A rapid multiplex assay for nucleic acid-based diagnostics

Journal of Microbiological Methods

Volumn 80, Issue 2, 2010, Pages 155-163

  Deshpande, Alina ^a   Gans, Jason ^a   Graves, Steven W ^b   Green, Lance ^a   Taylor, Laura ^a   Kim, Heung Bok ^a   Kunde, Yuliya A ^a   Leonard, Pascale M ^c   Li, Po E ^a   Mark, Jacob ^a   Song, Jian ^a   Vuyisich, Momchilo ^a   White, P Scott ^a  

^a LOS ALAMOS NATIONAL LABORATORY   (United States)

^b University of New Mexico   (United States)

^c NEW MEXICO DEPARTMENT OF HEALTH   (United States)

Author keywords

Ligation based assay; Luminex; Microsphere array; MOL PCR; Multiplex diagnostics; Surveillance

Indexed keywords

MICROSPHERE;

ARTICLE; BACILLUS ANTHRACIS; BIOLOGICAL WARFARE AGENT; CONTROLLED STUDY; FRANCISELLA TULARENSIS; MULTIPLEX OLIGONUCLEOTIDE LIGATION POLYMERASE CHAIN REACTION; NONHUMAN; NUCLEIC ACID ANALYSIS; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; SINGLE NUCLEOTIDE POLYMORPHISM; YERSINIA PESTIS;

BACILLUS ANTHRACIS; CLINICAL LABORATORY TECHNIQUES; FRANCISELLA TULARENSIS; HUMANS; LIGASE CHAIN REACTION; MICROARRAY ANALYSIS; MICROSPHERES; MOLECULAR DIAGNOSTIC TECHNIQUES; YERSINIA PESTIS;

BACILLUS ANTHRACIS; FRANCISELLA TULARENSIS; YERSINIA PESTIS;

EID: 74849123420     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2009.12.001     Document Type: Article

References (22)

