-
1
-
-
38049095768
-
Stochastic patterning in the mouse preimplantation embryo
-
Dietrich JE, Hiiragi T (2007) Stochastic patterning in the mouse preimplantation embryo. Development 134: 4219-4231.
-
(2007)
Development
, vol.134
, pp. 4219-4231
-
-
Dietrich, J.E.1
Hiiragi, T.2
-
3
-
-
33746773659
-
-
Nature
-
Ivanova N, Dobrin R, Lu R, Kotenko I, Levorse J, et al. (2006) Dissecting self-renewal in stem cells with RNA interference. Nature.
-
(2006)
Dissecting self-renewal in stem cells with RNA interference
-
-
Ivanova, N.1
Dobrin, R.2
Lu, R.3
Kotenko, I.4
Levorse, J.5
-
4
-
-
40249093059
-
A core Klf circuitry regulates self-renewal of embryonic stem cells
-
Jiang J, Chan YS, Loh YH, Cai J, Tong GQ, et al. (2008) A core Klf circuitry regulates self-renewal of embryonic stem cells. Nat Cell Biol 10: 353-360.
-
(2008)
Nat Cell Biol
, vol.10
, pp. 353-360
-
-
Jiang, J.1
Chan, Y.S.2
Loh, Y.H.3
Cai, J.4
Tong, G.Q.5
-
5
-
-
0032582513
-
Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4
-
Nichols J, Zevnik B, Anastassiadis K, Niwa H, Klewe-Nebenius D, et al. (1998) Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4. Cell 95: 379-391.
-
(1998)
Cell
, vol.95
, pp. 379-391
-
-
Nichols, J.1
Zevnik, B.2
Anastassiadis, K.3
Niwa, H.4
Klewe-Nebenius, D.5
-
6
-
-
0034028901
-
Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells
-
Niwa H, Miyazaki J, Smith AG (2000) Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells. Nat Genet 24: 372-376.
-
(2000)
Nat Genet
, vol.24
, pp. 372-376
-
-
Niwa, H.1
Miyazaki, J.2
Smith, A.G.3
-
7
-
-
0042343822
-
Functions of fibroblast growth factor (FGF)-2 and FGF-5 in astroglial differentiation and blood-brain barrier permeability: Evidence from mouse mutants
-
Reuss B, Dono R, Unsicker K (2003) Functions of fibroblast growth factor (FGF)-2 and FGF-5 in astroglial differentiation and blood-brain barrier permeability: evidence from mouse mutants. J Neurosci 23: 6404-6412.
-
(2003)
J Neurosci
, vol.23
, pp. 6404-6412
-
-
Reuss, B.1
Dono, R.2
Unsicker, K.3
-
8
-
-
33646882068
-
Polycomb complexes repress developmental regulators in murine embryonic stem cells
-
Boyer LA, Plath K, Zeitlinger J, Brambrink T, Medeiros LA, et al. (2006) Polycomb complexes repress developmental regulators in murine embryonic stem cells. Nature 441: 349-353.
-
(2006)
Nature
, vol.441
, pp. 349-353
-
-
Boyer, L.A.1
Plath, K.2
Zeitlinger, J.3
Brambrink, T.4
Medeiros, L.A.5
-
9
-
-
33645381936
-
The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells
-
Loh YH, Wu Q, Chew JL, Vega VB, Zhang W, et al. (2006) The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells. Nat Genet 38: 431-440.
-
(2006)
Nat Genet
, vol.38
, pp. 431-440
-
-
Loh, Y.H.1
Wu, Q.2
Chew, J.L.3
Vega, V.B.4
Zhang, W.5
-
10
-
-
44649117905
-
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
-
Chen X, Xu H, Yuan P, Fang F, Huss M, et al. (2008) Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell 133: 1106-1117.
-
(2008)
Cell
, vol.133
, pp. 1106-1117
-
-
Chen, X.1
Xu, H.2
Yuan, P.3
Fang, F.4
Huss, M.5
-
11
-
-
0038444122
-
Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells
-
Elkon R, Linhart C, Sharan R, Shamir R, Shiloh Y (2003) Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells. Genome Res 13: 773-780.
-
(2003)
Genome Res
, vol.13
, pp. 773-780
-
-
Elkon, R.1
Linhart, C.2
Sharan, R.3
Shamir, R.4
Shiloh, Y.5
-
12
-
-
33646726733
-
Notch promotes neural lineage entry by pluripotent embryonic stem cells
-
Lowell S, Benchoua A, Heavey B, Smith AG (2006) Notch promotes neural lineage entry by pluripotent embryonic stem cells. PLoS Biol 4: e121.
