The γ class of carbonic anhydrases

Biochimica et Biophysica Acta - Proteins and Proteomics

Volumn 1804, Issue 2, 2010, Pages 374-381

  Ferry, James G ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

Archaea; Carbonic anhydrase; Gamma class; Iron; Mechanism; Methane

Indexed keywords

BICARBONATE; CARBON DIOXIDE; CARBONATE DEHYDRATASE; GAMMA CARBONIC ANHYDRASE; HISTIDINE; MONOMER; UNCLASSIFIED DRUG;

BETA CHAIN; CRYSTAL STRUCTURE; ENZYME ACTIVE SITE; ENZYME ACTIVITY; ENZYME MECHANISM; GENE SEQUENCE; HYDROGEN BOND; KINETICS; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PROKARYOTE; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN FUNCTION; PROTEIN STRUCTURE; PROTEIN TRANSPORT; REVIEW;

AMINO ACID SEQUENCE; ARCHAEA; CARBONIC ANHYDRASES; CATALYSIS; MOLECULAR SEQUENCE DATA; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 74449089655     PISSN: 15709639     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbapap.2009.08.026     Document Type: Review

References (48)

1. Hewett-Emmett D. Evolution and distribution of the carbonic anhydrase gene families in The Carbonic Anhydrases. In: Chegwidden W.R., Carter N.D., and Edwards Y.H. (Eds). The Carbonic Anhydrases (2000), Birkhauser Verlag, Basel 29-76
2. Smith K.S., Jakubzick C., Whittam T.C., and Ferry J.G. Carbonic anhydrase is an ancient enzyme widespread in prokaryotes. Proc. Natl. Acad. Sci. U. S. A. 96 (1999) 15184-15189
3. Park H., Song B., and Morel F.M. Diversity of the cadmium-containing carbonic anhydrase in marine diatoms and natural waters. Environ. Microbiol. 9 (2007) 403-413
4. Smith K.S., and Ferry J.G. Procaryotic carbonic anhydrases. FEMS Microbiol. Rev. 24 (2000) 335-366
5. Smith K.S., Cosper N.J., Stalhandske C., Scott R.A., and Ferry J.G. Structural and kinetic characterization of an archaeal β-class carbonic anhydrase. J. Bacteriol. 182 (2000) 6605-6613
6. Zimmerman S.A., and Ferry J.G. The beta and gamma classes of carbonic anhydrase. Curr. Pharm. Des. 14 (2008) 716-721
7. Smith K.S., and Ferry J.G. A plant-type (beta-class) carbonic anhydrase in the thermophilic methanoarchaeon Methanobacterium thermoautotrophicum. J. Bacteriol. 181 (1999) 6247-6253
8. Strop P., Smith K.S., Iverson T.M., Ferry J.G., and Rees D.C. Crystal structure of the "cab"-type β-class carbonic anhydrase from the archaeon Methanobacterium thermoautotrophicum. J. Biol. Chem. 276 (2001) 10299-10305
9. Alber B.E., and Ferry J.G. A carbonic anhydrase from the archaeon Methanosarcina thermophila. Proc. Natl. Acad. Sci. U. S. A. 91 (1994) 6909-6913
10. Tripp B.C., Smith K., and Ferry J.G. Carbonic anhydrase: new insights for an ancient enzyme. J. Biol. Chem. 276 (2001) 48615-48618
11. Parisi G., Perales M., Fornasari M., Colaneri A., Schain N., Casati D., Zimmermann S., Brennicke A., Araya A., Ferry J.G., Echave J., and Zabaleta E. Gamma carbonic anhydrases in plant mitochondria. Plant Mol. Biol. 55 (2004) 193-207
12. Tripp B.C., and Ferry J.G. A structure-function study of a proton transport pathway in a novel γ-class carbonic anhydrase from Methanosarcina thermophila. Biochemistry 39 (2000) 9232-9240
13. Jeyakanthan J., Rangarajan S., Mridula P., Kanaujia S.P., Shiro Y., Kuramitsu S., Yokoyama S., and Sekar K. Observation of a calcium-binding site in the γ-class carbonic anhydrase from Pyrococcus horikoshii. Acta Crystallogr. D Biol. Crystallogr. 64 (2008) 1012-1019
