-
1
-
-
0346659780
-
Fitness distance correlation analysis: An instructive counterexample
-
East Lansing, MI, 19-23 July, San Francisco, CA: Morgan Kaufmann
-
Altenberg, L. 1997 Fitness distance correlation analysis: an instructive counterexample. In Proc. 7th Int. Conf. on Genetic Algorithms, East Lansing, MI, 19-23 July 1997, pp. 57-64. San Francisco, CA: Morgan Kaufmann.
-
(1997)
Proc. 7th Int. Conf. on Genetic Algorithms
, pp. 57-64
-
-
Altenberg, L.1
-
2
-
-
67649982744
-
Diversity and complexity in DNA recognition by transcription factors
-
doi:10.1126/science.1162327
-
Badis, G. et al. 2009 Diversity and complexity in DNA recognition by transcription factors. Science 324, 1720-1723. (doi:10.1126/science.1162327)
-
(2009)
Science
, vol.324
, pp. 1720-1723
-
-
Badis, G.1
-
3
-
-
0030596731
-
Approximate scaling properties of RNA free energy landscapes
-
doi:10.1006/jtbi.1996. 0132
-
Baskaran, S., Stadler, P. F. & Schuster, P. 1996 Approximate scaling properties of RNA free energy landscapes. J. Theoret. Biol. 181, 299-310. (doi:10.1006/jtbi.1996. 0132)
-
(1996)
J. Theoret. Biol
, vol.181
, pp. 299-310
-
-
Baskaran, S.1
Stadler, P.F.2
Schuster, P.3
-
4
-
-
0002460716
-
Epistasis variance: A viewpoint on GAhardness
-
ed. G. J. E. Rawlins, San Mateo, CA: Morgan Kaufmann
-
Davidor, Y. 1991 Epistasis variance: a viewpoint on GAhardness. In Foundations of genetic algorithms (ed. G. J. E. Rawlins). San Mateo, CA: Morgan Kaufmann.
-
(1991)
Foundations of genetic algorithms
-
-
Davidor, Y.1
-
5
-
-
4243861085
-
Random-energy model: An exactly solvable model of disordered systems
-
doi:10.1103/PhysRevB. 24.2613
-
Derrida, B. 1981 Random-energy model: an exactly solvable model of disordered systems. Phys. Rev. B 24, 2613. (doi:10.1103/PhysRevB. 24.2613)
-
(1981)
Phys. Rev. B
, vol.24
, pp. 2613
-
-
Derrida, B.1
-
6
-
-
3042735602
-
Prediction of hybridization and melting for double-stranded nucleic acids
-
doi:10.1529/biophysj.103.020743
-
Dimitrov, R. A. & Zuker, M. 2004 Prediction of hybridization and melting for double-stranded nucleic acids. Biophys. J. 87, 215-226. (doi:10.1529/biophysj.103.020743)
-
(2004)
Biophys. J
, vol.87
, pp. 215-226
-
-
Dimitrov, R.A.1
Zuker, M.2
-
7
-
-
0025074907
-
In vitro selection of RNA molecules that bind specific ligands
-
doi:10.1016/S0022-5193(87)80029-2
-
Ellington, A. D. & Szostak, J. W. 1990 In vitro selection of RNA molecules that bind specific ligands. Nature 346, 818-822. (doi:10.1016/S0022-5193(87)80029-2)
-
(1990)
Nature
, vol.346
, pp. 818-822
-
-
Ellington, A.D.1
Szostak, J.W.2
-
8
-
-
84943817322
-
Error detecting and error correcting codes
-
Hamming, R. W. 1950 Error detecting and error correcting codes. Bell Syst. Tech. 29, 147-160.
