-
1
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
10.1038/nature04532, 16429126
-
Gavin AC, Aloy P, Grandi P, Krause R, Boesche M, Marzioch M, Rau C, Jensen LJ, Bastuck S, Dumpelfeld B, et al. Proteome survey reveals modularity of the yeast cell machinery. Nature 2006, 440(7084):631-636. 10.1038/nature04532, 16429126.
-
(2006)
Nature
, vol.440
, Issue.7084
, pp. 631-636
-
-
Gavin, A.C.1
Aloy, P.2
Grandi, P.3
Krause, R.4
Boesche, M.5
Marzioch, M.6
Rau, C.7
Jensen, L.J.8
Bastuck, S.9
Dumpelfeld, B.10
-
2
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
10.1038/nature04670, 16554755
-
Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, et al. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 2006, 440(7084):637-643. 10.1038/nature04670, 16554755.
-
(2006)
Nature
, vol.440
, Issue.7084
, pp. 637-643
-
-
Krogan, N.J.1
Cagney, G.2
Yu, H.3
Zhong, G.4
Guo, X.5
Ignatchenko, A.6
Li, J.7
Pu, S.8
Datta, N.9
Tikuisis, A.P.10
-
3
-
-
36748999400
-
New modes of translational control in development, behavior, and disease
-
10.1016/j.molcel.2007.11.018, 18082597
-
Sonenberg N, Hinnebusch AG. New modes of translational control in development, behavior, and disease. Mol Cell 2007, 28(5):721-729. 10.1016/j.molcel.2007.11.018, 18082597.
-
(2007)
Mol Cell
, vol.28
, Issue.5
, pp. 721-729
-
-
Sonenberg, N.1
Hinnebusch, A.G.2
-
4
-
-
32044465506
-
TOR signaling in growth and metabolism
-
10.1016/j.cell.2006.01.016, 16469695
-
Wullschleger S, Loewith R, Hall MN. TOR signaling in growth and metabolism. Cell 2006, 124(3):471-484. 10.1016/j.cell.2006.01.016, 16469695.
-
(2006)
Cell
, vol.124
, Issue.3
, pp. 471-484
-
-
Wullschleger, S.1
Loewith, R.2
Hall, M.N.3
-
5
-
-
0036463736
-
Autophagy in the eukaryotic cell
-
10.1128/EC.01.1.11-21.2002, 118053, 12455967
-
Reggiori F, Klionsky DJ. Autophagy in the eukaryotic cell. Eukaryot Cell 2002, 1(1):11-21. 10.1128/EC.01.1.11-21.2002, 118053, 12455967.
-
(2002)
Eukaryot Cell
, vol.1
, Issue.1
, pp. 11-21
-
-
Reggiori, F.1
Klionsky, D.J.2
-
6
-
-
0842288337
-
Inferring cellular networks using probabilistic graphical models
-
10.1126/science.1094068, 14764868
-
Friedman N. Inferring cellular networks using probabilistic graphical models. Science 2004, 303(5659):799-805. 10.1126/science.1094068, 14764868.
-
(2004)
Science
, vol.303
, Issue.5659
, pp. 799-805
-
-
Friedman, N.1
-
7
-
-
11144319853
-
Use of logic relationships to decipher protein network organization
-
10.1126/science.1103330, 15618515
-
Bowers PM, Cokus SJ, Eisenberg D, Yeates TO. Use of logic relationships to decipher protein network organization. Science 2004, 306(5705):2246-2249. 10.1126/science.1103330, 15618515.
-
(2004)
Science
, vol.306
, Issue.5705
, pp. 2246-2249
-
-
Bowers, P.M.1
Cokus, S.J.2
Eisenberg, D.3
Yeates, T.O.4
-
8
-
-
0033551248
-
Assigning protein functions by comparative genome analysis: protein phylogenetic profiles
-
10.1073/pnas.96.8.4285, 16324, 10200254
-
Pellegrini M, Marcotte EM, Thompson MJ, Eisenberg D, Yeates TO. Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proc Natl Acad Sci USA 1999, 96(8):4285-4288. 10.1073/pnas.96.8.4285, 16324, 10200254.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, Issue.8
, pp. 4285-4288
-
-
Pellegrini, M.1
Marcotte, E.M.2
Thompson, M.J.3
Eisenberg, D.4
Yeates, T.O.5
-
9
-
-
27144556456
-
Utilizing logical relationships in genomic data to decipher cellular processes
-
10.1111/j.1742-4658.2005.04946.x, 16218945
-
Bowers PM, O'Connor BD, Cokus SJ, Sprinzak E, Yeates TO, Eisenberg D. Utilizing logical relationships in genomic data to decipher cellular processes. Febs J 2005, 272(20):5110-5118. 10.1111/j.1742-4658.2005.04946.x, 16218945.
