메뉴 건너뛰기




Volumn 81, Issue 4, 2009, Pages 389-406

Comparison of genetic distance measures using human SNP genotype data

Author keywords

Cavalli Sforza and Edwards distance; Genetic distance; Genetic distance measures; Human Genome Diversity Panel (HGDP); Latters distance; Migration history; Neis minimum distance; Neis standard genetic distance; Population genetics; Population substructure; Procrustes analysis; Reynolds distance

Indexed keywords


EID: 75149154218     PISSN: 00187143     EISSN: 15346617     Source Type: Journal    
DOI: 10.3378/027.081.0401     Document Type: Article
Times cited : (23)

References (40)
  • 1
    • 0036911353 scopus 로고    scopus 로고
    • Interrogating a high-density SNP map for signatures of natural selection
    • Akey, J. M., G. Zhang, K. Zhang et al. 2002. Interrogating a high-density SNP map for signatures of natural selection. Genome Res. 12:1805-1814.
    • (2002) Genome Res. , vol.12 , pp. 1805-1814
    • Akey, J.M.1    Zhang, G.2    Zhang, K.3
  • 2
  • 3
    • 0037066430 scopus 로고    scopus 로고
    • A human genome diversity cell line panel
    • Cann, H. M., C. de Toma, L. Cazes et al. 2002. A human genome diversity cell line panel. Science 296:261-262.
    • (2002) Science , vol.296 , pp. 261-262
    • Cann, H.M.1    De Toma, C.2    Cazes, L.3
  • 4
    • 0037442092 scopus 로고    scopus 로고
    • Population stratification and spurious allelic association
    • Cardon, L. R., and L. J. Palmer. 2003. Population stratification and spurious allelic association. Lancet 361:598-604.
    • (2003) Lancet , vol.361 , pp. 598-604
    • Cardon, L.R.1    Palmer, L.J.2
  • 5
    • 0014082615 scopus 로고
    • Phylogenetic analysis: Models and estimation procedures
    • Cavalli-Sforza, L. L., and A. W. F. Edwards. 1967. Phylogenetic analysis: Models and estimation procedures. Am. J. Hum. Genet. 19:233-257.
    • (1967) Am. J. Hum. Genet. , vol.19 , pp. 233-257
    • Cavalli-Sforza, L.L.1    Edwards, A.W.F.2
  • 6
    • 0015818251 scopus 로고
    • Analyses of gene frequencies
    • Cockerham, C. C. 1973. Analyses of gene frequencies. Genetics 74:679-700.
    • (1973) Genetics , vol.74 , pp. 679-700
    • Cockerham, C.C.1
  • 7
    • 0023503873 scopus 로고
    • Correlations, descent measures: Drift with migration and mutation
    • Cockerham, C. C., and B. S. Weir. 1987. Correlations, descent measures: Drift with migration and mutation. Proc. Natl. Acad. Sci. USA 23:8512-8514.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.23 , pp. 8512-8514
    • Cockerham, C.C.1    Weir, B.S.2
  • 8
    • 0003437299 scopus 로고    scopus 로고
    • Version 3.6 Distributed by the author, Department of Genome Sciences, University of Washington, Seattle
    • Felsenstein, J. 2005. PHYLIP (Phylogeny Inference Package), Version 3.6. Distributed by the author, Department of Genome Sciences, University of Washington, Seattle.
    • (2005) PHYLIP (Phylogeny Inference Package)
    • Felsenstein, J.1
  • 9
    • 12144285594 scopus 로고    scopus 로고
    • Assessing the impact of population stratification on genetic association studies
    • Freedman, M. L., D. Reich, K. L. Penney et al. 2004. Assessing the impact of population stratification on genetic association studies. Nat. Genet. 36:388-393.
    • (2004) Nat. Genet. , vol.36 , pp. 388-393
    • Freedman, M.L.1    Reich, D.2    Penney, K.L.3
  • 10
    • 0002968611 scopus 로고
    • Statistical methods of comparing different multivariate analyses of the same data
    • F. Hodson, D. Kendall, and P. Tautu, eds. Edinburgh, Scotland: Edinburgh University Press
    • Gower, J. C. 1971. Statistical methods of comparing different multivariate analyses of the same data. In Mathematics in the Archaeological and Historical Sciences, F. Hodson, D. Kendall, and P. Tautu, eds. Edinburgh, Scotland: Edinburgh University Press, 138-149.
    • (1971) Mathematics in the Archaeological and Historical Sciences , pp. 138-149
    • Gower, J.C.1
  • 11
    • 0001886818 scopus 로고
    • General Procrustes analysis
    • Gower, J. C. 1975. General Procrustes analysis. Psychometrika 40:33-51.
    • (1975) Psychometrika , vol.40 , pp. 33-51
    • Gower, J.C.1
  • 12
    • 11244279011 scopus 로고    scopus 로고
    • An Icelandic example of the impact of population structure on association studies
    • Helgason, A., B. Yngvadóttir, B. Hrafnkelsson et al. 2005. An Icelandic example of the impact of population structure on association studies. Nat. Genet. 1:90-95.
    • (2005) Nat. Genet. , vol.1 , pp. 90-95
    • Helgason, A.1    Yngvadóttir, B.2    Hrafnkelsson, B.3
  • 13
