-
1
-
-
0030458494
-
An atomic view of the L-tryptophan binding site of trp repressor
-
Lawson, C.L. (1996) An atomic view of the L-tryptophan binding site of trp repressor. Nat. Struct. Biol., 3, 986-987.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 986-987
-
-
Lawson, C.L.1
-
2
-
-
56749132990
-
Conserved main-chain peptide distortions: a proposed role for Ile203 in catalysis by dihydrodipicolinate synthase
-
Dobson, R.C.J., Griffin, M.D.W., Devenish, S.R.A., Pearce, F.G., Hutton, C.A., Gerrard, J.A., Jameson, G.B. and Perugini, M.A. (2008) Conserved main-chain peptide distortions: a proposed role for Ile203 in catalysis by dihydrodipicolinate synthase. Protein Sci., 17, 2080-2090.
-
(2008)
Protein Sci.
, vol.17
, pp. 2080-2090
-
-
Dobson, R.C.J.1
Griffin, M.D.W.2
Devenish, S.R.A.3
Pearce, F.G.4
Hutton, C.A.5
Gerrard, J.A.6
Jameson, G.B.7
Perugini, M.A.8
-
3
-
-
0032500378
-
The 1. 25 A resolution refinement of the cholera toxin B-pentamer: evidence of peptide backbone strain at the receptor-binding site
-
Merritt, E.A., Kuhn, P., Sarfaty, S., Erbe, J.L., Holmes, R.K. and Hol, W.G. (1998) The 1.25 A resolution refinement of the cholera toxin B-pentamer: evidence of peptide backbone strain at the receptor-binding site. J. Mol. Biol., 282, 1043-1059.
-
(1998)
J. Mol. Biol.
, vol.282
, pp. 1043-1059
-
-
Merritt, E.A.1
Kuhn, P.2
Sarfaty, S.3
Erbe, J.L.4
Holmes, R.K.5
Hol, W.G.6
-
4
-
-
34547592557
-
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids
-
Davis, I.W., Leaver-Fay, A., Chen, V.B., Block, J.N., Kapral, G.J., Wang, X., Murray, L.W., Arendall, W.B., Snoeyink, J., Richardson, J.S. et al. (2007) MolProbity: all-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res., 35, W375-W383.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Davis, I.W.1
Leaver-Fay, A.2
Chen, V.B.3
Block, J.N.4
Kapral, G.J.5
Wang, X.6
Murray, L.W.7
Arendall, W.B.8
Snoeyink, J.9
Richardson, J.S.10
-
5
-
-
0034461614
-
Experimental evidence for the correlation of bond distances in peptide groups detected in ultrahigh-resolution protein structures
-
Esposito, L., Vitagliano, L., Zagari, A. and Mazzarella, L. (2000) Experimental evidence for the correlation of bond distances in peptide groups detected in ultrahigh-resolution protein structures. Protein Eng., 13, 825-828.
-
(2000)
Protein Eng
, vol.13
, pp. 825-828
-
-
Esposito, L.1
Vitagliano, L.2
Zagari, A.3
Mazzarella, L.4
-
6
-
-
0000671727
-
What happens to formamide during C-N bond rotation? Atomic and molecular energetics and molecular reactivity as a function of internal rotation
-
Laidig, K.E. and Cameron, L.M. (1993) What happens to formamide during C-N bond rotation? Atomic and molecular energetics and molecular reactivity as a function of internal rotation. Can. J. Chem., 71, 872-879.
-
(1993)
Can. J. Chem.
, vol.71
, pp. 872-879
-
-
Laidig, K.E.1
Cameron, L.M.2
-
7
-
-
0030010605
-
Experimentally observed conformation-dependent geometry and hidden strain in proteins
-
Karplus, P.A. (1996) Experimentally observed conformation-dependent geometry and hidden strain in proteins. Protein Sci., 5, 1406-1420.
-
(1996)
Protein Sci.
, vol.5
, pp. 1406-1420
-
-
Karplus, P.A.1
-
8
-
-
0033613813
-
Recognition of spatial motifs in protein structures
-
Kleywegt, G.J. (1999) Recognition of spatial motifs in protein structures. J. Mol. Biol., 285, 1887-1897.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 1887-1897
-
-
Kleywegt, G.J.1
-
9
-
-
23144449729
-
Fragment Finder: a web-based software to identify similar three-dimensional structural motif
-
Ananthalakshmi, P., Kumar, C.K., Jeyasimhan, M., Sumathi, K. and Sekar, K. (2005) Fragment Finder: a web-based software to identify similar three-dimensional structural motif. Nucleic Acids Res., 33, W85-W88.