-
(2005)
Febs J
, vol.272
, Issue.20
, pp. 5110-5118
-
-
Bowers, P.M.1
O'Connor, B.D.2
Cokus, S.J.3
Sprinzak, E.4
Yeates, T.O.5
Eisenberg, D.6
-
10
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
15070, 11102521
-
Gasch AP, Spellman PT, Kao CM, Carmel-Harel O, Eisen MB, Storz G, Botstein D, Brown PO. Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell 2000, 11(12):4241-4257. 15070, 11102521.
-
(2000)
Mol Biol Cell
, vol.11
, Issue.12
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
Storz, G.6
Botstein, D.7
Brown, P.O.8
-
11
-
-
23844534426
-
Importance of cell wall mannoproteins for septum formation in Saccharomyces cerevisiae
-
10.1002/yea.1242, 16034811
-
Schmidt M, Strenk ME, Boyer MP, Fritsch BJ. Importance of cell wall mannoproteins for septum formation in Saccharomyces cerevisiae. Yeast 2005, 22(9):715-723. 10.1002/yea.1242, 16034811.
-
(2005)
Yeast
, vol.22
, Issue.9
, pp. 715-723
-
-
Schmidt, M.1
Strenk, M.E.2
Boyer, M.P.3
Fritsch, B.J.4
-
12
-
-
0037160121
-
The components of the Saccharomyces cerevisiae mannosyltransferase complex M-Pol I have distinct functions in mannan synthesis
-
10.1074/jbc.M208023200, 12235155
-
Stolz J, Munro S. The components of the Saccharomyces cerevisiae mannosyltransferase complex M-Pol I have distinct functions in mannan synthesis. J Biol Chem 2002, 277(47):44801-44808. 10.1074/jbc.M208023200, 12235155.
-
(2002)
J Biol Chem
, vol.277
, Issue.47
, pp. 44801-44808
-
-
Stolz, J.1
Munro, S.2
-
13
-
-
0033525512
-
The Saccharomyces cerevisiae protein Mnn10p/Bed1p is a subunit of a Golgi mannosyltransferase complex
-
10.1074/jbc.274.10.6579, 10037752
-
Jungmann J, Rayner JC, Munro S. The Saccharomyces cerevisiae protein Mnn10p/Bed1p is a subunit of a Golgi mannosyltransferase complex. J Biol Chem 1999, 274(10):6579-6585. 10.1074/jbc.274.10.6579, 10037752.
-
(1999)
J Biol Chem
, vol.274
, Issue.10
, pp. 6579-6585
-
-
Jungmann, J.1
Rayner, J.C.2
Munro, S.3
-
14
-
-
3943059566
-
Roles of N-linked glycans in the endoplasmic reticulum
-
10.1146/annurev.biochem.73.011303.073752, 15189166
-
Helenius A, Aebi M. Roles of N-linked glycans in the endoplasmic reticulum. Annu Rev Biochem 2004, 73:1019-1049. 10.1146/annurev.biochem.73.011303.073752, 15189166.
-
(2004)
Annu Rev Biochem
, vol.73
, pp. 1019-1049
-
-
Helenius, A.1
Aebi, M.2
-
15
-
-
19344370199
-
Crosstalk in gene expression: coupling and co-regulation of rDNA transcription, pre-ribosome assembly and pre-rRNA processing
-
10.1016/j.ceb.2005.04.001, 15901498
-
Granneman S, Baserga SJ. Crosstalk in gene expression: coupling and co-regulation of rDNA transcription, pre-ribosome assembly and pre-rRNA processing. Curr Opin Cell Biol 2005, 17(3):281-286. 10.1016/j.ceb.2005.04.001, 15901498.
