DNA sequence analysis of the late-blight pathogen gives clues to the world-wide migration

Acta Horticulturae

Volumn 834, Issue , 2009, Pages 27-40

  Ristaino, J B ^a   Hu, Chia Hui ^a  

^a NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

Oomycete; Phytopathology; Phytophthora infestans; Population genetics

Indexed keywords

OOMYCETES; PHYTOPHTHORA; PHYTOPHTHORA ANDINA; PHYTOPHTHORA INFESTANS; SOLANUM TUBEROSUM;

EID: 75949086408     PISSN: 05677572     EISSN: None     Source Type: Book Series    
DOI: 10.17660/ActaHortic.2009.834.2     Document Type: Conference Paper

References (51)

1. Adler, N.E., Erselius, L.J., Chacon, M.G, Flier, W.G., Ordoñez, M.E., Kroon, L.P.N.M. and Forbes, G.A. 2004. Genetic diversity of Phytophthora infestans sensu lato in Ecuador provides new insight into the origin of this important plant pathogen. Phytopathology 94:154-162.
2. Anderson, P.K., Cunningham, A.A., Patel, N.G., Morales, F.J., Epstein, P.R. and Daszak, P. 2004. Emerging infectious diseases of plants:pathogen pollution, climate change and agrotechnology drivers. Trends Ecol. Evol. 19:535-544.
3. Anonymous. 1996. Late blight: A global initiative. Lima, Peru, International Potato Center (CIP).
4. Avila-Adame, C., Gómez, L., Buell, C.R. and Ristaino, J.B. 2006. Mitochondrial genome sequencing of the haplotypes of the Irish Potato famine pathogen, Phytophthora infestans. Curr. Gen. 49:39-46.
5. Berkeley, M.J. 1846. Observations, botanical and physiological on the potato murain. J. Hort. Soc. London 1:9-34.
6. Bourke, P.M. 1964. Emergence of potato blight. Nature 203:805-808.
7. Brasier, C.M., Cooke, D.E.L. and Duncan, J.M. 1999. Origin of a new Phytophthora pathogen through interspecific hybridization. Proc. Natl. Acad. Sci. USA 96:5878-5883.
8. Brasier, C.M. 2008. The biosecurity threat to the UK and the global environment from international trade in plants. Plant Pathol. DOI.111/j.1365-3059.2008.01886.
9. Carter, D.A., Archer, S.A., Buck, K.W., Shaw, D.S. and Shattock, R.C. 1990. Restriction fragment length polymorphisms of mitochondrial DNA of Phytophthora infestans. Mycol. Res. 94:1123-1128.
10. Cooke, D.E.L., Drenth, A., Duncan, J.M., Wagels, G. and Brasier, C.M. 2000. A molecular phylogeny of Phytophthora and related oomycetes. Fungal Genet. Biol. 30:17-32.
11. Cooke, D.E.L., Lees, A.K., Hansen, J.G., Lassen, P., Andersson, B. and. Bakonyi, J. 2006. EUCABLIGHT:progress in characterizing European P. infestans populations. Proc. of the 9th Workshop of a European Network for the Development of an Integrated Control Strategy for Late Blight - PPO Spec. Rep. 11:143-150.
12. Cooke, D.E.L., Lees, A.K., Hansen, J.G., Lassen, P., Andersson, B. and Bakonyi, J. 2007. EUCABLIGHT: one year on: An update of the European blight population database. Proc. of the 9th Workshop of a European Network for the Development of an Integrated Control Strategy for Late Blight - PPO Spec. Rep. 12:129-135.
13. Drenth, A., Tas, I. and Govers, F. 1994. DNA fingerprinting uncovers a new sexuallyreproducing population of Phytophthora infestans in the Netherlands. Eur. J. Plant Pathol. 100:97-107.
14. Flier, W.G., Grν̈nwald, N.K., Kroon, L.P.N.M., Sturbaum, A.K., van den Bosch, T.B.M., Garay-Serrano, E., Lozoya-Saldana, H., Bonants, P.J.M. and Turkensteen, L.J. 2002. Phytophthora ipomoeae sp. nov., a new homothallic species causing leaf blight on Ipomoea longipedunculata in the Toluca Valley of central Mexico. Mycol. Res. 106:848-856.
