RespiFinder: A new multiparameter test to differentially identify fifteen respiratory viruses

Journal of Clinical Microbiology

Volumn 46, Issue 4, 2008, Pages 1232-1240

  Reijans, Martin ^a,b   Dingemans, Gijs ^a,b   Klaassen, Corné H ^a   Meis, Jacques F ^a   Keijdener, Judith ^b   Mulders, Brit ^b   Eadie, Kimberly ^c   Van Leeuwen, Willem ^c   Van Belkum, Alex ^c   Horrevorts, Alphons M ^a   Simons, Guus ^b  

^a CANISIUS WILHELMINA HOSPITAL   (Netherlands)

^b PathoFinder BV   (Netherlands)

^c ERASMUS MEDICAL CENTER   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOVIRUS; ARTICLE; CHROMATOGRAPHY; CONTROLLED STUDY; CORONAVIRUS; DIAGNOSTIC ACCURACY; DIAGNOSTIC KIT; DNA PROBE; DNA VIRUS; GENE AMPLIFICATION; HUMAN; IMMUNOASSAY; INFLUENZA VIRUS A; INFLUENZA VIRUS A H5N1; INFLUENZA VIRUS B; MAJOR CLINICAL STUDY; METAPNEUMOVIRUS; PARAINFLUENZA VIRUS 1; PARAINFLUENZA VIRUS 2; PARAINFLUENZA VIRUS 4; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; RESPIRATORY SYNCYTIAL PNEUMOVIRUS; RESPIRATORY VIRUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RHINOVIRUS; RNA VIRUS; SENSITIVITY AND SPECIFICITY; VIRUS IDENTIFICATION; ADULT; CHILD; CLASSIFICATION; EVALUATION; GENETICS; ISOLATION AND PURIFICATION; NUCLEIC ACID AMPLIFICATION; PRESCHOOL CHILD; RESPIRATORY TRACT DISEASE; RNA VIRUS INFECTION; VIROLOGY; VIRUS CULTURE; VIRUS INFECTION;

ADENOVIRIDAE; CORONAVIRUS; DNA VIRUSES; HUMAN METAPNEUMOVIRUS; HUMAN PARAINFLUENZA VIRUS 1; HUMAN PARAINFLUENZA VIRUS 2; INFLUENZA A VIRUS; INFLUENZA B VIRUS; MONOPLEX; RESPIRATORY SYNCYTIAL VIRUS; RHINOVIRUS; RICE STRIPE VIRUS;

PRIMER DNA;

ADULT; CHILD; CHILD, PRESCHOOL; DNA PRIMERS; DNA VIRUSES; HUMANS; NUCLEIC ACID AMPLIFICATION TECHNIQUES; RESPIRATORY TRACT DISEASES; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA VIRUS INFECTIONS; RNA VIRUSES; SENSITIVITY AND SPECIFICITY; VIRUS CULTIVATION; VIRUS DISEASES;

EID: 42449155952     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.02294-07     Document Type: Article

References (36)