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Ananthalakshmi, P.1
Kumar, C.K.2
Jeyasimhan, M.3
Sumathi, K.4
Sekar, K.5
-
10
-
-
58149193244
-
Protein segment finder: an online search engine for segment motifs in the PDB
-
Samson, A.O. and Levitt, M. (2009) Protein segment finder: an online search engine for segment motifs in the PDB. Nucleic Acids Res., 37, D224-D228.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Samson, A.O.1
Levitt, M.2
-
11
-
-
0037264189
-
CADB: Conformation Angles DataBase of proteins
-
Sheik, S.S., Ananthalakshmi, P., Bhargavi, G.R. and Sekar, K. (2003) CADB: Conformation Angles DataBase of proteins. Nucleic Acids Res., 31, 448-451.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 448-451
-
-
Sheik, S.S.1
Ananthalakshmi, P.2
Bhargavi, G.R.3
Sekar, K.4
-
12
-
-
48549093368
-
MSDmotif: exploring protein sites and motifs
-
Golovin, A. and Henrick, K. (2008) MSDmotif: exploring protein sites and motifs. BMC Bioinformatics, 9, 312.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 312
-
-
Golovin, A.1
Henrick, K.2
-
13
-
-
0043180474
-
PISCES: a protein sequence culling server
-
Wang, G. and Dunbrack, R.L. (2003) PISCES: a protein sequence culling server. Bioinformatics, 19, 1589-1591.
-
(2003)
Bioinformatics
, vol.19
, pp. 1589-1591
-
-
Wang, G.1
Dunbrack, R.L.2
-
14
-
-
0000243829
-
PROCHECK: a program to check the stereochemical quality of protein structures
-
Laskowski, R.A., MacArthur, M.W., Moss, D.S. and Thornton, J.M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr., 26, 283-291.
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
15
-
-
0020997912
-
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W. and Sander, C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
16
-
-
0037441653
-
Structure validation by Ca geometry: ∏ ψ and Cβ deviation
-
Lovell, S.C., Davis, I.W., Arendall, W.B. III, de Bakker, P.I.W., Word, J.M., Prisant, M.G., Richardson, J.S. and Richardson, D.C. (2003) Structure validation by Ca geometry: ∏, Ψ and Cβ deviation. Proteins: Struct. Func. Genet., 50, 437-450.
-
(2003)
Proteins: Struct. Func. Genet.
, vol.50
, pp. 437-450
-
-
Lovell, S.C.1
Davis, I.W.2
Arendall W.B. III3
de Bakker, P.I.W.4
Word, J.M.5
Prisant, M.G.6
Richardson, J.S.7
Richardson, D.C.8
-
17
-
-
65649092976
-
Biopython: freely available Python tools for computational molecular biology and bioinformatics
-
Cock, P.J.A., Antao, T., Chang, J.T., Chapman, B.A., Cox, C.J., Dalke, A., Friedberg, I., Hamelryck, T., Kauff, F., Wilczynski, B. et al. (2009) Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics, 25, 1422-1423.
-
(2009)
Bioinformatics
, vol.25
, pp. 1422-1423
-
-
Cock, P.J.A.1
Antao, T.2
Chang, J.T.3
Chapman, B.A.4
Cox, C.J.5
Dalke, A.6
Friedberg, I.7
Hamelryck, T.8
Kauff, F.9
Wilczynski, B.10
-
18
-
-
66349129121
-
On the occurrence of linear groups in proteins
-
Hollingsworth, S.A., Berkholz, D.S. and Karplus, P.A. (2009) On the occurrence of linear groups in proteins. Protein Sci., 18, 1321-1325.
-
(2009)
Protein Sci.
, vol.18
, pp. 1321-1325
-
-
Hollingsworth, S.A.1
Berkholz, D.S.2
Karplus, P.A.3
-
19
-
-
50049107805
-
Catalytic cycle of human glutathione reductase near 1 A resolution
-
Berkholz, D.S., Faber, H.R., Savvides, S.N. and Karplus, P.A. (2008) Catalytic cycle of human glutathione reductase near 1 A resolution. J. Mol. Biol., 382, 371-384.
-
(2008)
J. Mol. Biol.
, vol.382
, pp. 371-384
-
-
Berkholz, D.S.1
Faber, H.R.2
Savvides, S.N.3
Karplus, P.A.4
-
20
-
-
70349758444
-
Conformation dependence of backbone geometry in proteins
-
Berkholz, D.S., Shapovalov, M.V., Dunbrack, R.L. and Karplus, P.A. (2009) Conformation dependence of backbone geometry in proteins. Structure, 17, 1316-1325.
-
(2009)
Structure
, vol.17
, pp. 1316-1325
-
-
Berkholz, D.S.1
Shapovalov, M.V.2
Dunbrack, R.L.3
Karplus, P.A.4
-
21
-
-
24744467360
-
Atomic resolution structures of resting-state, substrate- and product-complexed Cu-nitrite reductase provide insight into catalytic mechanism
-
Antonyuk, S.V., Strange, R.W., Sawers, G., Eady, R.R. and Hasnain, S.S. (2005) Atomic resolution structures of resting-state, substrate- and product-complexed Cu-nitrite reductase provide insight into catalytic mechanism. Proc. Natl Acad. Sci. USA, 102, 12041-12046.
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 12041-12046
-
-
Antonyuk, S.V.1
Strange, R.W.2
Sawers, G.3
Eady, R.R.4
Hasnain, S.S.5
|