-
(1950)
Bell Syst. Tech
, vol.29
, pp. 147-160
-
-
Hamming, R.W.1
-
9
-
-
0003155122
-
Fitness distance correlation as a measure of problem dif.culty for genetic algorithms
-
Pittsburgh, PA, 15-19 July, San Francisco, CA: Morgan Kaufmann
-
Jones, T. & Forrest, S. 1995 Fitness distance correlation as a measure of problem dif.culty for genetic algorithms. In Proc. 6th Int. Conf. on Genetic Algorithms, Pittsburgh, PA, 15-19 July 1995, pp. 184-192. San Francisco, CA: Morgan Kaufmann.
-
(1995)
Proc. 6th Int. Conf. on Genetic Algorithms
, pp. 184-192
-
-
Jones, T.1
Forrest, S.2
-
10
-
-
85020834404
-
-
Kallel, L., Naudts, B. & Reeves, C. R. 2001 Properties of .tness functions and search landscapes. In Theoretical aspects of evolutionary computing, (eds L. Kallel, B. Naudts & A. Rogers). pp. 175-206. Berlin, Germany: Springer-Verlag.
-
Kallel, L., Naudts, B. & Reeves, C. R. 2001 Properties of .tness functions and search landscapes. In Theoretical aspects of evolutionary computing, (eds L. Kallel, B. Naudts & A. Rogers). pp. 175-206. Berlin, Germany: Springer-Verlag.
-
-
-
-
11
-
-
38049048268
-
Exploring the sequence space of a DNA aptamer using microarrays
-
doi:10.1093/nar/ gkm922
-
Katilius, E., Flores, C. & Woodbury, N. W. 2007 Exploring the sequence space of a DNA aptamer using microarrays. Nucleic Acids Res. 35, 7626-7635. (doi:10.1093/nar/ gkm922)
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7626-7635
-
-
Katilius, E.1
Flores, C.2
Woodbury, N.W.3
-
13
-
-
0023647382
-
Towards a general theory of adaptive walks on rugged landscapes
-
doi:10.1016/S0022-5193(87)80029-2
-
Kauffman, S. & Levin, S. 1987 Towards a general theory of adaptive walks on rugged landscapes. J. Theoret. Biol. 128, 11-45. (doi:10.1016/S0022-5193(87)80029-2)
-
(1987)
J. Theoret. Biol
, vol.128
, pp. 11-45
-
-
Kauffman, S.1
Levin, S.2
-
14
-
-
0024803111
-
The NK model of rugged fitness landscapes and its application to maturation of the immune response
-
doi:10. 1016/S0022-5193(89)80019- 0
-
Kauffman, S. &Weinberger, E. 1989 The NK model of rugged fitness landscapes and its application to maturation of the immune response. J. Theoret. Biol. 141, 211-245. (doi:10. 1016/S0022-5193(89)80019- 0)
-
(1989)
J. Theoret. Biol
, vol.141
, pp. 211-245
-
-
Kauffman, S.1
Weinberger, E.2
-
15
-
-
58549109637
-
Array-based evolution of DNA aptamers allows modelling of an explicit sequence-fitness landscape
-
doi:10.1093/nar/gkn899
-
Knight, C. G., Platt, M., Rowe, W., Wedge, D. C., Khan, F., Day, P. J., McShea, A., Knowles, J. & Kell, D. B. 2009 Array-based evolution of DNA aptamers allows modelling of an explicit sequence-fitness landscape. Nucleic Acids Res. 37, e6. (doi:10.1093/nar/gkn899)
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Knight, C.G.1
Platt, M.2
Rowe, W.3
Wedge, D.C.4
Khan, F.5
Day, P.J.6
McShea, A.7
Knowles, J.8
Kell, D.B.9
-
16
-
-
33750276127
-
Mixedinteger NK landscapes
-
Parallel problem solving from nature IX, Berlin, Germany: Springer, doi:10.1007/ 11844297-5
