메뉴 건너뛰기




Volumn 19, Issue 7, 2000, Pages 1407-1418

The active site architecture of Pisum sativum β-carbonic anhydrase is a mirror image of that of α-carbonic anhydrases

Author keywords

carbonic anhydrase; Convergent evolution; X ray crystallography; Zinc enzyme

Indexed keywords

ACETIC ACID; ALPHA CARBONATE DEHYDRATASE; ARGININE; ASPARTIC ACID; BETA CARBONATE DEHYDRATASE; CARBONATE DEHYDRATASE; CYSTEINE; DIMER; GLUTAMINE; GLYCINE; HISTIDINE; ISOENZYME; PHENYLALANINE; TYROSINE; UNCLASSIFIED DRUG; VALINE; ZINC ION;

EID: 0034599484     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (228)

References (38)
  • 1
    • 0028234521 scopus 로고
    • A carbonic anhydrase from the archaeon Methanosarcina thermophila
    • Alber, B.E. and Ferry, J.G. (1994) A carbonic anhydrase from the archaeon Methanosarcina thermophila. Proc. Natl Acad. Sci. USA, 91, 6909-6913.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 6909-6913
    • Alber, B.E.1    Ferry, J.G.2
  • 2
    • 0005534635 scopus 로고
    • Physico-chemical properties and quaternary structure of carbonic anhydrase from Cicer arietinum leaves
    • Aliev, D.A., Guliev, N.M., Mamedov, A.M. and Tsuprun, V.L. (1986) Physico-chemical properties and quaternary structure of carbonic anhydrase from Cicer arietinum leaves. Biokhimiya, 51, 1785-1794.
    • (1986) Biokhimiya , vol.51 , pp. 1785-1794
    • Aliev, D.A.1    Guliev, N.M.2    Mamedov, A.M.3    Tsuprun, V.L.4
  • 4
    • 0027412196 scopus 로고
    • ALSCRIPT: A tool to format multiple sequence alignments
    • Barton, G.J. (1993) ALSCRIPT: a tool to format multiple sequence alignments. Protein Eng., 6, 37-40.
    • (1993) Protein Eng. , vol.6 , pp. 37-40
    • Barton, G.J.1
  • 5
    • 0032854654 scopus 로고    scopus 로고
    • Possible roles for His 208 in the active-site region of chloroplast carbonic anhydrase from Pisum sativum
    • Björkbacka, H., Johansson, I.M. and Forsman, C. (1999) Possible roles for His 208 in the active-site region of chloroplast carbonic anhydrase from Pisum sativum. Arch. Biochem. Biophys., 361, 17-24.
    • (1999) Arch. Biochem. Biophys. , vol.361 , pp. 17-24
    • Björkbacka, H.1    Johansson, I.M.2    Forsman, C.3
  • 6
    • 0027944676 scopus 로고
    • Spinach carbonic anhydrase: Investigation of the zinc-binding ligands by site-directed mutagenesis, elemental analysis and EXAFS
    • Bracey, M.H., Christiansen, J., Tovar, P., Cramer, S.P. and Bartlett, S.G. (1994) Spinach carbonic anhydrase: investigation of the zinc-binding ligands by site-directed mutagenesis, elemental analysis and EXAFS. Biochemistry, 33, 13126-13131.
    • (1994) Biochemistry , vol.33 , pp. 13126-13131
    • Bracey, M.H.1    Christiansen, J.2    Tovar, P.3    Cramer, S.P.4    Bartlett, S.G.5
  • 7
    • 3543012707 scopus 로고    scopus 로고
    • Crystallography & NMR system: A new software suite for macromolecular structure determination
    • Brünger, A.T. et al. (1998) Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr. D, 54, 905-921.
    • (1998) Acta Crystallogr. D , vol.54 , pp. 905-921
    • Brünger, A.T.1
  • 8
    • 0002473587 scopus 로고    scopus 로고
    • Phase combination and cross-validation in iterated density modification calculations
    • Cowtan, K.D. and Main, P. (1996) Phase combination and cross-validation in iterated density modification calculations. Acta Crystallogr. D, 52, 43-48.
    • (1996) Acta Crystallogr. D , vol.52 , pp. 43-48
    • Cowtan, K.D.1    Main, P.2
  • 9
    • 0025215437 scopus 로고
    • Spinach carbonic anhydrase primary structure deduced from the sequence of a cDNA clone
    • Fawcett, T.W., Browse, J.A., Volokita, M. and Bartlett, S.G. (1990) Spinach carbonic anhydrase primary structure deduced from the sequence of a cDNA clone. J. Biol. Chem., 265, 5414-5417.
    • (1990) J. Biol. Chem. , vol.265 , pp. 5414-5417
    • Fawcett, T.W.1    Browse, J.A.2    Volokita, M.3    Bartlett, S.G.4
  • 10
    • 0026316929 scopus 로고
    • Functional consequences of engineering the hydrophobic pocket of carbonic anhydrase II
