메뉴 건너뛰기




Volumn 36, Issue 12, 2008, Pages

Improved assay-dependent searching of nucleic acid sequence databases

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

EID: 47249104768     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn301     Document Type: Article
Times cited : (36)

References (21)
  • 2
    • 1542714585 scopus 로고    scopus 로고
    • me-PCR: A refined ultrafast algorithm for identifying sequence-defined genomic elements
    • Murphy,K., Raj,T., Winters,R. and White,P. (2004) me-PCR: A refined ultrafast algorithm for identifying sequence-defined genomic elements. Bioinformatics, 20, 588-590.
    • (2004) Bioinformatics , vol.20 , pp. 588-590
    • Murphy, K.1    Raj, T.2    Winters, R.3    White, P.4
  • 3
    • 0348143181 scopus 로고    scopus 로고
    • PRIMEX: Rapid identification of oligonucleotide matches in whole genomes
    • Lexa,M. and Valle,G. (2003) PRIMEX: Rapid identification of oligonucleotide matches in whole genomes. Bioinformatics, 19 2486-2488.
    • (2003) Bioinformatics , vol.19 , pp. 2486-2488
    • Lexa, M.1    Valle, G.2
  • 4
    • 0029819518 scopus 로고    scopus 로고
    • A mathematical model and a computerized simulation of PCR using complex templates
    • Rubin,E. and Levy,A. (1996) A mathematical model and a computerized simulation of PCR using complex templates. Nucleic Acids Res., 24, 3538-3545.
    • (1996) Nucleic Acids Res , vol.24 , pp. 3538-3545
    • Rubin, E.1    Levy, A.2
  • 5
    • 19744383664 scopus 로고    scopus 로고
    • BiSearch: Primer-design and search tool for PCR on bisulfite-treated genomes
    • Tusnady,G., Simon,I., Varadi,A. and Aranyi,T. (2005) BiSearch: primer-design and search tool for PCR on bisulfite-treated genomes. Nucleic Acids Res., 33, e9.
    • (2005) Nucleic Acids Res , vol.33
    • Tusnady, G.1    Simon, I.2    Varadi, A.3    Aranyi, T.4
  • 6
    • 25444508405 scopus 로고    scopus 로고
    • Information theory-based algorithm for in silico prediction of PCR products with whole genomic; sequences as templates
    • Cao,Y., Wang,L., Xu,K., Kou,C., Zhang,Y., Wei,G., He,J., Wang,Y. and Zhao,L. (2005) Information theory-based algorithm for in silico prediction of PCR products with whole genomic; sequences as templates. BMC Bioinform., 6, 190.
    • (2005) BMC Bioinform , vol.6 , pp. 190
    • Cao, Y.1    Wang, L.2    Xu, K.3    Kou, C.4    Zhang, Y.5    Wei, G.6    He, J.7    Wang, Y.8    Zhao, L.9
  • 7
    • 47249145634 scopus 로고    scopus 로고
    • Available online at
    • Slater,G. (2007), iPCRess. Available online at http://www.ebi.ac.uk/ ~guy/exonerate/.
    • (2007) iPCRess
    • Slater, G.1
  • 8
    • 7244260513 scopus 로고    scopus 로고
    • PUNS: Transcriptomic- and genomic-in silico PCR for enhanced primer design
    • Boutros,P. and Okey,A. (2004) PUNS: Transcriptomic- and genomic-in silico PCR for enhanced primer design. Bioinformatics, 20, 2399-2400.
    • (2004) Bioinformatics , vol.20 , pp. 2399-2400
    • Boutros, P.1    Okey, A.2
  • 9
    • 1842455190 scopus 로고    scopus 로고
    • In silico analysis of complete bacterial genomes: PCR, AFLP-PCR and endonuclease restriction
    • Bikandi,J., Millan,R., Rementeria,A. and Garaizar,J. (2004) In silico analysis of complete bacterial genomes: PCR, AFLP-PCR and endonuclease restriction. Bioinformatics, 20, 798-799.
    • (2004) Bioinformatics , vol.20 , pp. 798-799
    • Bikandi, J.1    Millan, R.2    Rementeria, A.3    Garaizar, J.4
  • 10
    • 0027491210 scopus 로고
    • Contributing software to the internet: The amplify program
    • Engels,W. (1993) Contributing software to the internet: The amplify program. Trends Biochem. Sci., 18, 448-450.
    • (1993) Trends Biochem. Sci , vol.18 , pp. 448-450
    • Engels, W.1
  • 11
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
    • SantaLucia,J. (1998) A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl Acad. Sci. USA, 95, 1460-1465.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 1460-1465
    • SantaLucia, J.1
  • 12
    • 0002263171 scopus 로고
    • Theory of the melting transition of synthetic polynucleotides: Evaluation of the stacking free energy
    • Crothers,D. and Zimm,B. (1964) Theory of the melting transition of synthetic polynucleotides: Evaluation of the stacking free energy. J. Mol. Biol., 9, 1-9.
    • (1964) J. Mol. Biol , vol.9 , pp. 1-9
    • Crothers, D.1    Zimm, B.2
  • 14
    • 23144440350 scopus 로고    scopus 로고
    • DINAMelt web server for nucleic acid melting prediction
    • Markham,N. and Zuker,M. (2005) DINAMelt web server for nucleic acid melting prediction. Nucleic Acids Res., 33, W577-W581.
    • (2005) Nucleic Acids Res , vol.33
    • Markham, N.1    Zuker, M.2
  • 15
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker,M. (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res., 31, 3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 16
    • 0036772248 scopus 로고    scopus 로고
    • Selecting signature oligonucleotides to identify organisms using DNA arrays
    • Kaderali,L. and Schliep,A. (2002) Selecting signature oligonucleotides to identify organisms using DNA arrays. Bioinformatics, 18, 1340-1349.
    • (2002) Bioinformatics , vol.18 , pp. 1340-1349
    • Kaderali, L.1    Schliep, A.2
  • 17
    • 19544388991 scopus 로고    scopus 로고
    • A fractional programming approach to efficient DNA melting temperature calculation
    • Leber,M., Kaderali,L., Schonhuth,A. and Schrader,R. (2005) A fractional programming approach to efficient DNA melting temperature calculation. Bioinformatics, 21, 2375-2382.
    • (2005) Bioinformatics , vol.21 , pp. 2375-2382
    • Leber, M.1    Kaderali, L.2    Schonhuth, A.3    Schrader, R.4
  • 19
    • 0034194135 scopus 로고    scopus 로고
    • Thermodynamic parameters of DNA sequences with dangling ends
    • Bommarito,S., Peyret,N. and SantaLucia,J. (2000) Thermodynamic parameters of DNA sequences with dangling ends. Nucleic Acids Res. 28, 1929-1934.
    • (2000) Nucleic Acids Res , vol.28 , pp. 1929-1934
    • Bommarito, S.1    Peyret, N.2    SantaLucia, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.