-
Li, R., Emmerich, M. T. M., Eggermont, J., Bovenkamp, E. G. P., Bäck, T., Dijkstra, J. & Reiber, J. 2006 Mixedinteger NK landscapes. In Parallel problem solving from nature IX. Lecture Notes in Computer Science, no. 4193, pp. 42-52. Berlin, Germany: Springer. (doi:10.1007/ 11844297-5)
-
(2006)
Lecture Notes in Computer Science
, vol.4193
, pp. 42-52
-
-
Li, R.1
Emmerich, M.T.M.2
Eggermont, J.3
Bovenkamp, E.G.P.4
Bäck, T.5
Dijkstra, J.6
Reiber, J.7
-
17
-
-
65849401380
-
Analysis of aptamer sequence activity relationships
-
doi:10.1039/b814892a
-
Platt, M., Rowe,W., Knowles, J. D., Day, P. J. R. & Kell, D. B. 2009 Analysis of aptamer sequence activity relationships. Integr. Biol. 1, 116-123. (doi:10.1039/b814892a)
-
(2009)
Integr. Biol
, vol.1
, pp. 116-123
-
-
Platt, M.1
Rowe, W.2
Knowles, J.D.3
Day, P.J.R.4
Kell, D.B.5
-
18
-
-
33846551980
-
Empirical fitness landscapes reveal accessible evolutionary paths
-
doi:10.1038/nature05451
-
Poelwijk, F. J., Kiviet, D. J.,Weinreich, D. M.&Tans, S. J. 2007 Empirical fitness landscapes reveal accessible evolutionary paths. Nature 445, 383-386. (doi:10.1038/nature05451)
-
(2007)
Nature
, vol.445
, pp. 383-386
-
-
Poelwijk, F.J.1
Kiviet, D.J.2
Weinreich, D.M.3
Tans, S.J.4
-
19
-
-
0012279561
-
Epistasis in genetic algorithms: An experimental design perspective
-
Pittsburgh, PA, 15-19 July, San Francisco, CA: Morgan Kaufmann
-
Reeves, C. R. & Wright, C. C. 1995 Epistasis in genetic algorithms: an experimental design perspective. In Proc. 6th Int. Conf. on Genetic Algorithms, Pittsburgh, PA, 15-19 July 1995, pp. 217-224. San Francisco, CA: Morgan Kaufmann.
-
(1995)
Proc. 6th Int. Conf. on Genetic Algorithms
, pp. 217-224
-
-
Reeves, C.R.1
Wright, C.C.2
-
20
-
-
0028196714
-
From sequences to shapes and back: A case study in RNA secondary structures
-
doi:10.1098/rspb.1994.0040
-
Schuster, P., Fontana, W., Stadler, P. F. & Hofacker, I. L. 1994 From sequences to shapes and back: a case study in RNA secondary structures. Proc. R. Soc. Lond. B 255, 279-284. (doi:10.1098/rspb.1994.0040)
-
(1994)
Proc. R. Soc. Lond. B
, vol.255
, pp. 279-284
-
-
Schuster, P.1
Fontana, W.2
Stadler, P.F.3
Hofacker, I.L.4
-
21
-
-
34447506391
-
Airfoil shape parameterization for optimum Navier-Stokes design with genetic algorithm
-
doi:10. 1016/j.ast.2007.04.004
-
Shahrokhi, A. & Jahangirian, A. 2007 Airfoil shape parameterization for optimum Navier-Stokes design with genetic algorithm. Aerospace Sci. Technol. 11, 443-450. (doi:10. 1016/j.ast.2007.04.004)
-
(2007)
Aerospace Sci. Technol
, vol.11
, pp. 443-450
-
-
Shahrokhi, A.1
Jahangirian, A.2
-
22
-
-
0036557854
-
Generalized topological spaces in evolutionary theory and combinatorial chemistry
-
doi:10.1021/ci0100898
-
Stadler, B. M. R. & Stadler, P. F. 2002 Generalized topological spaces in evolutionary theory and combinatorial chemistry. J. Chem. Inf. Comput. Sci. 42, 577-585. (doi:10.1021/ci0100898)
-
(2002)
J. Chem. Inf. Comput. Sci
