria
-
Kuipers, O. P.; de Ruyter, P. G.; Kleerebezem, M.; de Vos, W. Quorum sensing-controlled gene expression in lactic acid bacteria. J. Biotechnol. 1998, 64, 15-21.
-
(1998)
J. Biotechnol
, vol.64
, pp. 15-21
-
-
Kuipers, O.P.1
de Ruyter, P.G.2
Kleerebezem, M.3
de Vos, W.4
-
35
-
-
0033812734
-
Improved vectors for nisin-controlled expression in gram-positive bacteria
-
Bryan, E. M.; Bae, T.; Kleerebezem, M.; Dunny, G. M. Improved vectors for nisin-controlled expression in gram-positive bacteria. Plasmid 2000, 44 (2), 183-90.
-
(2000)
Plasmid
, vol.44
, Issue.2
, pp. 183-190
-
-
Bryan, E.M.1
Bae, T.2
Kleerebezem, M.3
Dunny, G.M.4
-
36
-
-
32044435369
-
Proteomic signature of Lactococcus lactis NCDO763 cultivated in milk
-
Gitton, C.; Meyrand, M.; Wang, J.; Caron, C.; Trubuil, A.; Guillot, A.; Mistou, M. Y. Proteomic signature of Lactococcus lactis NCDO763 cultivated in milk. Appl. Environ. Microbiol. 2005, 71 (11), 7152-63.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, Issue.11
, pp. 7152-7163
-
-
Gitton, C.1
Meyrand, M.2
Wang, J.3
Caron, C.4
Trubuil, A.5
Guillot, A.6
Mistou, M.Y.7
-
37
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford, M. M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 1976, 72, 248-54.
-
(1976)
Anal. Biochem
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
38
-
-
44649164495
-
Monitoring of changes in the membrane proteome during stationary phase adaptation of Bacillus subtilis using in vivo labeling techniques
-
Dreisbach, A.; Otto, A.; Becher, D.; Hammer, E.; Teumer, A.; Gouw, J. W.; Hecker, M.; Volker, U. Monitoring of changes in the membrane proteome during stationary phase adaptation of Bacillus subtilis using in vivo labeling techniques. Proteomics 2008, 8 (10), 2062-76.
-
(2008)
Proteomics
, vol.8
, Issue.10
, pp. 2062-2076
-
-
Dreisbach, A.1
Otto, A.2
Becher, D.3
Hammer, E.4
Teumer, A.5
Gouw, J.W.6
Hecker, M.7
Volker, U.8
-
40
-
-
33646253240
-
Modern Applied Statistics with S
-
4th ed, Springer-Verlag: New York
-
Venables, W. N.; Ripley, B. D. Modern Applied Statistics with S. In Statistics and Computing, 4th ed.; Springer-Verlag: New York, 2002.
-
(2002)
Statistics and Computing
-
-
Venables, W.N.1
Ripley, B.D.2
-
42
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini, Y.; Hochberg, Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B 1995, 57.
-
(1995)
J. R. Stat. Soc. B
, pp. 57
-
-
Benjamini, Y.1
Hochberg, Y.2
-
43
-
-
34047109199
-
Statistics for proteomics: Experimental design and 2-DE differential analysis
-
Chich, J. F.; David, O.; Villers, F.; Schaeffer, B.; Lutomski, D.; Huet, S. Statistics for proteomics: experimental design and 2-DE differential analysis. J. Chromatogr., B: Anal. Technol. Biomed. Life Sci. 2007, 849 (1-2), 261-72.
-
(2007)
J. Chromatogr., B: Anal. Technol. Biomed. Life Sci
, vol.849
, Issue.1-2
, pp. 261-272
-
-
Chich, J.F.1
David, O.2
Villers, F.3
Schaeffer, B.4
Lutomski, D.5
Huet, S.6
-
44
-
-
34948877579
-
Proteomic analysis of cell envelope from Staphylococcus xylosus C2a, a coagulase-negative staphylococcus
-
Planchon, S.; Chambon, C.; Desvaux, M.; Chafsey, I.; Leroy, S.; Talon, R.; Hebraud, M. Proteomic analysis of cell envelope from Staphylococcus xylosus C2a, a coagulase-negative staphylococcus. J. Proteome Res. 2007, 6 (9), 3566-80.