-
(2006)
PLoS Biol
, vol.4
-
-
Lowell, S.1
Benchoua, A.2
Heavey, B.3
Smith, A.G.4
-
13
-
-
42649104782
-
Notch signaling activation in human embryonic stem cells is required for embryonic, but not trophoblastic, lineage commitment
-
Yu X, Zou J, Ye Z, Hammond H, Chen G, et al. (2008) Notch signaling activation in human embryonic stem cells is required for embryonic, but not trophoblastic, lineage commitment. Cell Stem Cell 2: 461-471.
-
(2008)
Cell Stem Cell
, vol.2
, pp. 461-471
-
-
Yu, X.1
Zou, J.2
Ye, Z.3
Hammond, H.4
Chen, G.5
-
14
-
-
33749350211
-
Transcriptional dynamics of the embryonic stem cell switch
-
Chickarmane V, Troein C, Nuber UA, Sauro HM, Peterson C (2006) Transcriptional dynamics of the embryonic stem cell switch. PLoS Comput Biol 2: e123.
-
(2006)
PLoS Comput Biol
, vol.2
-
-
Chickarmane, V.1
Troein, C.2
Nuber, U.A.3
Sauro, H.M.4
Peterson, C.5
-
15
-
-
58149385724
-
Developmental biology. Pluripotent chromatin state
-
Chi AS, Bernstein BE (2009) Developmental biology. Pluripotent chromatin state. Science 323: 220-221.
-
(2009)
Science
, vol.323
, pp. 220-221
-
-
Chi, A.S.1
Bernstein, B.E.2
-
16
-
-
34248169728
-
The polycomb group protein Suz12 is required for embryonic stem cell differentiation
-
Pasini D, Bracken AP, Hansen JB, Capillo M, Helin K (2007) The polycomb group protein Suz12 is required for embryonic stem cell differentiation. Mol Cell Biol 27: 3769-3779.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 3769-3779
-
-
Pasini, D.1
Bracken, A.P.2
Hansen, J.B.3
Capillo, M.4
Helin, K.5
-
17
-
-
0033166982
-
Skeletal dysplasias, growth retardation, reduced postnatal survival, and impaired fertility in mice lacking the SNF2/SWI2 family member ETL1
-
Schoor M, Schuster-Gossler K, Roopenian D, Gossler A (1999) Skeletal dysplasias, growth retardation, reduced postnatal survival, and impaired fertility in mice lacking the SNF2/SWI2 family member ETL1. Mech Dev 85: 73-83.
-
(1999)
Mech Dev
, vol.85
, pp. 73-83
-
-
Schoor, M.1
Schuster-Gossler, K.2
Roopenian, D.3
Gossler, A.4
-
18
-
-
50049132579
-
The novel protein complex with SMARCAD1/KIAA1122 binds to the vicinity of TSS
-
Okazaki N, Ikeda S, Ohara R, Shimada K, Yanagawa T, et al. (2008) The novel protein complex with SMARCAD1/KIAA1122 binds to the vicinity of TSS. J Mol Biol 382: 257-265.
-
(2008)
J Mol Biol
, vol.382
, pp. 257-265
-
-
Okazaki, N.1
Ikeda, S.2
Ohara, R.3
Shimada, K.4
Yanagawa, T.5
-
19
-
-
0035684378
-
A model for measurement error for gene expression arrays
-
Rocke DM, Durbin B (2001) A model for measurement error for gene expression arrays. J Comput Biol 8: 557-569.
-
(2001)
J Comput Biol
, vol.8
, pp. 557-569
-
-
Rocke, D.M.1
Durbin, B.2
-
20
-
-
12344280017
-
Summaries of Affymetrix GeneChip probe level data
-
Irizarry RA, Bolstad BM, Collin F, Cope LM, Hobbs B, et al. (2003) Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res 31: e15.
-
(2003)
Nucleic Acids Res
, vol.31
-
-
Irizarry, R.A.1
Bolstad, B.M.2
Collin, F.3
Cope, L.M.4
Hobbs, B.5
-
21
-
-
1342330572
-
A benchmark for Affymetrix GeneChip expression measures
-
Cope LM, Irizarry RA, Jaffee HA, Wu Z, Speed TP (2004) A benchmark for Affymetrix GeneChip expression measures. Bioinformatics 20: 323-331.
-
(2004)
Bioinformatics
, vol.20
, pp. 323-331
-
-
Cope, L.M.1
Irizarry, R.A.2
Jaffee, H.A.3
Wu, Z.4
Speed, T.P.5
-
22
-
-
0012572299
-
A variance-stabilizing transformation for gene-expression microarray data
-
Durbin BP, Hardin JS, Hawkins DM, Rocke DM (2002) A variance-stabilizing transformation for gene-expression microarray data. Bioinformatics 18 Suppl 1: S105-110.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Durbin, B.P.1
Hardin, J.S.2
Hawkins, D.M.3
Rocke, D.M.4
-
23
-
-
2342422717
-
At what scale should microarray data be analyzed?