, vol.42
, pp. 577-585
-
-
Stadler, B.M.R.1
Stadler, P.F.2
-
23
-
-
0031563773
-
Oligonucleotide inhibitors of human thrombin that bind distinct epitopes
-
doi:10.1006/jmbi. 1997.1275
-
Tasset, D. M., Kubik, M. F. & Steiner, W. 1997 Oligonucleotide inhibitors of human thrombin that bind distinct epitopes. J. Mol. Biol. 272, 688-698. (doi:10.1006/jmbi. 1997.1275)
-
(1997)
J. Mol. Biol
, vol.272
, pp. 688-698
-
-
Tasset, D.M.1
Kubik, M.F.2
Steiner, W.3
-
24
-
-
0025194307
-
Systematic evolution of ligands by exponential enrichment-RNA ligands to bacteriophage-T4 DNA-polymerase
-
doi:10. 1126/science.2200121
-
Tuerk, C. & Gold, L. 1990 Systematic evolution of ligands by exponential enrichment-RNA ligands to bacteriophage-T4 DNA-polymerase. Science 249, 505-510. (doi:10. 1126/science.2200121)
-
(1990)
Science
, vol.249
, pp. 505-510
-
-
Tuerk, C.1
Gold, L.2
-
25
-
-
0033770580
-
Rational evolutionary design: The theory of in vitro protein evolution
-
doi:10.1016/ S0065-3233(01)55003-2
-
Voigt, C. A., Kauffman, S. & Wang, Z. G. 2000 Rational evolutionary design: the theory of in vitro protein evolution. Adv. Protein Chem. 55, 79-160. (doi:10.1016/ S0065-3233(01)55003-2)
-
(2000)
Adv. Protein Chem
, vol.55
, pp. 79-160
-
-
Voigt, C.A.1
Kauffman, S.2
Wang, Z.G.3
-
26
-
-
32244448130
-
Defining the sequence-recognition profile of DNA-binding molecules
-
doi:10.1073/pnas.0509843102
-
Warren, C. L., Kratochvil, N. C. S., Hauschild, K. E., Foister, S., Brezinski, M. L., Dervan, P. B., Phillips, G. N. & Ansari, A. Z. 2006 Defining the sequence-recognition profile of DNA-binding molecules. Proc. Natl Acad. Sci. USA 103, 867-872. (doi:10.1073/pnas.0509843102)
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 867-872
-
-
Warren, C.L.1
Kratochvil, N.C.S.2
Hauschild, K.E.3
Foister, S.4
Brezinski, M.L.5
Dervan, P.B.6
Phillips, G.N.7
Ansari, A.Z.8
-
27
-
-
0024991769
-
Correlated and uncorrelated fitness landscapes and how to tell the difference
-
doi:10.1007/BF00202749
-
Weinberger, E. 1990 Correlated and uncorrelated fitness landscapes and how to tell the difference. Biol. Cybernet. 63, 325-336. (doi:10.1007/BF00202749)
-
(1990)
Biol. Cybernet
, vol.63
, pp. 325-336
-
-
Weinberger, E.1
-
28
-
-
0025047647
-
Architecture of ribosomal RNA: Constraints on the sequence of 'tetraloops'
-
doi:10.1073/pnas.87.21.8467
-
Woese, C. R., Winkers, S. & Gutell, R. R. 1990 Architecture of ribosomal RNA: constraints on the sequence of 'tetraloops'. Proc. Natl Acad. Sci. USA 87, 8467-8471. (doi:10.1073/pnas.87.21.8467)
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 8467-8471
-
-
Woese, C.R.1
Winkers, S.2
Gutell, R.R.3
-
29
-
-
0000907353
-
The roles of mutation, inbreeding, crossbreeding, and selection in evolution
-
Wright, S. 1932 The roles of mutation, inbreeding, crossbreeding, and selection in evolution. Proc. 6th Int. Congress on Genetics, pp. 355-366.
-
(1932)
Proc. 6th Int. Congress on Genetics
, pp. 355-366
-
-
Wright, S.1
|