-
(2005)
Curr Opin Cell Biol
, vol.17
, Issue.3
, pp. 281-286
-
-
Granneman, S.1
Baserga, S.J.2
-
16
-
-
33745478477
-
Potential roles for ubiquitin and the proteasome during ribosome biogenesis
-
10.1128/MCB.02227-05, 1489179, 16782897
-
Stavreva DA, Kawasaki M, Dundr M, Koberna K, Muller WG, Tsujimura-Takahashi T, Komatsu W, Hayano T, Isobe T, Raska I, et al. Potential roles for ubiquitin and the proteasome during ribosome biogenesis. Mol Cell Biol 2006, 26(13):5131-5145. 10.1128/MCB.02227-05, 1489179, 16782897.
-
(2006)
Mol Cell Biol
, vol.26
, Issue.13
, pp. 5131-5145
-
-
Stavreva, D.A.1
Kawasaki, M.2
Dundr, M.3
Koberna, K.4
Muller, W.G.5
Tsujimura-Takahashi, T.6
Komatsu, W.7
Hayano, T.8
Isobe, T.9
Raska, I.10
-
17
-
-
0036787003
-
Components of an interdependent unit within the SSU processome regulate and mediate its activity
-
10.1128/MCB.22.20.7258-7267.2002, 139808, 12242301
-
Wehner KA, Gallagher JE, Baserga SJ. Components of an interdependent unit within the SSU processome regulate and mediate its activity. Mol Cell Biol 2002, 22(20):7258-7267. 10.1128/MCB.22.20.7258-7267.2002, 139808, 12242301.
-
(2002)
Mol Cell Biol
, vol.22
, Issue.20
, pp. 7258-7267
-
-
Wehner, K.A.1
Gallagher, J.E.2
Baserga, S.J.3
-
18
-
-
33749379882
-
Global translational responses to oxidative stress impact upon multiple levels of protein synthesis
-
10.1074/jbc.M601545200, 16849329
-
Shenton D, Smirnova JB, Selley JN, Carroll K, Hubbard SJ, Pavitt GD, Ashe MP, Grant CM. Global translational responses to oxidative stress impact upon multiple levels of protein synthesis. J Biol Chem 2006, 281(39):29011-29021. 10.1074/jbc.M601545200, 16849329.
-
(2006)
J Biol Chem
, vol.281
, Issue.39
, pp. 29011-29021
-
-
Shenton, D.1
Smirnova, J.B.2
Selley, J.N.3
Carroll, K.4
Hubbard, S.J.5
Pavitt, G.D.6
Ashe, M.P.7
Grant, C.M.8
-
19
-
-
33644878150
-
MPact: the MIPS protein interaction resource on yeast
-
10.1093/nar/gkj003, 1347366, 16381906, Database
-
Guldener U, Munsterkotter M, Oesterheld M, Pagel P, Ruepp A, Mewes HW, Stumpflen V. MPact: the MIPS protein interaction resource on yeast. Nucleic Acids Res 2006, (34 Database):D436-441. 10.1093/nar/gkj003, 1347366, 16381906.
-
(2006)
Nucleic Acids Res
, Issue.34
-
-
Guldener, U.1
Munsterkotter, M.2
Oesterheld, M.3
Pagel, P.4
Ruepp, A.5
Mewes, H.W.6
Stumpflen, V.7
-
20
-
-
0036699526
-
Revealing modular organization in the yeast transcriptional network
-
Ihmels J, Friedlander G, Bergmann S, Sarig O, Ziv Y, Barkai N. Revealing modular organization in the yeast transcriptional network. Nat Genet 2002, 31(4):370-377.
-
(2002)
Nat Genet
, vol.31
, Issue.4
, pp. 370-377
-
-
Ihmels, J.1
Friedlander, G.2
Bergmann, S.3
Sarig, O.4
Ziv, Y.5
Barkai, N.6
-
21
-
-
0037941585
-
Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data
-
10.1038/ng1165, 12740579
-
Segal E, Shapira M, Regev A, Pe'er D, Botstein D, Koller D, Friedman N. Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data. Nat Genet 2003, 34(2):166-176. 10.1038/ng1165, 12740579.
-
(2003)
Nat Genet
, vol.34
, Issue.2
, pp. 166-176
-
-
Segal, E.1
Shapira, M.2
Regev, A.3
Pe'er, D.4
Botstein, D.5
Koller, D.6
Friedman, N.7
-
22
-
-
65249176527
-
Stress-Dependent Coordination of Transcriptome and Translatome in Yeast
-
10.1371/journal.pbio.1000105, 2675909, 19419242
-
Halbeisen RE, Gerber A, eacute P. Stress-Dependent Coordination of Transcriptome and Translatome in Yeast. PLoS Biology 2009, 7(5):e105. 10.1371/journal.pbio.1000105, 2675909, 19419242.
