-
1
-
-
34648835408
-
Impaired expression of peripheral blood apoptotic-related gene transcripts in acute multiple sclerosis relapse
-
Achiron A., et al. Impaired expression of peripheral blood apoptotic-related gene transcripts in acute multiple sclerosis relapse. Ann. N.Y. Acad. Sci. 1107 (2007) 155-167
-
(2007)
Ann. N.Y. Acad. Sci.
, vol.1107
, pp. 155-167
-
-
Achiron, A.1
-
2
-
-
33749246555
-
Peripheral blood gene expression signature mirrors central nervous system disease: the model of multiple sclerosis
-
Achiron A., and Gurevich M. Peripheral blood gene expression signature mirrors central nervous system disease: the model of multiple sclerosis. Autoimmun. Rev. 5 (2006) 517-522
-
(2006)
Autoimmun. Rev.
, vol.5
, pp. 517-522
-
-
Achiron, A.1
Gurevich, M.2
-
3
-
-
42449106065
-
Genes implicated in multiple sclerosis pathogenesis from consilience of genotyping and expression profiles in relapse and remission
-
Arthur A.T., et al. Genes implicated in multiple sclerosis pathogenesis from consilience of genotyping and expression profiles in relapse and remission. BMC Med. Genet. 9 (2008) 17
-
(2008)
BMC Med. Genet.
, vol.9
, pp. 17
-
-
Arthur, A.T.1
-
4
-
-
70349459343
-
Microarray analysis in B cells among siblings with/without MS - role for transcription factor TCF2
-
Avasarala J.R., et al. Microarray analysis in B cells among siblings with/without MS - role for transcription factor TCF2. BMC Med. Genomics 1 (2008) 2
-
(2008)
BMC Med. Genomics
, vol.1
, pp. 2
-
-
Avasarala, J.R.1
-
5
-
-
70349629969
-
Replication analysis identifies TYK2 as a multiple sclerosis susceptibility factor
-
Ban M., et al. Replication analysis identifies TYK2 as a multiple sclerosis susceptibility factor. Eur. J. Hum. Genet. 17 (2009) 1309-1313
-
(2009)
Eur. J. Hum. Genet.
, vol.17
, pp. 1309-1313
-
-
Ban, M.1
-
6
-
-
0001677717
-
Controlling the false disovery rate: a practical and powerful approach to multiple testing
-
Benjamini Y., and Hochberg Y. Controlling the false disovery rate: a practical and powerful approach to multiple testing. J. R. Statist. Soc. B. 57 (1995) 298-300
-
(1995)
J. R. Statist. Soc. B.
, vol.57
, pp. 298-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
7
-
-
10744231299
-
Gene expression profile in multiple sclerosis patients and healthy controls: identifying pathways relevant to disease
-
Bomprezzi R., et al. Gene expression profile in multiple sclerosis patients and healthy controls: identifying pathways relevant to disease. Hum. Mol. Genet. 12 (2003) 2191-2199
-
(2003)
Hum. Mol. Genet.
, vol.12
, pp. 2191-2199
-
-
Bomprezzi, R.1
-
8
-
-
0033563170
-
Tyrphostin B42 inhibits IL-12-induced tyrosine phosphorylation and activation of Janus kinase-2 and prevents experimental allergic encephalomyelitis
-
Bright J.J., et al. Tyrphostin B42 inhibits IL-12-induced tyrosine phosphorylation and activation of Janus kinase-2 and prevents experimental allergic encephalomyelitis. J. Immunol. 162 (1999) 6255-6262
-
(1999)
J. Immunol.
, vol.162
, pp. 6255-6262
-
-
Bright, J.J.1
-
9
-
-
38549117309
-
The HGNC Database in 2008: a resource for the human genome
-
Bruford E.A., et al. The HGNC Database in 2008: a resource for the human genome. Nucleic Acids Res. 36 (2008) D445-448
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Bruford, E.A.1
-
10
-
-
67249091460
-
Differential expression, and genetic association, of CD58 in Swedish multiple sclerosis patients
-
author reply E59
-
Brynedal B., et al. Differential expression, and genetic association, of CD58 in Swedish multiple sclerosis patients. Proc. Natl. Acad. Sci. U. S. A. 106 (2009) E58 author reply E59
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
-
-
Brynedal, B.1
-
11
-
-
0035164119
-
Patterns of cerebrospinal fluid pathology correlate with disease progression in multiple sclerosis
-
Cepok S., et al. Patterns of cerebrospinal fluid pathology correlate with disease progression in multiple sclerosis. Brain 124 (2001) 2169-2176
-
(2001)
Brain
, vol.124
, pp. 2169-2176
-
-
Cepok, S.1
-
12
-
-
59849120420
-
Inflammatory cytokine production by human neutrophils involves C/EBP transcription factors
-
Cloutier A., et al. Inflammatory cytokine production by human neutrophils involves C/EBP transcription factors. J. Immunol. 182 (2009) 563-571
-
(2009)