15. Fraser, D.E., Shoemaker, P.B. and Ristaino, J.B. 1999. Characterization of isolates of Phytophthora infestans from tomato and potato in North Carolina from 1993-1995. Plant Dis. 83:633-638.
16. Fry, W.E, Goodwin, S.B, Matuszak, J., Spielman, L. and Milgroom, M. 1992. Population genetics and intercontinental migrations of Phytophthora infestans. Annu. Rev. Phytopathol. 30:107-129.
17. Fry, W.E., Goodwin, S., Dyer, A., Matuszak, J., Drenth, A., Tooley, P., Sujkowski, L., Koh, Y., Cohen, B., Spielman, L., Deahl, K., Inglis, D. and Sandlan, K. 1993. Historical and recent migrations of Phytophthora infestans: chronology, pathways and implications. Plant Dis. 77:653-661.
18. Fry, W.E. 2008. Phytophthora infestans: the plant (and R gene) destroyer. Mol. Plant Pathol. 9:385-402.
19. Gallegly, M.E. and Galindo, A.J. 1958. Mating types and oospore of Phytophthora infestans in nature in Mexico. Phytopathology 48:274-277.
20. Galindo, A.J. and Hohl, H.R. 1985. Phytophthora mirabilis, a new species of Phytophthora. Sydowia Ann. Mycol. Ser. II. 38:87-96.
21. Gavino, P.D., Smart, C.D., Sandrock, R.W., Miller, J.S., Hamm, P.B., Yun Lee, T., Davis, R.M. and Fry, W.F. 2000. Implications of sexual reproduction for Phytophthora infestans in the United States: Generation of an aggressive lineage. Plant Dis. 84:731-735.
22. Gavino, P.D. and Fry, W.E. 2002. Diversity in and evidence for selection of the mitochondrial genome of Phytophthora infestans. Mycologia 94:781-793.
23. Goodwin, S.B., Drenth, A. and Fry, W.E. 1992. Cloning and genetic analyses of two highly polymorphic, moderately repetitive nuclear DNA's from Phytophthora infestans. Cur. Gen. 22:107-115.
24. Goodwin, S.B. and Fry, W.E. 1994. Genetic analysis of interspecific hybrids between Phytophthora infestans and Phytophthora mirabilis. Exp. Mycol. 18:20-32.
25. Goodwin, S.B., Cohen, B.A., Deahl, K.L. and Fry, W.E. 1994a. Migration from Northern Mexico as the probable cause of recent genetic changes in populations of Phytophthora infestans in the United States and Canada. Phytopathology 84:553-558.
26. Goodwin, S.B, Cohen, B.A. and Fry, W.E. 1994b. Panglobal distribution of a single clonal lineage of the Irish potato famine fungus. Proc. Nat. Acad. Sci. USA 91:11591-11595.
27. Goodwin, S.B. and Drenth, A. 1997. Origin of the A2 mating type of P. infestans outside Mexico. Phytopathology 87:992-999.
28. Goodwin, S.B., Smart, C.D., Sandrock, R.W., Deahl, K.L., Punja, Z.K. and Fry, W.E. 1998. Genetic change within populations of Phytophthora infestans in the United States and Canada during 1994-1996: Role of Migration and Recombination. Phytopathology 88:939-949.
29. Gomez, L., Carbone, I. and Ristaino, J.B. 2007. An Andean origin for Phytophthora infestans inferred from nuclear and mitochondrial DNA sequences. Proc. Nat. Acad. Sci. USA. 104:3306-3311.
30. Gomez, L., Hu, C., Olivia, R., Forbes, G. and Ristaino, J.B. 2008. Phylogenetic relationships of a new species, Phytophthora andina, from the highlands of Ecuador that is closely related to the Irish Potato famine pathogen Phytophthora infestans. Mycologia 100:590-602.
31. Griffith, G.W. and Shaw, D.S. 1998. Polymorphisms in Phytophthora infestans: Four mitochondrial haplotypes are detected after PCR Amplification of DNA from purecultures or from host lesions. Appl. Envir. Micro. 64:4007-4114.
32. Gunderson, J.H., Elwood, H., Ingold, H., Kindle, A. and Sogin, M.L. 1987. Phylogenetic relationships between chlororphytes, chrysophytes, and oomycetes. Proc. Natl. Acad. Sci. U.S.A. 84:5823-5827.
