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Volumn 22, Issue 16, 2006, Pages 1998-2004

Increasing confidence of protein interactomes using network topological metrics

Author keywords

[No Author keywords available]

Indexed keywords

CAENORHABDITIS ELEGANS PROTEIN; DROSOPHILA PROTEIN; SACCHAROMYCES CEREVISIAE PROTEIN;

EID: 33747850574     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btl335     Document Type: Article
Times cited : (65)

References (21)
  • 1
    • 12144290243 scopus 로고    scopus 로고
    • Structure-based assembly of protein complexes in yeast
    • Aloy,P. et al. (2004) Structure-based assembly of protein complexes in yeast. Science, 303, 2026-2029.
    • (2004) Science , vol.303 , pp. 2026-2029
    • Aloy, P.1
  • 2
    • 16244412901 scopus 로고    scopus 로고
    • Systematic assessment of high-throughput experimental data for reliable protein interactions using network topology
    • In Boca Raton, Florida
    • Chen,J. et al. (2004) Systematic assessment of high-throughput experimental data for reliable protein interactions using network topology. In Proceedings of International Conference on Tools with Artificial Intelligence, Boca Raton, Florida pp. 368-372.
    • (2004) Proceedings of International Conference on Tools With Artificial Intelligence , pp. 368-372
    • Chen, J.1
  • 3
    • 24144466886 scopus 로고    scopus 로고
    • Towards discovering reliable protein interactions from high-throughput experimental data using network topology
    • Chen,J. et al. (2005) Towards discovering reliable protein interactions from high-throughput experimental data using network topology. Artif. Intell. medi., 35, 37-47,
    • (2005) Artif. Intell. Medi. , vol.35 , pp. 37-47
    • Chen, J.1
  • 4
    • 0036580169 scopus 로고    scopus 로고
    • Protein interactions: Two methods for assessment of the reliability of high throughput observations
    • Deane,C.M. et al. (2002) Protein interactions: Two methods for assessment of the reliability of high throughput observations. Mol. Cell Proteomics, 1, 349-356.
    • (2002) Mol. Cell Proteomics , vol.1 , pp. 349-356
    • Deane, C.M.1
  • 5
    • 0036799752 scopus 로고    scopus 로고
    • Inferring domain-domain interactions from protein-protein interactions
    • Deng,M. et al. (2002) Inferring domain-domain interactions from protein-protein interactions. Genome Res., 12, 1540-1548.
    • (2002) Genome Res. , vol.12 , pp. 1540-1548
    • Deng, M.1
  • 6
    • 0037245913 scopus 로고    scopus 로고
    • Bind: The biomolecular interaction network database
    • GD,B. et al. (2003) Bind: The biomolecular interaction network database. Nucleic Acids Res., 31, 248-250.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 248-250
    • GD, B.1
  • 7
    • 0033974688 scopus 로고    scopus 로고
    • Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins
    • Ito,T. et al. (2000) Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins. Proc. Natl Acad. Sci. USA, 97, 1143-1147.
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 1143-1147
    • Ito, T.1
  • 8
    • 22844450110 scopus 로고    scopus 로고
    • Systematic interpretation of genetic interactions using protein networks
    • Kelley,R. and Ideker,T. (2005) Systematic interpretation of genetic interactions using protein networks. Nat. Biotechnol., 23, 561-566.
    • (2005) Nat. Biotechnol. , vol.23 , pp. 561-566
    • Kelley, R.1    Ideker, T.2
  • 9
    • 0035369531 scopus 로고    scopus 로고
    • Protein-protein interaction maps: A lead towards cellular functions
    • Legrain,P. et al. (2001) Protein-protein interaction maps: A lead towards cellular functions. Trends Genet., 17, 346-352.
    • (2001) Trends Genet. , vol.17 , pp. 346-352
    • Legrain, P.1
  • 10
    • 0038478096 scopus 로고    scopus 로고
    • Semantic similarity measures as tools for exploring the gene ontology