-
(2007)
J. Proteome Res
, vol.6
, Issue.9
, pp. 3566-3580
-
-
Planchon, S.1
Chambon, C.2
Desvaux, M.3
Chafsey, I.4
Leroy, S.5
Talon, R.6
Hebraud, M.7
-
45
-
-
20444471564
-
-
Steen, A.; Buist, G.; Horsburgh, G. J.; Venema, G.; Kuipers, O. P.; Foster, S. J.; Kok, J. AcmA of Lactococcus lactis is an N-acetylglucosaminidase with an optimal number of LysM domains for proper functioning. FEBS J. 2005, 272 (11), 2854-68.
-
Steen, A.; Buist, G.; Horsburgh, G. J.; Venema, G.; Kuipers, O. P.; Foster, S. J.; Kok, J. AcmA of Lactococcus lactis is an N-acetylglucosaminidase with an optimal number of LysM domains for proper functioning. FEBS J. 2005, 272 (11), 2854-68.
-
-
-
-
46
-
-
33746891446
-
Penicillin binding proteins: Key players in bacterial cell cycle and drug resistance processes
-
Macheboeuf, P.; Contreras-Martel, C.; Job, V.; Dideberg, O.; Dessen, A. Penicillin binding proteins: key players in bacterial cell cycle and drug resistance processes. FEMS Microbiol. Rev. 2006, 30 (5), 673-91.
-
(2006)
FEMS Microbiol. Rev
, vol.30
, Issue.5
, pp. 673-691
-
-
Macheboeuf, P.1
Contreras-Martel, C.2
Job, V.3
Dideberg, O.4
Dessen, A.5
-
47
-
-
33846926952
-
C-terminal WxL domain mediates cell wall binding in Enterococcus faecalis and other gram-positive bacteria
-
Brinster, S.; Furlan, S.; Serror, P. C-terminal WxL domain mediates cell wall binding in Enterococcus faecalis and other gram-positive bacteria. J. Bacteriol. 2007, 189 (4), 1244-53.
-
(2007)
J. Bacteriol
, vol.189
, Issue.4
, pp. 1244-1253
-
-
Brinster, S.1
Furlan, S.2
Serror, P.3
-
48
-
-
33846133955
-
Computational prediction of proteotypic peptides for quantitative proteomics
-
Mallick, P.; Schirle, M.; Chen, S.; Flory, M. R.; Lee, H.; Martin, D.; Ranish, J.; Raught, B.; Schmitt, R.; Werner, T.; Kuster, B.; Aebersold, R. Computational prediction of proteotypic peptides for quantitative proteomics. Nat. Biotechnol. 2007, 25 (1), 125-31.
-
(2007)
Nat. Biotechnol
, vol.25
, Issue.1
, pp. 125-131
-
-
Mallick, P.1
Schirle, M.2
Chen, S.3
Flory, M.R.4
Lee, H.5
Martin, D.6
Ranish, J.7
Raught, B.8
Schmitt, R.9
Werner, T.10
Kuster, B.11
Aebersold, R.12
-
49
-
-
33846165487
-
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
-
Lu, P.; Vogel, C.; Wang, R.; Yao, X.; Marcotte, E. M. Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Nat. Biotechnol. 2007, 25 (1), 117-24.
-
(2007)
Nat. Biotechnol
, vol.25
, Issue.1
, pp. 117-124
-
-
Lu, P.1
Vogel, C.2
Wang, R.3
Yao, X.4
Marcotte, E.M.5
-
50
-
-
0037970862
-
HtrA is a key factor in the response to specific stress conditions in Lactococcus lactis
-
Foucaud-Scheunemann, C.; Poquet, I. HtrA is a key factor in the response to specific stress conditions in Lactococcus lactis. FEMS Microbiol. Lett. 2003, 224 (1), 53-9.
-
(2003)
FEMS Microbiol. Lett
, vol.224
, Issue.1
, pp. 53-59
-
-
Foucaud-Scheunemann, C.1
Poquet, I.2
-
51
-
-
15744375117
-
Lactococcus lactis uses MscL as its principal mechanosensitive channel
-
Folgering, J. H.; Moe, P. C.; Schuurman-Wolters, G. K.; Blount, P.; Poolman, B. Lactococcus lactis uses MscL as its principal mechanosensitive channel. J. Biol. Chem. 2005, 280 (10), 8784-92.