    • 0035993652 scopus 로고    scopus 로고
    • Evolutionary and statistical properties of three genetic distances
    • Kalinowski, S. T. 2002. Evolutionary and statistical properties of three genetic distances. Mol. Ecol. 11:1263-1273.
    • (2002) Mol. Ecol. , vol.11 , pp. 1263-1273
    • Kalinowski, S.T.1
  • 14
    • 0000699795 scopus 로고
    • Process leading to quasi-fixation of genes in natural populations due to random fluctuation of selection intensities
    • Kimura, M. 1954. Process leading to quasi-fixation of genes in natural populations due to random fluctuation of selection intensities. Genetics 39:280-295.
    • (1954) Genetics , vol.39 , pp. 280-295
    • Kimura, M.1
  • 15
    • 75949146309 scopus 로고
    • The number of alleles that can be maintained in a finite population
    • Kimura, M., and J. F. Crow. 1964. The number of alleles that can be maintained in a finite population. Genetics 49:725-738.
    • (1964) Genetics , vol.49 , pp. 725-738
    • Kimura, M.1    Crow, J.F.2
  • 16
    • 75149174133 scopus 로고
    • A comparison of some distance measures applicable to multinomial data, using a rotational fit technique
    • Krzanowski, W. J. 1971. A comparison of some distance measures applicable to multinomial data, using a rotational fit technique. Biometrics 27:1062-1068.
    • (1971) Biometrics , vol.27 , pp. 1062-1068
    • Krzanowski, W.J.1
  • 17
    • 0015310208 scopus 로고
    • Selection in finite populations with multiple alleles. III. Genetic divergence with centripetal selection and mutation
    • Latter, B. D. 1972. Selection in finite populations with multiple alleles. III. Genetic divergence with centripetal selection and mutation. Genetics 70:475-490.
    • (1972) Genetics , vol.70 , pp. 475-490
    • Latter, B.D.1
  • 18
    • 0036655768 scopus 로고    scopus 로고
    • Measuring genetic distances between breeds: Use of some distances in various short-term evolution models
    • Laval, G., M. San Cristobal, and C. Chevalet. 2002. Measuring genetic distances between breeds: Use of some distances in various short-term evolution models. Genet. Sel. Evol. 4:481-507.
    • (2002) Genet. Sel. Evol. , vol.4 , pp. 481-507
    • Laval, G.1    San Cristobal, M.2    Chevalet, C.3
  • 19
    • 39749181521 scopus 로고    scopus 로고
    • Worldwide human relationships inferred from genomewide patterns of variation
    • Li, J. Z., D. M. Absher, H. Tang et al. 2008. Worldwide human relationships inferred from genomewide patterns of variation. Science 319:1100-1104.
    • (2008) Science , vol.319 , pp. 1100-1104
    • Li, J.Z.1    Absher, D.M.2    Tang, H.3
  • 20
    • 34347396549 scopus 로고    scopus 로고
    • A unified approach for assessing agreement for continuous and categorical data
    • Lin, L., A. S. Hedayat, and W. Wu. 2007. A unified approach for assessing agreement for continuous and categorical data. J. Biopharm. Stat. 4:629-652.
    • (2007) J. Biopharm. Stat. , vol.4 , pp. 629-652
    • Lin, L.1    Hedayat, A.S.2    Wu, W.3
  • 21
    • 33746493901 scopus 로고    scopus 로고
    • A geographically explicit genetic model of worldwide human-settlement history
    • Liu, H., F. Prugnolle, A. Manica et al. 2006. A geographically explicit genetic model of worldwide human-settlement history. Am. J. Hum. Genet. 79:230-237.
    • (2006) Am. J. Hum. Genet. , vol.79 , pp. 230-237
    • Liu, H.1    Prugnolle, F.2    Manica, A.3
  • 22
    • 2442585696 scopus 로고    scopus 로고
    • The effects of human population structure on large genetic association studies
    • Marchini, J., L. R. Cardon, M. S. Phillips et al. 2004. The effects of human population structure on large genetic association studies. Nat. Genet. 36:512-517.
    • (2004) Nat. Genet. , vol.36 , pp. 512-517
    • Marchini, J.1    Cardon, L.R.2    Phillips, M.S.3
  • 23
    • 0000655270 scopus 로고
    • Genetic distance between populations
    • Nei, M. 1972 Genetic distance between populations. Am. Nat. 106:283-292.
    • (1972) Am. Nat. , vol.106 , pp. 283-292
    • Nei, M.1
  • 24
    • 0002124650 scopus 로고
    • The theory and estimation of genetic distance
    • N. E. Morton, ed. Honolulu: University Press of Hawaii
    • Nei, M. 1973. The theory and estimation of genetic distance. In Genetic Structure in Populations, N. E. Morton, ed. Honolulu: University Press of Hawaii, 45-54.
    • (1973) Genetic Structure in Populations , pp. 45-54
    • Nei, M.1
  • 25
    • 0018147653 scopus 로고
    • Estimation of average heterozygosity and genetic distance from a small number of individuals
    • Nei, M. 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 3:583-590.