J. Immunol.
, vol.182
, pp. 563-571
-
-
Cloutier, A.1
-
13
-
-
46849111602
-
Cytometric profiling in multiple sclerosis uncovers patient population structure and a reduction of CD8low cells
-
De Jager P.L., et al. Cytometric profiling in multiple sclerosis uncovers patient population structure and a reduction of CD8low cells. Brain 131 (2008) 1701-1711
-
(2008)
Brain
, vol.131
, pp. 1701-1711
-
-
De Jager, P.L.1
-
14
-
-
65249155425
-
The role of the CD58 locus in multiple sclerosis
-
De Jager P.L., et al. The role of the CD58 locus in multiple sclerosis. Proc. Natl. Acad. Sci. U. S. A. 106 (2009) 5264-5269
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 5264-5269
-
-
De Jager, P.L.1
-
15
-
-
67649876123
-
Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci
-
De Jager P.L., et al. Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci. Nat. Genet. 41 (2009) 776-782
-
(2009)
Nat. Genet.
, vol.41
, pp. 776-782
-
-
De Jager, P.L.1
-
16
-
-
24044522270
-
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
-
Durinck S., et al. BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis. Bioinformatics 21 (2005) 3439-3440
-
(2005)
Bioinformatics
, vol.21
, pp. 3439-3440
-
-
Durinck, S.1
-
17
-
-
0038444122
-
Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells
-
Elkon R., et al. Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells. Genome Res. 13 (2003) 773-780
-
(2003)
Genome Res.
, vol.13
, pp. 773-780
-
-
Elkon, R.1
-
18
-
-
34247846387
-
Identification of molecular biomarkers for multiple sclerosis
-
Fossey S.C., et al. Identification of molecular biomarkers for multiple sclerosis. J. Mol. Diagn. 9 (2007) 197-204
-
(2007)
J. Mol. Diagn.
, vol.9
, pp. 197-204
-
-
Fossey, S.C.1
-
20
-
-
28744458859
-
Bioconductor: open software development for computational biology and bioinformatics
-
Gentleman R.C., et al. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5 (2004) R80
-
(2004)
Genome Biol.
, vol.5
-
-
Gentleman, R.C.1
-
21
-
-
75949096268
-
A role for VAV1 in experimental autoimmune encephalomyelitis and multiple sclerosis
-
Jagodic M., et al. A role for VAV1 in experimental autoimmune encephalomyelitis and multiple sclerosis. Sci. Transl. Med. 1 (2009) 10ra21
-
(2009)
Sci. Transl. Med.
, vol.1
-
-
Jagodic, M.1
-
22
-
-
0033982936
-
KEGG: kyoto encyclopedia of genes and genomes
-
Kanehisa M., and Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28 (2000) 27-30
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
23
-
-
33644874819
-
From genomics to chemical genomics: new developments in KEGG
-
Kanehisa M., et al. From genomics to chemical genomics: new developments in KEGG. Nucleic Acids Res. 34 (2006) D354-357
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Kanehisa, M.1
-
24
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
Kanehisa M., et al. KEGG for linking genomes to life and the environment. Nucleic Acids Res. 36 (2008) D480-D484
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Kanehisa, M.1
-
25
-
-
67649407620
-
Whole genome analysis of the action of interferon-beta
-
Kauffman M.A., et al. Whole genome analysis of the action of interferon-beta. Int. J. Clin. Pharmacol. Ther. 47 (2009) 328-357
-
(2009)
Int. J. Clin. Pharmacol. Ther.
, vol.47
, pp. 328-357
-
-
Kauffman, M.A.1
-
26
-
-
0035710746
-
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
-
Livak K.J., and Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 25 (2001) 402-408
-
(2001)
Methods
, vol.25
, pp. 402-408
-
-
Livak, K.J.1
Schmittgen, T.D.2
-
27
-
-
44349181984
-
Relapses in multiple sclerosis are associated with increased CD8+T-cell mediated cytotoxicity in CSF
-
Malmestrom C., et al. Relapses in multiple sclerosis are associated with increased CD8+T-cell mediated cytotoxicity in CSF. J. Neuroimmunol. 196 (2008) 159-165
-
(2008)
J. Neuroimmunol.
, vol.196
, pp. 159-165
-
-
Malmestrom, C.1
-
28
-
-
33644876958
-
TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes
-
Matys V., et al. TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. Nucleic Acids Res. 34 (2006) D108-D110
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Matys, V.1
-
29
-
-
0034955141
-
Recommended diagnostic criteria for multiple sclerosis: guidelines from the International Panel on the diagnosis of multiple sclerosis
-
McDonald W.I., et al. Recommended diagnostic criteria for multiple sclerosis: guidelines from the International Panel on the diagnosis of multiple sclerosis. Ann. Neurol. 50 (2001) 121-127
-
(2001)
Ann. Neurol.