1. Allander, T., M. T. Tammi, M. Eriksson, A. Bjerkner, A. Tiveljung-Lindell, and B. Andersson. 2005. Cloning of a human parvovirus by molecular screening of respiratory tract samples. Proc. Natl. Acad. Sci. USA 102:12891-12896.
2. Beld, M., R. Minnaar, J. Weel, C. Sol, M. Damen, H. van der Avoort, P. Wertheim-van Dillen, A. van Breda, and R. Boom. 2004. Highly sensitive assay for detection of enterovirus in clinical specimens by reverse transcription-PCR with an armored RNA internal control. J. Clin. Microbiol. 42:3059-3064.
3. Coiras, M. T., J. C. Aguilar, M. L. Garcia, I. Casas, and P. Perez-Brena. 2004. Simultaneous detection of fourteen respiratory viruses in clinical specimens by two multiplex reverse transcription nested-PCR assays. J. Med. Virol. 72:484-495.
4. Drosten, C., S. Guther, W. Preiser, S. van der Werf, H. R. Brodt, S. Becker, H. Rabenau, M. Panning, L. Kolesnikova, R. A. Fouchier, A. Berger, A. M. Burguiere, J. Cinatl, M. Eickmann, N. Escriou, K. Grywna, S. Kramme, J. C. Manuguerra, S. Muller, V. Rickerts, M. Sturmer, S. Vieth, H. D. Klenk, A. D. Osterhaus, H. Schmitz, and H. W. Doerr. 2003. Identification of a novel coronavirus in patients with severe acute respiratory syndrome. N. Engl. J. Med. 348:1967-1976.
5. Effler, P. V., M. C. Ieong, T. Tom, and M. Nakata. 2002. Enhancing public health surveillance for influenza virus by incorporating newly available rapid diagnostic tests. Emerg. Infect. Dis. 8:23-28.
6. Eidering, E., C. A. Spek, H. L. Aberson, A. Grummels, I. A. Derks, A. F. de Vos, C. J. McElgunn, and J. P. Schouten. 2003. Expression profiling via novel multiplex assay allows rapid assessment of gene regulation in defined signalling pathways. Nucleic Acids Res. 31:e153.
7. Erdman, D. D., G. A. Weinberg, K. M. Edwards, F. J. Walker, B. C. Anderson, J. Winter, M. Gonzalez, and L. J. Anderson. 2003. GeneScan reverse transcription-PCR assay for detection of six common respiratory viruses in young children hospitalized with acute respiratory illness. J. Clin. Microbiol. 41:4298-4303.
8. Falsey, A. R., E. E. Walsh, and F. G. Hayden. 2002. Rhinovirus and coronavirus infection-associated hospitalizations among older adults. J. Infect. Dis. 185:1338-1341.
9. File, T. M. 2003. Community-acquired pneumonia. Lancet 362:1991-2001.
10. Freymuth, F., A. Vabret, D. Cuvillon-Nimal, S. Simon, J. Dina, L. Legrand, S. Gouarin, J. Petitjean, P. Eckart, and J. Brouard. 2006. Comparison of multiplex PCR assays and conventional techniques for the diagnostic of respiratory virus infections in children admitted to hospital with an acute respiratory illness. J. Med. Virol. 78:1498-1504.
11. Greenberg, S. B. 2002. Respiratory viral infections in adults. Curr. Opin. Pulm. Med. 8:201-208.
12. Grondahl, B., W. Puppe, A. Hoppe, I. Kuhne, J. A. Weigl, and H. J. Schmitt. 1999. Rapid identification of nine microorganisms causing acute respiratory tract infections by single-tube multiplex reverse transcription-PCR: feasibility study. J. Clin. Microbiol. 37:1-7.
13. Gunson, R. N., T. C. Collins, and W. F. Carman. 2005. Real-time RT-PCR detection of 12 respiratory viral infections in four triplex reactions. J. Clin. Virol. 33:341-344.
14. Hoortar, J., B. Malorny, A. Abdulmawjood, N. Cook, M. Wagner, and P. Fach. 2004. Practical considerations in design of internal amplification controls for diagnostic PCR assays. J. Clin. Microbiol. 42:1863-1868.
15. Hoover, D. M., and J. Lubkowski. 2002. DNA Works: an automated method for designing oligonucleotides for PCR-based gene synthesis. Nucleic Acids Res. 30:e43.
16. Langerak, P., A. O. Nygren, J. P. Schouten, and H. Jacobs. 2005. Rapid and quantitative detection of homologous and non-homologous recombination events using three oligonucleotide MLPA. Nucleic Acids Res. 33:e188.
17. Li, H., M. A. McCormac, R. W. Estes, S. E. Sefers, R. K. Dare, J. D. Chappell, D. D. Erdman, P. F. Wright, and Y. W. Tang. 2007. Simultaneous detection and high-throughput identification of a panel of RNA viruses causing respiratory tract infections. J. Clin. Microbiol. 45:2105-2109.
18. Lopez, A. D., C. D. Mathers, M. Ezzati, D. T. Jamison, and C. J. Murray. 2006. Global and regional burden of disease and risk factors, 2001: systematic analysis of population health data. Lancet 367:1747-1757.