14. Iverson T.M., Alber B.E., Kisker C., Ferry J.G., and Rees D.C. A closer look at the active site of γ-carbonic anhydrases: High resolution crystallographic studies of the carbonic anhydrase from Methanosarcina thermophila. Biochemistry 39 (2000) 9222-9231
15. Parisi G., Fornasari M., and Echave J. Evolutionary analysis of γ-carbonic anhydrase and structurally related proteins. Mol. Phylogenet. Evol. 14 (2000) 323-334
16. The Comprehensive Microbial Resource. J. Craig Venter Institute,.
17. Soto A.R., Zheng H., Shoemaker D., Rodriguez J., Read B.A., and Wahlund T.M. Identification and preliminary characterization of two cDNAs encoding unique carbonic anhydrases from the marine alga Emiliania huxleyi. Appl. Environ. Microbiol. 72 (2006) 5500-5511
18. Kisker C., Schindelin H., Alber B.E., Ferry J.G., and Rees D.C. A left-handed beta-helix revealed by the crystal structure of a carbonic anhydrase from the archaeon Methanosarcina thermophila. EMBO J. 15 (1996) 2323-2330
19. Tripp B.C., Tu C., and Ferry J.G. Role of arginine 59 in the γ-class carbonic anhydrases. Biochemistry 41 (2002) 669-678
20. Merz K.M. Insights into the function of the zinc hydroxide-Thr199-Glu106 hydrogen bonding network in carbonic anhydrases. J. Mol. Biol. 214 (1990) 799-802
21. Xu Y., Feng L., Jeffrey P.D., Shi Y., and Morel F.M. Structure and metal exchange in the cadmium carbonic anhydrase of marine diatoms. Nature 452 (2008) 56-61
22. Kimber M.S., and Pai E.F. The active site architecture of Pisum sativum β-carbonic anhydrase is a mirror image of that of α-carbonic anhydrases. EMBO J. 19 (2000) 1407-1418
23. Alber B.E., and Ferry J.G. Characterization of heterologously produced carbonic anhydrase from Methanosarcina thermophila. J. Bacteriol. 178 (1996) 3270-3274
24. MacAuley S.R., Zimmerman S.A., Apolinario E.E., Evilia C., Hou Y., Ferry J.G., and Sowers K.R. The archetype γ-class carbonic anhydrase (Cam) contains iron when synthesized in vivo. Biochemistry 48 (2009) 817-819
25. Tripp B.C., Bell C.B., Cruz F., Krebs C., and Ferry J.G. A role for iron in an ancient carbonic anhydrase. J. Biol. Chem. 279 (2004) 6683-6687
26. Wu Y., Zhao X., Li P., and Huang H. Impact of Zn, Cu, and Fe on the activity of carbonic anhydrase of erythrocytes in ducks. Biol. Trace Elem. Res. 118 (2007) 227-232
27. Zimmerman S.A., and Ferry J.G. Proposal for a hydrogen bond network in the active site of the prototypic γ-class carbonic anhydrase. Biochemistry 45 (2006) 5149-5157
28. Alber B.E., Colangelo C.M., Dong J., Stålhandske C.M.V., Baird T.T., Tu C., Fierke C.A., Silverman D.N., Scott R.A., and Ferry J.G. Kinetic and spectroscopic characterization of the gamma-carbonic anhydrase from the methanoarchaeon Methanosarcina thermophila. Biochemistry 38 (1999) 13119-13128
29. Liang Z.W., Xue Y.F., Behravan G., Jonsson B.H., and Lindskog S. Importance of the conserved active-site residues Tyr7, Glu106 and Thr199 for the catalytic function of human carbonic anhydrase-II. Eur. J. Biochem. 211 (1993) 821-827
30. Krebs J.F., Ippolito J.A., Christianson D.W., and Fierke C.A. Structural and functional importance of a conserved hydrogen bond network in human carbonic anhydrase-II. J. Biol. Chem. 268 (1993) 27458-27466
31. Tu C., Rowlett R.S., Tripp B.C., Ferry J.G., and Silverman D.N. Chemical rescue of proton transfer in catalysis by carbonic anhydrases in the β- and γ-class. Biochemistry 41 (2002) 15429-15435
32. Tu C., Tripp B.C., Ferry J.G., and Silverman D.N. Bicarbonate as a proton donor in catalysis by Zn(II)-and Co(II)-containing carbonic anhydrases. J. Am. Chem. Soc. 123 (2001) 5861-5866