-
(2005)
J. Biol. Chem
, vol.280
, Issue.10
, pp. 8784-8792
-
-
Folgering, J.H.1
Moe, P.C.2
Schuurman-Wolters, G.K.3
Blount, P.4
Poolman, B.5
-
52
-
-
2442568591
-
Setting up standards and a reference map for the alkaline proteome of the Gram-positive bacterium Lactococcus lactis
-
Drews, O.; Reil, G.; Parlar, H.; Görg, A. Setting up standards and a reference map for the alkaline proteome of the Gram-positive bacterium Lactococcus lactis. Proteomics 2004, 4, 1293-1304.
-
(2004)
Proteomics
, vol.4
, pp. 1293-1304
-
-
Drews, O.1
Reil, G.2
Parlar, H.3
Görg, A.4
-
53
-
-
33745973006
-
Proteomic analysis of Brucella abortus cell envelope and indentification of immungenic candidate proteins for vaccine development
-
Connolly, J. P.; Comerci, C.; Alefantis, T. G.; Walz, A.; Quan, M.; Chafin, R.; Grewal, P.; Mujer, C. V.; Ugalde, R. A.; DelVecchio, V. G. Proteomic analysis of Brucella abortus cell envelope and indentification of immungenic candidate proteins for vaccine development. Proteomics 2006, 6, 3767-3780.
-
(2006)
Proteomics
, vol.6
, pp. 3767-3780
-
-
Connolly, J.P.1
Comerci, C.2
Alefantis, T.G.3
Walz, A.4
Quan, M.5
Chafin, R.6
Grewal, P.7
Mujer, C.V.8
Ugalde, R.A.9
DelVecchio, V.G.10
-
54
-
-
0026595773
-
Localization of peptidases in lactococci
-
Tan, P. S.; Chapot-Chartier, M. P.; Pos, K. M.; Rousseau, M.; Boquien, C. Y.; Gripon, J. C.; Konings, W. N. Localization of peptidases in lactococci. Appl. Environ. Microbiol. 1992, 58 (1), 285-90.
-
(1992)
Appl. Environ. Microbiol
, vol.58
, Issue.1
, pp. 285-290
-
-
Tan, P.S.1
Chapot-Chartier, M.P.2
Pos, K.M.3
Rousseau, M.4
Boquien, C.Y.5
Gripon, J.C.6
Konings, W.N.7
-
55
-
-
27644500162
-
Non-classical protein secretion in bacteria
-
Bendtsen, J. D.; Kiemer, L.; Fausboll, A.; Brunak, S. Non-classical protein secretion in bacteria. BMC Microbiol. 2005, 5, 58.
-
(2005)
BMC Microbiol
, vol.5
, pp. 58
-
-
Bendtsen, J.D.1
Kiemer, L.2
Fausboll, A.3
Brunak, S.4
-
56
-
-
1842431723
-
Cell surface-associated elongation factor Tu mediates the attachment of Lactobacillus johnsonii NCC533 (La1) to human intestinal cells and mucins
-
Granato, D.; Bergonzelli, G. E.; Pridmore, R. D.; Marvin, L.; Rouvet, M.; Corthesy-Theulaz, I. E. Cell surface-associated elongation factor Tu mediates the attachment of Lactobacillus johnsonii NCC533 (La1) to human intestinal cells and mucins. Infect. Immun. 2004, 72 (4), 2160-9.
-
(2004)
Infect. Immun
, vol.72
, Issue.4
, pp. 2160-2169
-
-
Granato, D.1
Bergonzelli, G.E.2
Pridmore, R.D.3
Marvin, L.4
Rouvet, M.5
Corthesy-Theulaz, I.E.6
-
57
-
-
27844471239
-
-
Jeffery, C. J. Mass spectrometry and the search for moonlighting proteins. Mass Spectrom. Rev. 2005, 24 (6), 772-82.
-
Jeffery, C. J. Mass spectrometry and the search for moonlighting proteins. Mass Spectrom. Rev. 2005, 24 (6), 772-82.
-
-
-
-
58
-
-
34548462446
-
Protein abundance ratios for global studies of prokaryotes
-
Xia, Q.; Hendrickson, E. L.; Wang, T.; Lamont, R. J.; Leigh, J. A.; Hackett, M. Protein abundance ratios for global studies of prokaryotes. Proteomics 2007, 7 (16), 2904-19.