    • Fierke, C.A., Calderone, T.L. and Krebs, J.F. (1991) Functional consequences of engineering the hydrophobic pocket of carbonic anhydrase II. Biochemistry, 30, 11054-11063.
    • (1991) Biochemistry , vol.30 , pp. 11054-11063
    • Fierke, C.A.1    Calderone, T.L.2    Krebs, J.F.3
  • 12
    • 0026463503 scopus 로고
    • Structure of native and apo carbonic anhydrase II and structure of some of its anion-ligand complexes
    • Håkansson, K., Carlsson, M., Svensson, L.A. and Liljas, A. (1992) Structure of native and apo carbonic anhydrase II and structure of some of its anion-ligand complexes. J. Mol. Biol., 227, 1192-1204.
    • (1992) J. Mol. Biol. , vol.227 , pp. 1192-1204
    • Håkansson, K.1    Carlsson, M.2    Svensson, L.A.3    Liljas, A.4
  • 13
    • 0026026902 scopus 로고
    • 2 in certain buffers
    • 2 in certain buffers. Anal. Biochem., 192, 85-89.
    • (1991) Anal. Biochem. , vol.192 , pp. 85-89
    • Hatch, M.D.1
  • 14
    • 0032132981 scopus 로고    scopus 로고
    • Intracellular β-carbonic anhydrase of the unicellular green alga Coccomyxa. Cloning of the cDNA and characterization of the functional enzyme overexpressed in Escherichia coli
    • Hiltonen, T., Bjorkbacka, H., Forsman, C., Clarke, A.K. and Samuelsson, G. (1998) Intracellular β-carbonic anhydrase of the unicellular green alga Coccomyxa. Cloning of the cDNA and characterization of the functional enzyme overexpressed in Escherichia coli. Plant Physiol., 117, 1341-1349.
    • (1998) Plant Physiol. , vol.117 , pp. 1341-1349
    • Hiltonen, T.1    Bjorkbacka, H.2    Forsman, C.3    Clarke, A.K.4    Samuelsson, G.5
  • 15
    • 0032005509 scopus 로고    scopus 로고
    • Association of carbonic anhydrase with a Calvin cycle enzyme complex in Nicotiana tabacum
    • Jebanathirajah, J.A. and Coleman, J.R. (1998) Association of carbonic anhydrase with a Calvin cycle enzyme complex in Nicotiana tabacum. Planta, 204, 177-182.
    • (1998) Planta , vol.204 , pp. 177-182
    • Jebanathirajah, J.A.1    Coleman, J.R.2
  • 16
    • 0026745566 scopus 로고
    • Processing of the chloroplast transit peptide of pea carbonic anhydrase in chloroplasts and in Escherichia coli. Identification of two cleavage sites
    • Johansson, I.M. and Forsman, C. (1992) Processing of the chloroplast transit peptide of pea carbonic anhydrase in chloroplasts and in Escherichia coli. Identification of two cleavage sites. FEBS Lett., 314, 232-236.
    • (1992) FEBS Lett. , vol.314 , pp. 232-236
    • Johansson, I.M.1    Forsman, C.2
  • 17
    • 0027131280 scopus 로고
    • Kinetic studies of pea carbonic anhydrase
    • Johansson, I.M. and Forsman, C. (1993) Kinetic studies of pea carbonic anhydrase. Eur. J. Biochem., 218, 439-446.
    • (1993) Eur. J. Biochem. , vol.218 , pp. 439-446
    • Johansson, I.M.1    Forsman, C.2
  • 18
    • 0028108832 scopus 로고
    • 2 hydration catalysed by carbonic anhydrase from Pisum sativum
    • 2 hydration catalysed by carbonic anhydrase from Pisum sativum. Eur. J. Biochem., 224, 901-907.
    • (1994) Eur. J. Biochem. , vol.224 , pp. 901-907
    • Johansson, I.M.1    Forsman, C.2
  • 19
    • 84889120137 scopus 로고
    • Improved methods for binding protein models in electron density maps and the location of errors in these models
    • Jones, T.A., Zou, J.Y., Cowan, S.W. and Kjeldgaard, M. (1991) Improved methods for binding protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A, 47, 110-119.
    • (1991) Acta Crystallogr. A , vol.47 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 20
    • 0017819391 scopus 로고
    • Carbonic anhydrase from spinach leaves. Isolation and some chemical properties
    • Kandel, M., Gornall, A.G., Cybulsky, D.L. and Kandel, S.I. (1978) Carbonic anhydrase from spinach leaves. Isolation and some chemical properties. J. Biol. Chem., 253, 679-685.
    • (1978) J. Biol. Chem. , vol.253 , pp. 679-685
    • Kandel, M.1    Gornall, A.G.2    Cybulsky, D.L.3    Kandel, S.I.4
  • 21
    • 0029874435 scopus 로고    scopus 로고