-
Huang S, Yeo A, Gelbert L, Lin X, Nisenbaum L, et al. (2004) At what scale should microarray data be analyzed? Am J Pharmacogenomics 4: 129-139.
-
(2004)
Am J Pharmacogenomics
, vol.4
, pp. 129-139
-
-
Huang, S.1
Yeo, A.2
Gelbert, L.3
Lin, X.4
Nisenbaum, L.5
-
24
-
-
1242345793
-
Parameter estimation for the calibration and variance stabilization of microarray data
-
Huber W, von Heydebreck A, Sueltmann H, Poustka A, Vingron M (2003) Parameter estimation for the calibration and variance stabilization of microarray data. Statistical Applications in Genetics and Molecular Biology 2: 3.
-
(2003)
Statistical Applications in Genetics and Molecular Biology
, vol.2
, pp. 3
-
-
Huber, W.1
von Heydebreck, A.2
Sueltmann, H.3
Poustka, A.4
Vingron, M.5
-
26
-
-
0042424602
-
Statistical significance for genomewide studies
-
Storey JD, Tibshirani R (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci U S A 100: 9440-9445.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
27
-
-
0037131389
-
Stemness: Transcriptional profiling of embryonic and adult stem cells
-
Ramalho-Santos M, Yoon S, Matsuzaki Y, Mulligan RC, Melton DA (2002) "Stemness": transcriptional profiling of embryonic and adult stem cells. Science 298: 597-600.
-
(2002)
Science
, vol.298
, pp. 597-600
-
-
Ramalho-Santos, M.1
Yoon, S.2
Matsuzaki, Y.3
Mulligan, R.C.4
Melton, D.A.5
-
28
-
-
0021891053
-
The in vitro development of blastocyst-derived embryonic stem cell lines: Formation of visceral yolk sac, blood islands and myocardium
-
Doetschman TC, Eistetter H, Katz M, Schmidt W, Kemler R (1985) The in vitro development of blastocyst-derived embryonic stem cell lines: formation of visceral yolk sac, blood islands and myocardium. J Embryol Exp Morphol 87: 27-45.
-
(1985)
J Embryol Exp Morphol
, vol.87
, pp. 27-45
-
-
Doetschman, T.C.1
Eistetter, H.2
Katz, M.3
Schmidt, W.4
Kemler, R.5
-
29
-
-
0025334260
-
Mouse embryonic stem cells express the cardiac myosin heavy chain genes during development in vitro
-
Robbins J, Gulick J, Sanchez A, Howles P, Doetschman T (1990) Mouse embryonic stem cells express the cardiac myosin heavy chain genes during development in vitro. J Biol Chem 265: 11905-11909.
-
(1990)
J Biol Chem
, vol.265
, pp. 11905-11909
-
-
Robbins, J.1
Gulick, J.2
Sanchez, A.3
Howles, P.4
Doetschman, T.5
-
30
-
-
0035793042
-
Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
-
Li C, Wong WH (2001) Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc Natl Acad Sci U S A 98: 31-36.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 31-36
-
-
Li, C.1
Wong, W.H.2
-
31
-
-
1542336952
-
Rational siRNA design for RNA interference
-
Reynolds A, Leake D, Boese Q, Scaringe S, Marshall WS, et al. (2004) Rational siRNA design for RNA interference. Nat Biotechnol 22: 326-330.
-
(2004)
Nat Biotechnol
, vol.22
, pp. 326-330
-
-
Reynolds, A.1
Leake, D.2
Boese, Q.3
Scaringe, S.4
Marshall, W.S.5
-
32
-
-
1642346273
-
Guidelines for the selection of highly effective siRNA sequences for mammalian and chick RNA interference
-
Ui-Tei K, Naito Y, Takahashi F, Haraguchi T, Ohki-Hamazaki H, et al. (2004) Guidelines for the selection of highly effective siRNA sequences for mammalian and chick RNA interference. Nucleic Acids Res 32: 936-948.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 936-948
-
-
Ui-Tei, K.1
Naito, Y.2
Takahashi, F.3
Haraguchi, T.4
Ohki-Hamazaki, H.5
-
33
-
-
0344022572
-
Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity
-
Ng HH, Robert F, Young RA, Struhl K (2003) Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. Mol Cell 11: 709-719.
-
(2003)
Mol Cell
, vol.11
, pp. 709-719
-
-
Ng, H.H.1
Robert, F.2
Young, R.A.3
Struhl, K.4
|