    • (1978) Genetics , vol.3 , pp. 583-590
    • Nei, M.1
  • 26
    • 0020965531 scopus 로고
    • Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data
    • Nei, M., F. Tajima, and Y. Yateno. 1983. Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data. J. Mol. Evol. 19:153-170.
    • (1983) J. Mol. Evol. , vol.19 , pp. 153-170
    • Nei, M.1    Tajima, F.2    Yateno, Y.3
  • 28
    • 0030782517 scopus 로고    scopus 로고
    • An empirical evaluation of genetic distance statistics using microsatellite data from bear (Ursidae) populations
    • Paetkau, D., L. P. Waits, P. L. Clarkson et al. 1997. An empirical evaluation of genetic distance statistics using microsatellite data from bear (Ursidae) populations. Genetics 147:1943-1957.
    • (1997) Genetics , vol.147 , pp. 1943-1957
    • Paetkau, D.1    Waits, L.P.2    Clarkson, P.L.3
  • 29
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • Page, R. D. 1996. TreeView: An application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12:357-358.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 357-358
    • Page, R.D.1
  • 30
    • 1642572507 scopus 로고    scopus 로고
    • Microsatellite variation and the differentiation of modern humans
    • Pérez-Lezaun, A., F. Calafell, E. Mateu et al. 1997. Microsatellite variation and the differentiation of modern humans. Hum. Genet. 1:1-7.
    • (1997) Hum. Genet. , vol.1 , pp. 1-7
    • Pérez-Lezaun, A.1    Calafell, F.2    Mateu, E.3
  • 31
    • 27644509150 scopus 로고    scopus 로고
    • Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa
    • Ramachandran, S., O. Deshpande, C. C. Roseman et al. 2005. Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa. Proc. Natl. Acad. Sci. USA 102:15,942-15,947.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 15942-15947
    • Ramachandran, S.1    Deshpande, O.2    Roseman, C.C.3
  • 32
    • 12344325846 scopus 로고    scopus 로고
    • Genetical and mathematical properties of similarity and dissimilarity coefficients applied in plant breeding and seed bank management
    • Reif, J. C., A. E. Melchinger, and M. Frisch. 2005. Genetical and mathematical properties of similarity and dissimilarity coefficients applied in plant breeding and seed bank management. Crop Sci. 45:1-7.
    • (2005) Crop Sci. , vol.45 , pp. 1-7
    • Reif, J.C.1    Melchinger, A.E.2    Frisch, M.3
  • 33
    • 0021038163 scopus 로고
    • Estimation of the coancestry coefficient: Basis for a short-term genetic distance
    • Reynolds, J., B. S. Weir, and C. C. Cockerham. 1983. Estimation of the coancestry coefficient: Basis for a short-term genetic distance. Genetics 105:767-779.
    • (1983) Genetics , vol.105 , pp. 767-779
    • Reynolds, J.1    Weir, B.S.2    Cockerham, C.C.3
  • 34
    • 0037147189 scopus 로고    scopus 로고
    • Genetic structure of human populations
    • Rosenberg, N. A., J. K. Pritchard, J. L. Weber et al. 2002. Genetic structure of human populations. Science 298:765-779.
    • (2002) Science , vol.298 , pp. 765-779
    • Rosenberg, N.A.1    Pritchard, J.K.2    Weber, J.L.3
  • 36
    • 0029786076 scopus 로고    scopus 로고
    • Genetic distance and reconstruction of phylogenetic trees from microsatellite DNA
    • Takezaki, N., and M. Nei. 1996. Genetic distance and reconstruction of phylogenetic trees from microsatellite DNA. Genetics 144:389-399.
    • (1996) Genetics , vol.144 , pp. 389-399
    • Takezaki, N.1    Nei, M.2
  • 37
    • 40849142607 scopus 로고    scopus 로고
    • Empirical tests of the reliability of phylogenetic trees constructed with microsatellite DNA
    • Takezaki, N., and M. Nei. 2008. Empirical tests of the reliability of phylogenetic trees constructed with microsatellite DNA. Genetics 178:385-392.
    • (2008) Genetics , vol.178 , pp. 385-392
    • Takezaki, N.1    Nei, M.2
  • 38
    • 0017754715 scopus 로고
    • The use of the FST statistic of Wright for estimating the effects of genetic drift, selection, and migration populations, with special reference to Ireland
    • Tills, D. 1977. The use of the FST statistic of Wright for estimating the effects of genetic drift, selection, and migration populations, with special reference to Ireland. Hum. Hered. 27:153-159.
    • (1977) Hum. Hered. , vol.27 , pp. 153-159
    • Tills, D.1
  • 40
    • 84890417804 scopus 로고
    • The genetical structure of populations
    • Wright, S. 1951. The genetical structure of populations. Ann. Eugen. 15:323-354.
    • (1951) Ann. Eugen. , vol.15 , pp. 323-354
    • Wright, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.