    • In Lihue, Hawaii
    • Lord,P. et al. (2003) Semantic similarity measures as tools for exploring the gene ontology. In Proceedings of the Pacific Symposium on Biocomputing, Lihue, Hawaii, pp. 601-612.
    • (2003) Proceedings of the Pacific Symposium on Biocomputing , pp. 601-612
    • Lord, P.1
  • 11
    • 0035211290 scopus 로고    scopus 로고
    • Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or 'interologs'
    • Matthews,L.R. et al. (2001) Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or 'interologs'. Genome Res., 11, 2120-6.
    • (2001) Genome Res. , vol.11 , pp. 2120-2126
    • Matthews, L.R.1
  • 12
    • 0034628487 scopus 로고    scopus 로고
    • Proteomics: Guilt-by-association goes global
    • Oliver,S. (2000) Proteomics: Guilt-by-association goes global. Nature, 403, 601-603.
    • (2000) Nature , vol.403 , pp. 601-603
    • Oliver, S.1
  • 14
    • 0242500972 scopus 로고    scopus 로고
    • Construction of reliable protein-protein interaction networks with a new interaction generality measure
    • Saito,R. et al. (2002) Construction of reliable protein-protein interaction networks with a new interaction generality measure. Bioinformatics, 19, 756-763.
    • (2002) Bioinformatics , vol.19 , pp. 756-763
    • Saito, R.1
  • 15
    • 0036493195 scopus 로고    scopus 로고
    • Interaction generality, a measurement to assess the reliability of a protein-protein interaction
    • Saito,R. et al. (2002) Interaction generality, a measurement to assess the reliability of a protein-protein interaction. Nucleic Acids Res., 30, 1163-1168.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1163-1168
    • Saito, R.1
  • 16
    • 0035235887 scopus 로고    scopus 로고
    • Two-hybrid system and false positives. approaches to detection and elimination
    • Serebriiskii,I. and Golemis,E. (2001) Two-hybrid system and false positives. approaches to detection and elimination. Methods Mol. Biol., 177, 123-134.
    • (2001) Methods Mol. Biol. , vol.177 , pp. 123-134
    • Serebriiskii, I.1    Golemis, E.2
  • 17
    • 0037432528 scopus 로고    scopus 로고
    • How reliable are experimental protein-protein interaction data?
    • Sprinzak,E. et al. (2003) How reliable are experimental protein-protein interaction data? J. Mol. Biol., 327, 919-923.
    • (2003) J. Mol. Biol. , vol.327 , pp. 919-923
    • Sprinzak, E.1
  • 18
    • 0033780375 scopus 로고    scopus 로고
    • Prediction of protein interactions: Metabolic enzymes are frequently involved in gene fusion
    • Tsoka,S. and Ouzounis,C.A. (2000) Prediction of protein interactions: metabolic enzymes are frequently involved in gene fusion. Nat. Genet., 26, 141-142.
    • (2000) Nat. Genet. , vol.26 , pp. 141-142
    • Tsoka, S.1    Ouzounis, C.A.2
  • 19
    • 0034628508 scopus 로고    scopus 로고
    • A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
    • Uetz,P. et al. (2000) A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature, 403, 623-627.
    • (2000) Nature , vol.403 , pp. 623-627
    • Uetz, P.1
  • 20
    • 0037161731 scopus 로고    scopus 로고
    • Comparative assessment of largescale data sets of protein-protein interactions
    • von Mering,C. et al. (2002) Comparative assessment of largescale data sets of protein-protein interactions. Nature, 417, 399-403.
    • (2002) Nature , vol.417 , pp. 399-403
    • von Mering, C.1
  • 21
    • 0035224503 scopus 로고    scopus 로고
    • Protein-protein interaction map inference using interacting domain profile pairs
    • Wojcik,J. and Schachter,V. (2001) Protein-protein interaction map inference using interacting domain profile pairs. Bioinformatics, 17 (Suppl. 1), S296-305.
    • (2001) Bioinformatics , vol.17 , Issue.SUPPL. 1
    • Wojcik, J.1    Schachter, V.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.