19. Luna, L. K., M. Panning, K. Grywna, S. Pfefferte, and C. Drosten. 2007. Spectrum of viruses and atypical bacteria in intercontinental air travelers with symptoms of acute respiratory infection. J. Infect. Dis. 195:675-679.
20. Maertzdorf, J., C. K. Wang, J. B. Brown, J. D. Quinto, M. Chu, M. de Graaf, B. G. van den Hoogen, R. Spaete, A. D. Osterhaus, and R. A. Fouchier. 2004. Real-time reverse transcriptase PCR assay for detection of human metapneumoviruses from all known genetic lineages. J. Clin. Microbiol. 42:981-986.
21. Molenkamp, R., A. van der Ham, J. Schinkel, and M. Beld. 2007. Simultaneous detection of five different DNA targets by real-time TaqMan PCR using the Roche LightCycler480: application in viral molecular diagnostics. J. Virol. Methods 141:205-211.
22. Nygren, A. O., N. Ameziane, H. M. Duarte, R. N. Vijzelaar, Q. Waisfisz, C. J. Hess, J. P. Schouten, and A. Errami. 2005. Methylation-specific MLPA (MS-MLPA): simultaneous detection of CpG methylation and copy number changes of up to 40 sequences. Nucleic Acids Res. 33:e128.
23. Oosterheert, J. J., A. M. van Loon, R. Schuurman, A. I. Hoepelman, E. Hak, S. Thijsen, G. Nossent, M. M. Schneider, W. M. Hustinx, and M. J. Bonten. 2005. Impact of rapid detection of viral and atypical bacterial pathogens by real-time polymerase chain reaction for patients with lower respiratory tract infection. Clin. Infect. Dis. 41:1438-1444.
24. Osiowy, C. 1998. Direct detection of respiratory syncytial virus, parainfluenza virus, and adenovirus in clinical respiratory specimens by a multiplex reverse transcription-PCR assay. J. Clin. Microbiol. 36:3149-3154.
25. Pehler-Harrington, K., M. Khanna, C. R. Waters, and K. J. Henrickson. 2004. Rapid detection and identification of human adenovirus species by Adenoplex, a multiplex PCR-enzyme hybridization assay. J. Clin. Microbiol. 42:4072-4076.
26. Puppe, W., J. A. Weigl, G. Aron, B. Grondahl, H. J. Schmitt, H. G. Niesters, and J. Groen. 2004. Evaluation of a multiplex reverse transcriptase PCR ELISA for the detection of nine respiratory tract pathogens. J. Clin. Virol. 30:165-174.
27. Schouten, J. P., C. J. McElgunn, R. Waaijer, D. Zwijnenburg, F. Diepvens, and G. Pals. 2002. Relative quantification of 40 nucleic acid sequences by multiplex ligation-dependent probe amplification. Nucleic Acids Res. 30:e57.
28. Speers, D. J. 2006. Clinical applications of molecular biology for infectious diseases. Clin. Biochem. Rev. 27:39-51.
29. Storch, G. A. 2003. Rapid diagnostic tests for influenza. Curr. Opin. Pediatr. 15:77-84.
30. Templeton, K. E., S. A. Scheltinga, M. F. Beersma, A. C. Kroes, and E. C. Claas. 2004. Rapid and sensitive method using multiplex real-time PCR for diagnosis of infections by influenza A and influenza B viruses, respiratory syncytial virus, and parainfluenza viruses 1, 2, 3, and 4. J. Clin. Microbiol. 42:1564-1569.
31. van den Hoogen, B. G., J. C. de Jong, J. Groen, T. Kuiken, R. de Groot, R. A. Fouchier, and A. D. Osterhaus. 2001. A newly discovered human pneumovirus isolated from young children with respiratory tract disease. Nat. Med. 7:719-724.
32. van der Hoek, L., K. Pyre, M. F. Jebbink, W. Vermeulen-Oost, R. J. Berkhout, K. C. Wolthers, P. M. Wertheim-van Dillen, J. Kaandorp, J. Spaargaren, and B. Berkhout. 2004. Identification of a new human coronavirus. Nat. Med. 10:368-373.
33. Viazov, S., F. Ratjen, R. Scheidhauer, M. Fiedler, and M. Roggendorf. 2003. High prevalence of human metapneumovirus infection in young children and genetic heterogeneity of the viral isolates. J. Clin. Microbiol. 41:3043-3045.
34. Vicente, D., G. Cilla, M. Montes, and E. Perez-Trallero. 2003. Human metapneumovirus and community-acquired respiratory illness in children. Emerg. Infect. Dis. 9:602-603.
35. Vijgen, L., E. Keyaerts, E. Moes, P. Maes, G. Duson, and M. Van Ranst. 2005. Development of one-step, real-time, quantitative reverse transcriptase PCR assays for absolute quantitation of human coronaviruses OC43 and 229E. J. Clin. Microbiol. 43:5452-5456.
36. Woo, P. C., S. K. Lau, C. M. Chu, K. H. Chan, H. W. Tsoi, Y. Huang, B. H. Wong, R. W. Poon, J. J. Cai, W. K. Luk, L. L. Poon, S. S. Wong, Y. Guan, J. S. Peiris, and K. Y. Yuen. 2005. Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia. J. Virol. 79:884-895.