-
1
-
-
33947252154
-
-
Sharan, R., et al., Network-based prediction of protein function, Molecular Systems Biology, 3:88, 2007.
-
(2007)
Network-based prediction of protein function, Molecular Systems Biology
, vol.3
, pp. 88
-
-
Sharan, R.1
-
2
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
Barabasi, A.-L. and Oltvai, Z.N., Network biology: understanding the cell's functional organization, Nature Reviews: Genetics, 5:213-222, 2004.
-
(2004)
Nature Reviews: Genetics
, vol.5
, pp. 213-222
-
-
Barabasi, A.-L.1
Oltvai, Z.N.2
-
3
-
-
34347329333
-
-
Wang, Z. and Zhang, J., In search of the biological significance of modular structures in protein networks, PLoS Computational Biology, 3:e107, 2007.
-
(2007)
In search of the biological significance of modular structures in protein networks, PLoS Computational Biology
, vol.3
-
-
Wang, Z.1
Zhang, J.2
-
4
-
-
2942552459
-
An automated method for finding molecular complexes in large protein interaction networks
-
Bader, G.D. and Hogue, C.W., An automated method for finding molecular complexes in large protein interaction networks, BMC Bioinformatics, 4:2, 2003.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 2
-
-
Bader, G.D.1
Hogue, C.W.2
-
5
-
-
20444504323
-
Uncovering the overlapping community structure of complex networks in nature and society
-
Palla, G., Derenyi, I., Farkas, I. and Vicsek, T., Uncovering the overlapping community structure of complex networks in nature and society, Nature, 435:814-818, 2005.
-
(2005)
Nature
, vol.435
, pp. 814-818
-
-
Palla, G.1
Derenyi, I.2
Farkas, I.3
Vicsek, T.4
-
6
-
-
13244292287
-
Clustering proteins from interaction networks for the prediction of cellular functions
-
Brun, C., Herrmann, C. and Guenoche, A., Clustering proteins from interaction networks for the prediction of cellular functions, BMC Bioinformatics, 5:95, 2004.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 95
-
-
Brun, C.1
Herrmann, C.2
Guenoche, A.3
-
7
-
-
25444490121
-
The use of edge-betweenness clustering to investigate biological function in protein interaction networks
-
Dunn, R., Dudbridge, F. and Sanderson, C.M., The use of edge-betweenness clustering to investigate biological function in protein interaction networks, BMC Bioinformatics, 6:39, 2005.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 39
-
-
Dunn, R.1
Dudbridge, F.2
Sanderson, C.M.3
-
8
-
-
33846681448
-
Modular organization of protein interaction networks
-
Luo, F., Yang, Y., Chen, C.-F., Chang, R., Zhou, J. and Scheuermann, R.H., Modular organization of protein interaction networks, Bioinformatics, 23:207-214, 2007.
-
(2007)
Bioinformatics
, vol.23
, pp. 207-214
-
-
Luo, F.1
Yang, Y.2
Chen, C.-F.3
Chang, R.4
Zhou, J.5
Scheuermann, R.H.6
-
9
-
-
3042848952
-
Evidence for dynamically organized modularity in the yeast protein-protein interaction network
-
Han, J.-D.J., et al., Evidence for dynamically organized modularity in the yeast protein-protein interaction network, Nature, 430:88-93, 2004.
-
(2004)
Nature
, vol.430
, pp. 88-93
-
-
Han, J.-D.J.1
-
10
-
-
15844364199
-
Understanding protein dispensability through machine-learning analysis of high-throughput data
-
Chen, Y. and Xu, D., Understanding protein dispensability through machine-learning analysis of high-throughput data, Bioinformatics, 21:575-581, 2005.
-
(2005)
Bioinformatics
, vol.21
, pp. 575-581
-
-
Chen, Y.1
Xu, D.2
-
11
-
-
33745712594
-
Why do hubs tend to be essential in protein networks?, PLoS
-
He, X. and Zhang, J., Why do hubs tend to be essential in protein networks?, PLoS Genetics, 2:e88, 2006.
-
(2006)
Genetics
, vol.2
-
-
He, X.1
Zhang, J.2
-
12
-
-
16844363315
-
Modularity and evolutionary constraint on proteins
-
Fraser, H.B., Modularity and evolutionary constraint on proteins, Nature Genetics, 37:351-352, 2005.