-
(2009)
PLoS Biology
, vol.7
, Issue.5
-
-
Halbeisen, R.E.1
Gerber, A.2
eacute, P.3
-
23
-
-
39749140606
-
Strategy of transcription regulation in the budding yeast
-
10.1371/journal.pone.0000250, 1803021, 17327914
-
Levy S, Ihmels J, Carmi M, Weinberger A, Friedlander G, Barkai N. Strategy of transcription regulation in the budding yeast. PLoS ONE 2007, 2(2):e250. 10.1371/journal.pone.0000250, 1803021, 17327914.
-
(2007)
PLoS ONE
, vol.2
, Issue.2
-
-
Levy, S.1
Ihmels, J.2
Carmi, M.3
Weinberger, A.4
Friedlander, G.5
Barkai, N.6
-
24
-
-
0024546509
-
The scanning model for translation: an update
-
10.1083/jcb.108.2.229, 2115416, 2645293
-
Kozak M. The scanning model for translation: an update. J Cell Biol 1989, 108(2):229-241. 10.1083/jcb.108.2.229, 2115416, 2645293.
-
(1989)
J Cell Biol
, vol.108
, Issue.2
, pp. 229-241
-
-
Kozak, M.1
-
25
-
-
13244284551
-
Dynamic complex formation during the yeast cell cycle
-
10.1126/science.1105103, 15692050
-
de Lichtenberg U, Jensen LJ, Brunak S, Bork P. Dynamic complex formation during the yeast cell cycle. Science 2005, 307(5710):724-727. 10.1126/science.1105103, 15692050.
-
(2005)
Science
, vol.307
, Issue.5710
, pp. 724-727
-
-
de Lichtenberg, U.1
Jensen, L.J.2
Brunak, S.3
Bork, P.4
-
26
-
-
33749148764
-
Modularity of the transcriptional response of protein complexes in yeast
-
10.1016/j.jmb.2006.06.024, 16973176
-
Simonis N, Gonze D, Orsi C, van Helden J, Wodak SJ. Modularity of the transcriptional response of protein complexes in yeast. J Mol Biol 2006, 363(2):589-610. 10.1016/j.jmb.2006.06.024, 16973176.
-
(2006)
J Mol Biol
, vol.363
, Issue.2
, pp. 589-610
-
-
Simonis, N.1
Gonze, D.2
Orsi, C.3
van Helden, J.4
Wodak, S.J.5
-
27
-
-
0036772367
-
Conservation of gene co-regulation in prokaryotes and eukaryotes
-
discussion 410., 10.1016/S0167-7799(02)02032-2, 12220896
-
Teichmann SA, Babu MM. Conservation of gene co-regulation in prokaryotes and eukaryotes. Trends Biotechnol 2002, 20(10):407-410. discussion 410., 10.1016/S0167-7799(02)02032-2, 12220896.
-
(2002)
Trends Biotechnol
, vol.20
, Issue.10
, pp. 407-410
-
-
Teichmann, S.A.1
Babu, M.M.2
-
28
-
-
24344498648
-
A network of transcriptionally coordinated functional modules in Saccharomyces cerevisiae
-
10.1101/gr.3847105, 1199545, 16109970
-
Petti AA, Church GM. A network of transcriptionally coordinated functional modules in Saccharomyces cerevisiae. Genome Res 2005, 15(9):1298-1306. 10.1101/gr.3847105, 1199545, 16109970.
-
(2005)
Genome Res
, vol.15
, Issue.9
, pp. 1298-1306
-
-
Petti, A.A.1
Church, G.M.2
-
29
-
-
11244297914
-
Modular epistasis in yeast metabolism
-
Segre D, Deluna A, Church GM, Kishony R. Modular epistasis in yeast metabolism. Nat Genet 2005, 37(1):77-83.