33. Guo, L., Zhu, X.Q., Liu, G. and Ristaino, J.B. 2008. Genetic diversity of Phytophthora infestans from China. Proc. of Global Initiative on Late Blight, Beijing China, April 3-5, p.26.
34. Judelson, H. 2007. Genomics of the plant pathogenic oomycete Phytophthora: insights into biology and evolution. Adv. Gen. 57:97-141.
35. Knapova, G. and Gisi, U. 2002. Phenotypic and genotypic structure of Phytophthora infestans populations on potato and tomato in France and Switzerland. Plant Pathol. 51:641-553.
36. Kotilla, M.A. 1946. Studies on the potato late blight fungus. M.S. Thesis, University of Minnesota, St. Paul.
37. Kroon, L.P.N.M., Bakker, F.T., van den Bosch, G.B.M., Bonants, P.J.M. and Flier, W.G. 2004. Phylogenetic analysis of Phytophthora species based on mitochondrial and nuclear DNA sequences. Fungal Genet. Biol. 41:766-82.
38. Lang, B.F. and Forget, L. 1993. The mitochondrial genome of Phytophthora infestans. p.3.133-3.135. In: S.J. O'Brien (ed.), Genetic maps. Locus maps of complex genomes. Cold Springs Harbor, New York.
39. Lees, A.K., Wattier, R., Sullivan, L., Williams, N.A. and Cooke, D.E.L. 2006. Novel microsatellite markers for the analysis of Phytophthora infestans populations. Plant Pathol. 5:311-319.
40. May, K.J. and Ristaino, J.B. 2004. Identify of the Mitochondrial DNA Haplotype(s) of Phytophthora infestans in Historical Specimens from the Irish Potato Famine. Mycol. Res. 108:171-179.
41. Oliva, R.F., Chacon, M.G., Cooke, D.E.L., Lees, A.K. and Forbes, G.A. 2007. Is Phytophthora infestans a good taxonomist? Host recognition and co-evolution in the Phytophthora/Solanum interaction. Acta Hort. 745:465-470.
42. Price, E.W. and Carbone, I. 2005. SNAP: workbench management tool for evolutionary population genetic analysis. Bioinformatics 21:402-404.
43. Ristaino, J.B. 1998. The importance of archival and herbarium materials in understanding the role of oospores in late blight epidemics of the past. Phytopathology 88:1120-1130.
44. Ristaino, J.B., Madritch, M., Trout, C.L. and Parra, G. 1998. PCR amplification of ribosomal DNA for species identification in the plant pathogen genus Phytophthora. Appl. Environ. Microbiol. 68:948-954.
45. Ristaino, J.B., Groves, C.T. and Parra, G. 2001. PCR Amplification of the Irish Potato Famine Pathogen from Historic Specimens. Nature 41:695-697.
46. Ristaino. J.B. 2002. Tracking historic migrations of the Irish potato famine Pathogen Phytophthora infestans. Microbes and Infection. 4:1369-1377.
47. Ristaino, J.B. 2006. Tracking the evolutionary history of the potato blight pathogen with historical collections. Outlooks Pest. Man. 17:228-231.
48. Tooley, P.W., Therrien, C.D. and Ritch, D.L. 1989. Mating type, race composition, nuclear DNA content, and isozyme analysis of Peruvian isolates of Phytophthora infestans. Phytopathology 79:478-481.
49. Trout, C.L, Ristaino, J.B., Madritch, M. and Wangsomboondee, T. 1997. Rapid Detection of Phytophthora infestans in late blight infected tissue of potato and tomato using PCR. Plant Dis. 81:1042-1048.
50. Wangsomboondee, T., Groves, C.T., Shoemaker, P.B., Cubeta, M.A. and Ristaino, J.B. 2002. Phytophthora infestans populations from Tomato and Potato in North Carolina differ in the genetic diversity and structure. Phytopathology 92:1189-1195.
51. Zwankhuizen, M.J., Govers, F. and Zadoks, J.C. 1998. Development of potato late blight epidemics: Disease foci, disease gradients, and infection sources. Phytopathology 88:754-63.