, vol.50
, pp. 121-127
-
-
McDonald, W.I.1
-
30
-
-
33845624887
-
Microarray validation: factors influencing correlation between oligonucleotide microarrays and real-time PCR
-
Morey J.S., et al. Microarray validation: factors influencing correlation between oligonucleotide microarrays and real-time PCR. Biol. Proced. Online 8 (2006) 175-193
-
(2006)
Biol. Proced. Online
, vol.8
, pp. 175-193
-
-
Morey, J.S.1
-
31
-
-
26844548688
-
Treatment of mice with the suppressor of cytokine signaling-1 mimetic peptide, tyrosine kinase inhibitor peptide, prevents development of the acute form of experimental allergic encephalomyelitis and induces stable remission in the chronic relapsing/remitting form
-
Mujtaba M.G., et al. Treatment of mice with the suppressor of cytokine signaling-1 mimetic peptide, tyrosine kinase inhibitor peptide, prevents development of the acute form of experimental allergic encephalomyelitis and induces stable remission in the chronic relapsing/remitting form. J. Immunol. 175 (2005) 5077-5086
-
(2005)
J. Immunol.
, vol.175
, pp. 5077-5086
-
-
Mujtaba, M.G.1
-
32
-
-
4544312491
-
Quercetin, a flavonoid phytoestrogen, ameliorates experimental allergic encephalomyelitis by blocking IL-12 signaling through JAK-STAT pathway in T lymphocyte
-
Muthian G., and Bright J.J. Quercetin, a flavonoid phytoestrogen, ameliorates experimental allergic encephalomyelitis by blocking IL-12 signaling through JAK-STAT pathway in T lymphocyte. J. Clin. Immunol. 24 (2004) 542-552
-
(2004)
J. Clin. Immunol.
, vol.24
, pp. 542-552
-
-
Muthian, G.1
Bright, J.J.2
-
33
-
-
0036546185
-
Peroxisome proliferator-activated receptor-gamma agonists inhibit experimental allergic encephalomyelitis by blocking IL-12 production, IL-12 signaling and Th1 differentiation
-
Natarajan C., and Bright J.J. Peroxisome proliferator-activated receptor-gamma agonists inhibit experimental allergic encephalomyelitis by blocking IL-12 production, IL-12 signaling and Th1 differentiation. Genes Immun. 3 (2002) 59-70
-
(2002)
Genes Immun.
, vol.3
, pp. 59-70
-
-
Natarajan, C.1
Bright, J.J.2
-
34
-
-
1042302898
-
Signaling through JAK2-STAT5 pathway is essential for IL-3-induced activation of microglia
-
Natarajan C., et al. Signaling through JAK2-STAT5 pathway is essential for IL-3-induced activation of microglia. Glia 45 (2004) 188-196
-
(2004)
Glia
, vol.45
, pp. 188-196
-
-
Natarajan, C.1
-
35
-
-
77649342850
-
Genetic variants of CC chemokine genes in experimental autoimmune encephalomyelitis, multiple sclerosis and rheumatoid arthritis
-
doi:10.1038/gene.2009.82
-
Öckinger J., et al. Genetic variants of CC chemokine genes in experimental autoimmune encephalomyelitis, multiple sclerosis and rheumatoid arthritis. Genes Immun. (2009). http://doi:10.1038/gene.2009.82 doi:10.1038/gene.2009.82
-
(2009)
Genes Immun.
-
-
Öckinger, J.1
-
36
-
-
33846057724
-
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
-
Pruitt K.D., et al. NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. 35 (2007) D61-65
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Pruitt, K.D.1
-
37
-
-
35748932852
-
-
R Development Core Team, R Foundation for Statistical Computing, Vienna, Australia
-
R Development Core Team. R: A Language and Environment for Statistical Computing (2007), R Foundation for Statistical Computing, Vienna, Australia
-
(2007)
R: A Language and Environment for Statistical Computing
-
-
-
38
-
-
33645467086
-
Gene expression profiles in Finnish twins with multiple sclerosis
-
Sarkijarvi S., et al. Gene expression profiles in Finnish twins with multiple sclerosis. BMC. Med. Genet. 7 (2006) 11
-
(2006)
BMC. Med. Genet.