1. Baner J., Gyarmati P., Yacoub A., Hakhverdyan M., Stenberg J., Ericsson O., Nilsson M., Landegren U., and Belak S. Microarray-based molecular detection of foot-and-mouth disease, vesicular stomatitis and swine vesicular disease viruses, using padlock probes. Journal of Virological Methods 143 (2007) 200-206
2. Bergval I.L., Vijzelaar R.N.C.P., Dalla Costa E.R., Schuitema A.R.J., Oskam L., Kritski A.L., Klatser P.R., and Anthony R.M. Development of multiplex assay for rapid characterization of Mycobacterium tuberculosis. Journal of Clinical Microbiology 46 (2008) 689-699
3. Dawson, D.B., Lundquist, P. 2006. FlexMAP-MLPA identifies copy number changes in the NPC1 gene for four patients with Niemann-Pick type C. HGVS/HGNC Helsinki Meeting: May 31, 2006; Helsinki.
4. Fan J.B., Oliphant A., Shen R., Kermani B.G., Garcia F., Gunderson K.L., Hansen M., Steemers F., Butler S.L., Deloukas P., Galver L., Hunt S., Mcbride C., Bibikova M., Rubano T., Chen J., Wickham E., Doucet D., Chang W., Campbell D., Zhang B., Kruglyak S., Bentley D., Haas J., Rigault P., Zhou L., Stuelpnagel J., and Chee M.S. Highly Parallel SNP Genotyping. Cold Spring Harbor Symposia on Quantitative Biology. Cold Spring Harbor Laboratory Press 68 (2003) 69-78
5. Fox J.D. Nucleic acid amplification tests for detection of respiratory viruses. Journal of Clinical Virology 40 Suppl 1 S (2007) 15-23
6. Gans J.D., and Wolinsky M. Improved assay-dependent searching of nucleic acid sequence databases. Nucleic Acids Research 36 (2008) e74
7. Hindson B.J., Reid S.M., Baker B.R., Ebert K., Ferris N.P., Bentley Tammero L.F., Lenhoff R.J., Naraghi-Arani P., Vitalis E.A., Slezak T.R., Hullinger P.J., and King D.P. Diagnostic evaluation of multiplex reverse transcription-PCR microsphere array assay for detection of foot-and-mouth and look-alike disease viruses. Journal of Clinical Microbiology 46 (2008) 1081-1089
8. Jalali G.R., Vorstman J.A., Errami A., Vijzelaar R., Biegel J., Shaikh T., and Emanuel B.S. Detailed analysis of 22q11.2 with a high density MLPA probe set. Human Mutation 29 (2008) 433-440
9. Kaderali L., Deshpande A., Nolan J.P., and White P.S. Primer-design for multiplex genotyping. Nucleic Acids Research 31 (2003) 1796-1802
10. Kozlowski P., Jasinska A.J., and Kwiatkowski D.J. New applications and developments in the use of multiplex ligation-dependent probe amplification. Electrophoresis 29 (2008) 4627-4636
11. Lindler L.E., Fan W., and Jahan N. Detection of Ciprofloxacin-resistant Yersinia pestis by fluorogenic PCR using the Lightcycler. Journal of Clinical Microbiology 39 (2001) 3649-3655
12. Mark J.A., Green L.D., Deshpande A., and White P.S. System Integration and Development for Biological Warfare Agent Surveillance (2007), Optics and Photonics in Global Homeland Security III. Defense and Security, Proceedings of SPIE
13. Potter A.B. The genetic affinities of the prehistoric people of San Clemente Island, California: an analysis of ancient DNA. University of Oregon Doctoral Thesis AAT 3136440 (2004) 1-168
14. Price L.B., Vogler A., Pearson T., Busch J.D., Schupp J.M., and Keim P. In Vitro selection and characterization of Bacillus anthracis mutants with high-level resistance to Ciprofloxacin. Antimicrobial Agents and Chemotherapy 47 (2003) 2362-2365
15. Reijans M., Dingemans G., Klaassen C.H., Meis J.F., Keijdener J., Mulders M., Eadie K., van Leeuwen W., van Belkum A., Horrevorts A.M., and Simons G. RespiFinder: a new multiparameter test to differentially identify fifteen respiratory viruses. Journal of Clinical Microbiology 46 (2008) 1232-1240
16. Schouten J.P., McElgunn C.J., Waaijer R., Zwijnenburg D., Diepvens F., and Pals G. Relative quantification of 40 nucleic acid sequences by multiplex ligation-dependent probe amplification. Nucleic Acids Research 30 (2002) e57
17. Sørensen K.M., Andersen P.S., Larsen L.A., Schwartz M., Schouten J.P., and Nygren A.O.H. Multiplex ligation-dependent probe amplification technique for copy number analysis on small amounts of DNA material. Analytical Chemistry 80 (2008) 9363-9368
18. Svensson K., Larsson P., Johansson D., Mona Byström M., Forsman M., and Johansson A. Evolution of subspecies of Francisella tularensis. Journal of Bacteriology 187 (2005) 3903-3908
19. Terefework Z., Pham C.L., Prosperi A.C., Entius M.M., Errami A., van Spanning R.J.M., Zaura E., ten Cate J.M., and Crielaard W. MLPA diagnostics of complex microbial communities: relative quantification of bacterial species in oral biofilms. Journal of Microbiological Methods 75 (2008) 558-565
20. Valiant L.G., and Vazirani V.V. NP is as easy as detecting unique solutions. Theoretical Computer Science 47 (1986) 85-93
21. Vora G.J., Meador C.E., Stenger D.A., and Andreadis J.D. Nucleic acid amplification strategies for DNA microarray-based pathogen detection. Applied and Environmental Microbiology 70 (2004) 3047-3054
22. Wilson W.J., Erler A.M., Nasarabadi S.L., Skowronski E.W., and Imbro P.M. A multiplex PCR-coupled liquid bead array for the simultaneous detection of four biothreat agents. Molecular and Cellular Probes 19 (2005) 137-144