-
(2005)
Nat Genet
, vol.37
, Issue.1
, pp. 77-83
-
-
Segre, D.1
Deluna, A.2
Church, G.M.3
Kishony, R.4
-
30
-
-
1542357674
-
Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data
-
10.1073/pnas.0308661100, 365731, 14973197
-
Tanay A, Sharan R, Kupiec M, Shamir R. Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data. Proc Natl Acad Sci USA 2004, 101(9):2981-2986. 10.1073/pnas.0308661100, 365731, 14973197.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, Issue.9
, pp. 2981-2986
-
-
Tanay, A.1
Sharan, R.2
Kupiec, M.3
Shamir, R.4
-
31
-
-
39049127598
-
Revealing targeted therapy for human cancer by gene module maps
-
10.1158/0008-5472.CAN-07-0382, 18199530
-
Wong DJ, Nuyten DS, Regev A, Lin M, Adler AS, Segal E, Vijver MJ, Chang HY. Revealing targeted therapy for human cancer by gene module maps. Cancer Res 2008, 68(2):369-378. 10.1158/0008-5472.CAN-07-0382, 18199530.
-
(2008)
Cancer Res
, vol.68
, Issue.2
, pp. 369-378
-
-
Wong, D.J.1
Nuyten, D.S.2
Regev, A.3
Lin, M.4
Adler, A.S.5
Segal, E.6
Vijver, M.J.7
Chang, H.Y.8
-
32
-
-
33846047770
-
IntAct--open source resource for molecular interaction data
-
10.1093/nar/gkl958, 1751531, 17145710, Database
-
Kerrien S, Alam-Faruque Y, Aranda B, Bancarz I, Bridge A, Derow C, Dimmer E, Feuermann M, Friedrichsen A, Huntley R, et al. IntAct--open source resource for molecular interaction data. Nucleic Acids Res 2007, (35 Database):D561-565. 10.1093/nar/gkl958, 1751531, 17145710.
-
(2007)
Nucleic Acids Res
, Issue.35
-
-
Kerrien, S.1
Alam-Faruque, Y.2
Aranda, B.3
Bancarz, I.4
Bridge, A.5
Derow, C.6
Dimmer, E.7
Feuermann, M.8
Friedrichsen, A.9
Huntley, R.10
-
33
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
10.1038/nature02800, 15343339
-
Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, Danford TW, Hannett NM, Tagne JB, Reynolds DB, Yoo J, et al. Transcriptional regulatory code of a eukaryotic genome. Nature 2004, 431(7004):99-104. 10.1038/nature02800, 15343339.
-
(2004)
Nature
, vol.431
, Issue.7004
, pp. 99-104
-
-
Harbison, C.T.1
Gordon, D.B.2
Lee, T.I.3
Rinaldi, N.J.4
Macisaac, K.D.5
Danford, T.W.6
Hannett, N.M.7
Tagne, J.B.8
Reynolds, D.B.9
Yoo, J.10
-
34
-
-
33645769260
-
An improved map of conserved regulatory sites for Saccharomyces cerevisiae
-
10.1186/1471-2105-7-113, 1435934, 16522208
-
MacIsaac KD, Wang T, Gordon DB, Gifford DK, Stormo GD, Fraenkel E. An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC Bioinformatics 2006, 7:113. 10.1186/1471-2105-7-113, 1435934, 16522208.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 113
-
-
MacIsaac, K.D.1
Wang, T.2
Gordon, D.B.3
Gifford, D.K.4
Stormo, G.D.5
Fraenkel, E.6
-
35
-
-
2142754126
-
Ribosome biogenesis: of knobs and RNA processing
-
10.1016/j.yexcr.2004.03.016, 15120992
-
Granneman S, Baserga SJ. Ribosome biogenesis: of knobs and RNA processing. Exp Cell Res 2004, 296(1):43-50. 10.1016/j.yexcr.2004.03.016, 15120992.
-
(2004)
Exp Cell Res
, vol.296
, Issue.1
, pp. 43-50
-
-
Granneman, S.1
Baserga, S.J.2
-
36
-
-
28844478867
-
EIF2B, a mediator of general and gene-specific translational control
-
Pavitt GD. eIF2B, a mediator of general and gene-specific translational control. Biochem Soc Trans 2005, 33(Pt 6):1487-1492.
-
(2005)
Biochem Soc Trans
, vol.33
, Issue.PART. 6
, pp. 1487-1492
-
-
Pavitt, G.D.1
-
37
-
-
0038309329
-
The molecular mechanism of autophagy
-
1430730, 12865942
-
Wang CW, Klionsky DJ. The molecular mechanism of autophagy. Mol Med 2003, 9(3-4):65-76. 1430730, 12865942.
-
(2003)
Mol Med
, vol.9
, Issue.3-4
, pp. 65-76
-
-
Wang, C.W.1
Klionsky, D.J.2
|