-
(2005)
Nature Genetics
, vol.37
, pp. 351-352
-
-
Fraser, H.B.1
-
13
-
-
33645536978
-
Protein-protein interactions, evolutionary rate, abundance and age
-
Saeed, R. and Deane, C.M., Protein-protein interactions, evolutionary rate, abundance and age, BMC Bioinformatics, 7:128, 2006.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 128
-
-
Saeed, R.1
Deane, C.M.2
-
14
-
-
0032482432
-
Collective dynamics of 'small-world' networks
-
Watts, D.J. and Strogatz, S.H., Collective dynamics of 'small-world' networks, Nature, 393:440-442, 1998.
-
(1998)
Nature
, vol.393
, pp. 440-442
-
-
Watts, D.J.1
Strogatz, S.H.2
-
15
-
-
0347755535
-
The database of interacting proteins: 2004 update
-
Salwinski, L., Miller, C.S., Smith, A.J., Pettit, F.K., Bowie, J.U. and Eisenberg, D., The database of interacting proteins: 2004 update, Nucleic Acid Research, 32:D449-D451, 2004.
-
(2004)
Nucleic Acid Research
, vol.32
-
-
Salwinski, L.1
Miller, C.S.2
Smith, A.J.3
Pettit, F.K.4
Bowie, J.U.5
Eisenberg, D.6
-
16
-
-
0242500972
-
Construction of reliable protein-protein interaction networks with a new interaction generality measure
-
Saito, R., Suzuki, H. and Hayashizaki, Y., Construction of reliable protein-protein interaction networks with a new interaction generality measure, Bioinformatics, 19:756-763, 2003.
-
(2003)
Bioinformatics
, vol.19
, pp. 756-763
-
-
Saito, R.1
Suzuki, H.2
Hayashizaki, Y.3
-
17
-
-
33747850574
-
Increasing confidence of protein interactomes using network topological metrics
-
Chen, J., Hsu, W., Lee, M.L. and Ng, S.-K., Increasing confidence of protein interactomes using network topological metrics, Bioinformatics, 22:1998-2004, 2006.
-
(2006)
Bioinformatics
, vol.22
, pp. 1998-2004
-
-
Chen, J.1
Hsu, W.2
Lee, M.L.3
Ng, S.-K.4
-
18
-
-
54349106706
-
A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge
-
Cho, Y.-R., Shi, L., Ramanathan, M. and Zhang, A., A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge, BMC Bioinformatics, 9:382, 2008.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 382
-
-
Cho, Y.-R.1
Shi, L.2
Ramanathan, M.3
Zhang, A.4
-
19
-
-
0347473809
-
Gaining confidence in high-throughput protein interaction network
-
Bader, J.S., Chaudhuri, A., Rothberg, J.M. and Chant, J., Gaining confidence in high-throughput protein interaction network, Nature Biotechnology, 22:78-85, 2004.
-
(2004)
Nature Biotechnology
, vol.22
, pp. 78-85
-
-
Bader, J.S.1
Chaudhuri, A.2
Rothberg, J.M.3
Chant, J.4
-
20
-
-
33646358998
-
Prediction of yeast protein-protein interaction network: Insights from the Gene Ontology and annotations
-
Wu, X., Zhu, L., Guo, J., Zhang, D.-Y. and Lin, K., Prediction of yeast protein-protein interaction network: insights from the Gene Ontology and annotations, Nucleic Acids Research, 34:2137-2150, 2006.
-
(2006)
Nucleic Acids Research
, vol.34
, pp. 2137-2150
-
-
Wu, X.1
Zhu, L.2
Guo, J.3
Zhang, D.-Y.4
Lin, K.5
-
21
-
-
34548511546
-
Semantic integration to identify overlapping functional modules in protein interaction networks
-
Cho, Y.-R., Hwang, W., Ramanathan, M. and Zhang, A., Semantic integration to identify overlapping functional modules in protein interaction networks, BMC Bioinformatics, 8:265, 2007.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 265
-
-
Cho, Y.-R.1
Hwang, W.2
Ramanathan, M.3
Zhang, A.4
-
22
-
-
84984996500
-
-
The Gene Ontology Consortium, Nucleic Acids Research
-
The Gene Ontology Consortium, The Gene Ontology project in 2008, Nucleic Acids Research, 36:D440-D444, 2008.
-
(2008)
The Gene Ontology project in 2008
, vol.36
-
-
|