-
(2007)
Proteomics
, vol.7
, Issue.16
, pp. 2904-2919
-
-
Xia, Q.1
Hendrickson, E.L.2
Wang, T.3
Lamont, R.J.4
Leigh, J.A.5
Hackett, M.6
-
59
-
-
37049009528
-
Quantitative proteomics of intracellular Porphyromonas gingivalis
-
Xia, Q.; Wang, T.; Taub, F.; Park, Y.; Capestany, C. A.; Lamont, R. J.; Hackett, M. Quantitative proteomics of intracellular Porphyromonas gingivalis. Proteomics 2007, 7 (23), 4323-37.
-
(2007)
Proteomics
, vol.7
, Issue.23
, pp. 4323-4337
-
-
Xia, Q.1
Wang, T.2
Taub, F.3
Park, Y.4
Capestany, C.A.5
Lamont, R.J.6
Hackett, M.7
-
60
-
-
38649095599
-
An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data
-
Mueller, L. N.; Brusniak, M. Y.; Mani, D. R.; Aebersold, R. An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data. J. Proteome Res. 2008, 7 (1), 51-61.
-
(2008)
J. Proteome Res
, vol.7
, Issue.1
, pp. 51-61
-
-
Mueller, L.N.1
Brusniak, M.Y.2
Mani, D.R.3
Aebersold, R.4
-
61
-
-
17044414554
-
Prebiotics and other microbial substrates for gut functionality
-
Ouwehand, A. C.; Derrien, M.; de Vos, W.; Tiihonen, K.; Rautonen, N. Prebiotics and other microbial substrates for gut functionality. Curr. Opin. Biotechnol. 2005, 16 (2), 212-7.
-
(2005)
Curr. Opin. Biotechnol
, vol.16
, Issue.2
, pp. 212-217
-
-
Ouwehand, A.C.1
Derrien, M.2
de Vos, W.3
Tiihonen, K.4
Rautonen, N.5
-
62
-
-
35648954521
-
Metabolic adaptation of Lactococcus lactis in the digestive tract: The example of response to lactose
-
Roy, K.; Anba, J.; Corthier, G.; Rigottier-Gois, L.; Monnet, V.; Mistou, M. Y. Metabolic adaptation of Lactococcus lactis in the digestive tract: the example of response to lactose. J. Mol. Microbiol. Biotechnol. 2008, 14 (1-3), 137-44.
-
(2008)
J. Mol. Microbiol. Biotechnol
, vol.14
, Issue.1-3
, pp. 137-144
-
-
Roy, K.1
Anba, J.2
Corthier, G.3
Rigottier-Gois, L.4
Monnet, V.5
Mistou, M.Y.6
-
63
-
-
2442611939
-
Carbon nutrition of Escherichia coli in the mouse intestine
-
Chang, D. E.; Smalley, D. J.; Tucker, D. L.; Leatham, M. P.; Norris, W. E.; Stevenson, S. J.; Anderson, A. B.; Grissom, J. E.; Laux, D. C.; Cohen, P. S.; Conway, T. Carbon nutrition of Escherichia coli in the mouse intestine. Proc. Natl. Acad. Sci. U.S.A. 2004, 101 (19), 7427-32.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A
, vol.101
, Issue.19
, pp. 7427-7432
-
-
Chang, D.E.1
Smalley, D.J.2
Tucker, D.L.3
Leatham, M.P.4
Norris, W.E.5
Stevenson, S.J.6
Anderson, A.B.7
Grissom, J.E.8
Laux, D.C.9
Cohen, P.S.10
Conway, T.11
-
64
-
-
18244373943
-
Transcriptome analysis of the progressive adaptation of Lactococcus lactis to carbon starvation
-
Redon, E.; Loubiere, P.; Cocaign-Bousquet, M. Transcriptome analysis of the progressive adaptation of Lactococcus lactis to carbon starvation. J. Bacteriol. 2005, 187 (10), 3589-92.
-
(2005)
J. Bacteriol
, vol.187
, Issue.10
, pp. 3589-3592
-
-
Redon, E.1
Loubiere, P.2
Cocaign-Bousquet, M.3
-
65
-
-
42349084634
-
Responses of Bacillus subtilis to hypotonic challenges: Physiological contributions of mechanosensitive channels to cellular survival
-
Hoffmann, T.; Boiangiu, C.; Moses, S.; Bremer, E. Responses of Bacillus subtilis to hypotonic challenges: physiological contributions of mechanosensitive channels to cellular survival. Appl. Environ. Microbiol. 2008, 74 (8), 2454-60.