33. Innocenti A., Zimmerman S.A., Scozzafava A., Ferry J.G., and Supuran C.T. Carbonic anhydrase activators. Activation of the archaeal β-class (Cab) and γ-class (Cam) carbonic anhydrases with amino acids and amines. Bioorg. Med. Chem. Lett. 18 (2008) 6194-6198
34. Zimmerman S., Innocenti A., Casini A., Ferry J.G., Scozzafava A., and Supuran C.T. Carbonic anhydrase inhibitors. Inhibition of the prokaryotic β and γ-class enzymes from Archaea with sulfonamides. Bioorg. Med. Chem. Lett. 14 (2004) 6001-6006
35. Innocenti A., Zimmerman S., Ferry J.G., Scozzafava A., and Supuran C.T. Carbonic anhydrase inhibitors. Inhibition of the beta-class enzyme from the methanoarchaeon Methanobacterium thermoautotrophicum (Cab) with anions. Bioorg. Med. Chem. Lett. 14 (2004) 4563-4567
36. Innocenti A., Zimmerman S., Ferry J.G., Scozzafava A., and Supuran C.T. Carbonic anhydrase inhibitors. Inhibition of the zinc and cobalt γ-class enzyme from the archaeon Methanosarcina thermophila with anions. Bioorg. Med. Chem. Lett. 14 (2004) 3327-3331
37. Hovey R., Lentes S., Ehrenreich A., Salmon K., Saba K., Gottschalk G., Gunsalus R.P., and Deppenmeier U. DNA microarray analysis of Methanosarcina mazei Go1 reveals adaptation to different methanogenic substrates. Mol. Genet. Genomics 273 (2005) 225-239
38. Li L., Li Q., Rohlin L., Kim U., Salmon K., Rejtar T., Gunsalus R.P., Karger B.L., and Ferry J.G. Quantitative proteomic and microarray analysis of the archaeon Methanosarcina acetivorans grown with acetate versus methanol. J. Proteome. Res. 6 (2007) 759-771
39. 3 exchanger binds carbonic anhydrase IV. J. Biol. Chem. 277 (2002) 25239-25246
40. Karrasch M., Bott M., and Thauer R.K. Carbonic anhydrase activity in acetate grown Methanosarcina barkeri. Arch. Microbiol. 151 (1989) 137-142
41. Paiva S., Devaux F., Barbosa S., Jacq C., and Casal M. Ady2p is essential for the acetate permease activity in the yeast Saccharomyces cerevisiae. Yeast 21 (2004) 201-210
42. Smith K.S., and Ingram-Smith C. Methanosaeta, the forgotten methanogen?. Trends Microbiol. 7 (2007) 150-155
43. Jetten M.S.M., Stams A.J.M., and Zehnder A.J.B. Methanogenesis from acetate. A comparison of the acetate metabolism in Methanothrix soehngenii and Methanosarcina spp. FEMS Microbiol. Rev. 88 (1992) 181-198
44. Tiwari A., Singh S., and Ansari S.A. Carbonic anhydrase in relation to higher plants. Photosynthetica 43 (2005) 1-11
45. Sunderhaus S., Dudkina N.V., Jansch L., Klodmann J., Heinemeyer J., Perales M., Zabaleta E., Boekema E.J., and Braun H.P. Carbonic anhydrase subunits form a matrix-exposed domain attached to the membrane arm of mitochondrial complex I in plants. J. Biol. Chem. 281 (2006) 6482-6488
46. Dudkina N.V., Eubel H., Keegstra W., Boekema E.J., and Braun H.P. Structure of a mitochondrial supercomplex formed by respiratory-chain complexes I and III. Proc. Natl. Acad. Sci. U. S. A. 102 (2005) 3225-3229
47. Peters K., Dudkina N.V., Jansch L., Braun H.P., and Boekema E.J. A structural investigation of complex I and I+III2 supercomplex from Zea mays at 11-13 A resolution: assignment of the carbonic anhydrase domain and evidence for structural heterogeneity within complex I. Biochim. Biophys. Acta 1777 (2008) 84-93
48. Mikulski R.L., and Silverman D.N. Proton transfer in catalysis and the role of proton shuttles in carbonic anhydrase. Biochim. Biophys. Acta 1804 (2010) 422-426