, vol.7
, pp. 11
-
-
Sarkijarvi, S.1
-
39
-
-
33646107167
-
T cell gene expression profiling identifies distinct subgroups of Japanese multiple sclerosis patients
-
Satoh J., et al. T cell gene expression profiling identifies distinct subgroups of Japanese multiple sclerosis patients. J. Neuroimmunol. 174 (2006) 108-118
-
(2006)
J. Neuroimmunol.
, vol.174
, pp. 108-118
-
-
Satoh, J.1
-
40
-
-
50249125248
-
Molecular network analysis of T-cell transcriptome suggests aberrant regulation of gene expression by NF-kappaB as a biomarker for relapse of multiple sclerosis
-
Satoh J., et al. Molecular network analysis of T-cell transcriptome suggests aberrant regulation of gene expression by NF-kappaB as a biomarker for relapse of multiple sclerosis. Dis. Markers. 25 (2008) 27-35
-
(2008)
Dis. Markers.
, vol.25
, pp. 27-35
-
-
Satoh, J.1
-
41
-
-
33645241407
-
The RIN: an RNA integrity number for assigning integrity values to RNA measurements
-
Schroeder A., et al. The RIN: an RNA integrity number for assigning integrity values to RNA measurements. BMC Mol. Biol. 7 (2006) 3
-
(2006)
BMC Mol. Biol.
, vol.7
, pp. 3
-
-
Schroeder, A.1
-
42
-
-
46849085156
-
Gene expression analysis of interferon-beta treatment in multiple sclerosis
-
Sellebjerg F., et al. Gene expression analysis of interferon-beta treatment in multiple sclerosis. Mult. Scler. 14 (2008) 615-621
-
(2008)
Mult. Scler.
, vol.14
, pp. 615-621
-
-
Sellebjerg, F.1
-
43
-
-
34249891600
-
Gene expression changes in peripheral blood mononuclear cells from multiple sclerosis patients undergoing beta-interferon therapy
-
Singh M.K., et al. Gene expression changes in peripheral blood mononuclear cells from multiple sclerosis patients undergoing beta-interferon therapy. J. Neurol. Sci. 258 (2007) 52-59
-
(2007)
J. Neurol. Sci.
, vol.258
, pp. 52-59
-
-
Singh, M.K.1
-
44
-
-
33947174458
-
Metabolome, transcriptome, and bioinformatic cis-element analyses point to HNF-4 as a central regulator of gene expression during enterocyte differentiation
-
Stegmann A., et al. Metabolome, transcriptome, and bioinformatic cis-element analyses point to HNF-4 as a central regulator of gene expression during enterocyte differentiation. Physiol. Genomics 27 (2006) 141-155
-
(2006)
Physiol. Genomics
, vol.27
, pp. 141-155
-
-
Stegmann, A.1
-
45
-
-
36049013750
-
Homeobox gene HOXA9 inhibits nuclear factor-kappa B dependent activation of endothelium
-
Trivedi C.M., et al. Homeobox gene HOXA9 inhibits nuclear factor-kappa B dependent activation of endothelium. Atherosclerosis 195 (2007) e50-60
-
(2007)
Atherosclerosis
, vol.195
-
-
Trivedi, C.M.1
-
46
-
-
36348998163
-
Mouse lysocardiolipin acyltransferase controls the development of hematopoietic and endothelial lineages during in vitro embryonic stem-cell differentiation
-
Wang C., et al. Mouse lysocardiolipin acyltransferase controls the development of hematopoietic and endothelial lineages during in vitro embryonic stem-cell differentiation. Blood 110 (2007) 3601-3609
-
(2007)
Blood
, vol.110
, pp. 3601-3609
-
-
Wang, C.1
-
47
-
-
24644512209
-
Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis
-
Wilson C.L., and Miller C.J. Simpleaffy: a BioConductor package for Affymetrix Quality Control and data analysis. Bioinformatics 21 (2005) 3683-3685
-
(2005)
Bioinformatics
, vol.21
, pp. 3683-3685
-
-
Wilson, C.L.1
Miller, C.J.2
-
48
-
-
0033976586
-
TRANSFAC: an integrated system for gene expression regulation
-
Wingender E., et al. TRANSFAC: an integrated system for gene expression regulation. Nucleic Acids Res. 28 (2000) 316-319
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 316-319
-
-
Wingender, E.1
-
49
-
-
10844290766
-
A model-based background adjustment for oligonucleotide expression arrays
-
Wu Z., et al. A model-based background adjustment for oligonucleotide expression arrays. J. Am. Stat. Assoc. 99 (2004) 909-917
-
(2004)
J. Am. Stat. Assoc.
, vol.99
, pp. 909-917
-
-
Wu, Z.1
|