메뉴 건너뛰기




Volumn 37, Issue SUPPL. 1, 2009, Pages

Protein segment finder: An online search engine for segment motifs in the PDB

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; ATOM; COMPUTER INTERFACE; DISULFIDE BOND; HYDROGEN BOND; ONLINE SYSTEM; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CONFORMATION; PROTEIN DATA BANK; PROTEIN DATABASE; PROTEIN MOTIF; PROTEIN STRUCTURE; SEARCH ENGINE; STRUCTURAL HOMOLOGY;

EID: 58149193244     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn833     Document Type: Article
Times cited : (11)

References (14)
  • 1
    • 33847616971 scopus 로고    scopus 로고
    • Growth of novel protein structural data
    • Levitt,M. (2007) Growth of novel protein structural data. Proc. Natl Acad. Sci. USA, 104, 3183-3188.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 3183-3188
    • Levitt, M.1
  • 2
    • 0026754015 scopus 로고
    • Accurate modeling of protein conformation by automatic segment matching
    • Levitt,M. (1992) Accurate modeling of protein conformation by automatic segment matching. J. Mol. Biol., 226, 507-533.
    • (1992) J. Mol. Biol , vol.226 , pp. 507-533
    • Levitt, M.1
  • 4
    • 48549093368 scopus 로고    scopus 로고
    • MSDmotif: Exploring protein sites and motifs
    • Golovin,A. and Henrick,K. (2008) MSDmotif: Exploring protein sites and motifs. BMC Bioinformatics, 9, 312.
    • (2008) BMC Bioinformatics , vol.9 , pp. 312
    • Golovin, A.1    Henrick, K.2
  • 5
    • 0033613813 scopus 로고    scopus 로고
    • Recognition of spatial motifs in protein structures
    • Kleywegt,G.J. (1999) Recognition of spatial motifs in protein structures. J. Mol. Biol., 285, 1887-1897.
    • (1999) J. Mol. Biol , vol.285 , pp. 1887-1897
    • Kleywegt, G.J.1
  • 6
    • 23144449729 scopus 로고    scopus 로고
    • Fragment Finder: A web-based software to identify similar three-dimensional structural motif
    • Ananthalakshmi,P., Kumar Ch,K., Jeyasimhan,M., Sumathi,K. and Sekar,K. (2005) Fragment Finder: A web-based software to identify similar three-dimensional structural motif. Nucleic Acids Res., 33, W85-W88.
    • (2005) Nucleic Acids Res , vol.33
    • Ananthalakshmi, P.1    Kumar Ch, K.2    Jeyasimhan, M.3    Sumathi, K.4    Sekar, K.5
  • 7
    • 33747859069 scopus 로고    scopus 로고
    • PAST: Fast structurebased searching in the PDB
    • Taubig,H., Buchner,A. and Griebsch,J. (2006) PAST: Fast structurebased searching in the PDB. Nucleic Acids Res., 34, W20-W23.
    • (2006) Nucleic Acids Res , vol.34
    • Taubig, H.1    Buchner, A.2    Griebsch, J.3
  • 8
    • 0031461057 scopus 로고    scopus 로고
    • SS3D-P2: A three dimensional substructure search program for protein motifs based on secondary structure elements
    • Kato,H. and Takahashi,Y. (1997) SS3D-P2: A three dimensional substructure search program for protein motifs based on secondary structure elements. Comput. Appl. Biosci., 13, 593-600.
    • (1997) Comput. Appl. Biosci , vol.13 , pp. 593-600
    • Kato, H.1    Takahashi, Y.2
  • 9
    • 0030850641 scopus 로고    scopus 로고
    • Rapid protein fragment search using hash functions based on the Fourier transform
    • Akutsu,T., Onizuka,K. and Ishikawa,M. (1997) Rapid protein fragment search using hash functions based on the Fourier transform. Comput. Appl. Biosci., 13, 357-364.
    • (1997) Comput. Appl. Biosci , vol.13 , pp. 357-364
    • Akutsu, T.1    Onizuka, K.2    Ishikawa, M.3
  • 11
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch,W. and Sander,C. (1983) Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 13
    • 0028961335 scopus 로고
    • SCOP: A structural classi.cation of proteins database for the investigation of sequences and structures
    • Murzin,A.G., Brenner,S.E., Hubbard,T. and Chothia,C. (1995) SCOP: A structural classi.cation of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247, 536-540.
    • (1995) J. Mol. Biol , vol.247 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.