Docking simulation and competitive experiments validate the interaction between the 2, 5-xylidine inhibitor and rigidoporus lignosus laccase

Journal of Biomolecular Structure and Dynamics

Volumn 27, Issue 4, 2010, Pages 501-509

  Cambria, Maria Teresa ^a   Di Marino, Daniele ^b   Falconi, Mattia ^b   Garavaglia, Silvia ^c   Cambria, Antonio ^d  

^a UNIVERSITY OF CATANIA   (Italy)

^b UNIVERSITY OF ROME TOR VERGATA   (Italy)

^c UNIVERSITY OF EASTERN PIEDMONT   (Italy)

^d NATIONAL INSTITUTE OF BIOSTRUCTURES AND BIOSYSTEMS   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

2,5 XYLIDINE INHIBITOR; AROMATIC AMINE; COPPER COMPLEMENTED LACCASE; COPPER ION; DOCKING PROTEIN; LACCASE; PLANT EXTRACT; UNCLASSIFIED DRUG;

ARTICLE; BINDING AFFINITY; HYDROPHOBICITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RIGIDOPORUS LIGNOSUS; SEQUENCE ALIGNMENT; STRUCTURE ANALYSIS; TRAMETES VERSICOLOR; WHITE ROT FUNGUS; X RAY;

AMINO ACID SEQUENCE; ANILINE COMPOUNDS; BASIDIOMYCOTA; BINDING SITES; BINDING, COMPETITIVE; CATALYTIC DOMAIN; COMPUTER SIMULATION; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; LACCASE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; SEQUENCE HOMOLOGY, AMINO ACID;

FUNGI; RIGIDOPORUS MICROPORUS; TRAMETES VERSICOLOR;

EID: 75149114199     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.2010.10507334     Document Type: Article

References (27)

1. Messerschmidt, A., ed. 1997. Multicopper oxidases. Singapore:World Scientific.
2. Baldrian, P., 2005. FEMS Microbiol Rev, 30:215–242.
3. Garavaglia, S., Cambria, M. T., Miglio, M., Ragusa, S., Iacobazzi, V., Palmieri, F., D'Ambrosio, C., Scaloni, A., and Rizzi, M., 2004. J Mol Biol, 342:1519–1531.
4. Piontek, K., Antorini, M., and Choinowski, T., 2002. J Biol Chem, 277:37663–37669.
5. Bollag, J. M., 1991. J Environ Qual, 32:63–69.
6. Claus, H., Faber, G., and Konig, H., 2002. Appl Microbiol Biotechnol, 59:672–678.
7. Torres, E., Bustos-Jaimes, I., and Le Borgne, S., 2003. Appl Catal B-Environ, 46:1–15.
8. Tsioulpas, A., Dimou, D., and Iconomou, D., 2002. Biores Thechnol, 84:25–257. G
9. Bonomo, R. P., Boudet, A. M., Cozzolino, R., Rizzarelli, E., Santoro, A. M., Sterjiades, R., and Zappalà, R., 1998. J Inorg Biochem, 71:205–211.
10. Cambria, M. T., Minniti, Z., Librando, V., and Cambria, A., 2008. Appl Biochem Biothenol, 149:1–8.
11. Suresh, P. S., Kumar, A., Kumar, R., and Singh, V. P., 2008. J Mol Graph Model, 26:845–849.
12. Enguita, F. J., Martins, L. O., Henriques, A. O., and Carrondo, M. A., 2003. J Biol Chem, 278:19416–19425.
13. Enguita, F. J., Marcal, D., Martins, L. O., Grenha, R., Henriques, A. O., Lindley, P. F., and Carrondo, M. A., 2004. J Biol Chem, 279:23472–23476.
14. Matera, I., Gullotto, A., Tilli, S., Ferraroni, M., Scozzafava, A., and Briganti, F., 2008. Inorg Chim Acta, 361:4129–4137.
15. Bertrand, T., Jolivalt, C., Briozzo, P., Caminade, E., Joly, N., Madzak, C., and Mougin, C., 2002. Biochemistry, 41:7325–7333.
16. Efremov, R. G., Chugunov, A. O., Pyrkov, T. V., Priestle, J. P., Arseniev, A. S., and Jacoby, E., 2007. Curr Med Chem, 14:393–415.
17. Machezynski, M. C., Gray, H. B., and Richards, J. H., 2002. J Inorg Biochem, 88:375–380.
18. Morozov, A. V., and Kortemme, T., 2005. Adv Protein Chem, 72:1–38.
19. Yanagisawa, S., Banfield, M. J., and Dennison, C., 2006. Biochemistry, 45:8812–8822.
20. Bikadi, Z., Demko, L., and Hazai, E., 2007. Arch Biochem Biophys, 461:225–234.
21. Guex, N., and Peitsch, M. C., 1997. Electrophoresis, 18:2714–2723.
22. Needleman, S. B., and Wunsch, C. D., 1970. J Mol Biol, 48:443–453.
23. Orengo, C. A., and Taylor, W. R., 1996. Methods Enzymol, 266:617–635.
24. Morris, G. M., Goodsell, D. S., Halliday, R. S., Huey, R., Hart, W. E., Belew, R. K., and Olson, A. J., 1999. J Comp Chem, 19:1639–1662.
25. Bertrand, T., Jolivalt, C., Caminade, E., Joly, N., Mougin, C., and Briozzo, P., 2002. Acta Crystallogr D Biol Crystallogr, 58:319–321.
26. Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C., and Ferrin, T. E., 2004. J Comput Chem, 25:1605–1612.
27. DeLano, W. L., 2002. (http://www.pymol.org)