-
(2008)
Appl. Environ. Microbiol
, vol.74
, Issue.8
, pp. 2454-2460
-
-
Hoffmann, T.1
Boiangiu, C.2
Moses, S.3
Bremer, E.4
-
66
-
-
0017187684
-
Abundance and membrane association of elongation factor Tu in E. coli
-
Jacobson, G. R.; Rosenbusch, J. P. Abundance and membrane association of elongation factor Tu in E. coli. Nature 1976, 261 (5555), 23-6.
-
(1976)
Nature
, vol.261
, Issue.5555
, pp. 23-26
-
-
Jacobson, G.R.1
Rosenbusch, J.P.2
-
67
-
-
0032932216
-
Disruption and analysis of the clpB, clpC, and clpE genes in Lactococcus lactis: ClpE, a new Clp family in gram-positive bacteria
-
Ingmer, H.; Vogensen, F. K.; Hammer, K.; Kilstrup, M. Disruption and analysis of the clpB, clpC, and clpE genes in Lactococcus lactis: ClpE, a new Clp family in gram-positive bacteria. J. Bacteriol. 1999, 181 (7), 2075-83.
-
(1999)
J. Bacteriol
, vol.181
, Issue.7
, pp. 2075-2083
-
-
Ingmer, H.1
Vogensen, F.K.2
Hammer, K.3
Kilstrup, M.4
-
68
-
-
0033905692
-
Inactivation of the stress- and starvation-inducible gls24 operon has a pleiotrophic effect on cell morphology, stress sensitivity, and gene expression in Enterococcus faecalis
-
Giard, J. C.; Rince, A.; Capiaux, H.; Auffray, Y.; Hartke, A. Inactivation of the stress- and starvation-inducible gls24 operon has a pleiotrophic effect on cell morphology, stress sensitivity, and gene expression in Enterococcus faecalis. J. Bacteriol. 2000, 182 (16), 4512-20.
-
(2000)
J. Bacteriol
, vol.182
, Issue.16
, pp. 4512-4520
-
-
Giard, J.C.1
Rince, A.2
Capiaux, H.3
Auffray, Y.4
Hartke, A.5
-
69
-
-
0036671494
-
Expression of a P-type Ca2+-transport ATPase in Bacillus subtilis during sporulation
-
Raeymaekers, L.; Wuytack, E.; Willems, I.; Michiels, C. W.; Wuytack, F. Expression of a P-type Ca2+-transport ATPase in Bacillus subtilis during sporulation. Cell Calcium 2002, 32, 93-103.
-
(2002)
Cell Calcium
, vol.32
, pp. 93-103
-
-
Raeymaekers, L.1
Wuytack, E.2
Willems, I.3
Michiels, C.W.4
Wuytack, F.5
-
70
-
-
0036211187
-
Salt stress proteins induced in Listeria monocytogenes
-
Duche, O.; Tremoulet, F.; Glaser, P.; Labadie, J. Salt stress proteins induced in Listeria monocytogenes. Appl. Environ. Microbiol. 2002, 68 (4), 1491-8.
-
(2002)
Appl. Environ. Microbiol
, vol.68
, Issue.4
, pp. 1491-1498
-
-
Duche, O.1
Tremoulet, F.2
Glaser, P.3
Labadie, J.4
-
71
-
-
33748783782
-
Identification of an essential gene of Listeria monocytogenes involved in teichoic acid biogenesis
-
Dubail, I.; Bigot, A.; Lazarevic, V.; Soldo, B.; Euphrasie, D.; Dupuis, M.; Charbit, A. Identification of an essential gene of Listeria monocytogenes involved in teichoic acid biogenesis. J. Bacteriol. 2006, 188 (18), 6580-91.
-
(2006)
J. Bacteriol
, vol.188
, Issue.18
, pp. 6580-6591
-
-
Dubail, I.1
Bigot, A.2
Lazarevic, V.3
Soldo, B.4
Euphrasie, D.5
Dupuis, M.6
Charbit, A.7
-
72
-
-
0030893080
-
The isolation of novel heat shock genes in Lactococcus lactis using RNA subtractive hybridization
-
Arnau, J.; Sorensen, K. I. The isolation of novel heat shock genes in Lactococcus lactis using RNA subtractive hybridization. Gene 1997, 188 (2), 229-34.
-
(1997)
Gene
, vol.188
, Issue.2
, pp. 229-234
-
-
Arnau, J.1
Sorensen, K.I.2
|