    • A left-hand β-helix revealed by the crystal structure of a carbonic anhydrase from the archaeon Methanosarcina thermophila
    • Kisker, C., Schindelin, H., Alber, B.E., Ferry, J.G. and Rees, D.C. (1996) A left-hand β-helix revealed by the crystal structure of a carbonic anhydrase from the archaeon Methanosarcina thermophila. EMBO J., 15, 2323-2330.
    • (1996) EMBO J. , vol.15 , pp. 2323-2330
    • Kisker, C.1    Schindelin, H.2    Alber, B.E.3    Ferry, J.G.4    Rees, D.C.5
  • 22
    • 0026244229 scopus 로고
    • MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
    • Kraulis, P.J. (1991) MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr., 24, 946-950.
    • (1991) J. Appl. Crystallogr. , vol.24 , pp. 946-950
    • Kraulis, P.J.1
  • 23
    • 0027283352 scopus 로고
    • Kinetic and spectroscopic studies of hydrophilic amino acid substitutions in the hydrophobic pocket of human carbonic anhydrase II
    • Krebs, J.F., Rana, F., Dluhy, R.A. and Fierke, C.A. (1993) Kinetic and spectroscopic studies of hydrophilic amino acid substitutions in the hydrophobic pocket of human carbonic anhydrase II. Biochemistry, 32, 4496-4505.
    • (1993) Biochemistry , vol.32 , pp. 4496-4505
    • Krebs, J.F.1    Rana, F.2    Dluhy, R.A.3    Fierke, C.A.4
  • 24
    • 0015491585 scopus 로고
    • Crystal structure of human carbonic anhydrase C
    • Liljas, A. et al. (1972) Crystal structure of human carbonic anhydrase C. Nature New Biol., 235, 131-137.
    • (1972) Nature New Biol. , vol.235 , pp. 131-137
    • Liljas, A.1
  • 25
    • 0028157224 scopus 로고
    • Inhibition and catalysis of carbonic anhydrase. Recent crystallographic analyses
    • Liljas, A., Håkansson, K., Jonsson, B.H. and Xue, Y. (1994) Inhibition and catalysis of carbonic anhydrase. Recent crystallographic analyses. Eur. J. Biochem., 219, 1-10.
    • (1994) Eur. J. Biochem. , vol.219 , pp. 1-10
    • Liljas, A.1    Håkansson, K.2    Jonsson, B.H.3    Xue, Y.4
  • 26
    • 0030849266 scopus 로고    scopus 로고
    • Structure and mechanism of carbonic anhydrase
    • Lindskog, S. (1997) Structure and mechanism of carbonic anhydrase. Pharmacol. Ther., 74, 1-20.
    • (1997) Pharmacol. Ther. , vol.74 , pp. 1-20
    • Lindskog, S.1
  • 27
    • 0028446517 scopus 로고
    • Modification of carbonic anhydrase activity by antisense and over-expression constructs in transgenic tobacco
    • Majeau, N., Amoldo, M.A. and Coleman, J.R. (1994) Modification of carbonic anhydrase activity by antisense and over-expression constructs in transgenic tobacco. Plant Mol. Biol., 25, 377-385.
    • (1994) Plant Mol. Biol. , vol.25 , pp. 377-385
    • Majeau, N.1    Amoldo, M.A.2    Coleman, J.R.3
  • 28
    • 0028057108 scopus 로고
    • Raster3D version 2.0: A program for photorealistic molecular graphics
    • Merritt, E.A. and Murphy, M.E.P. (1994) Raster3D version 2.0: a program for photorealistic molecular graphics. Acta Crystallogr. D, 50, 869-873.
    • (1994) Acta Crystallogr. D , vol.50 , pp. 869-873
    • Merritt, E.A.1    Murphy, M.E.P.2
  • 29
    • 0026047767 scopus 로고
    • Altering the mouth of a hydrophobic pocket. Structure and kinetics of human carbonic anhydrase II mutants at residue Val-121
    • Nair, S.K., Calderone, T.L., Christianson, D.W. and Fierke, C.A. (1991) Altering the mouth of a hydrophobic pocket. Structure and kinetics of human carbonic anhydrase II mutants at residue Val-121. J. Biol. Chem., 266, 17320-17325.
    • (1991) J. Biol. Chem. , vol.266 , pp. 17320-17325
    • Nair, S.K.1    Calderone, T.L.2    Christianson, D.W.3    Fierke, C.A.4
  • 30
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski, Z. and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol., 276, 307-326.
    • (1997) Methods Enzymol. , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 31
    • 0027661747 scopus 로고
    • Characterization of pea chloroplastic carbonic anhydrase. Expression in Escherichia coli and site-directed mutagenesis
    • Provart, N.J., Majeau, N. and Coleman, J.R. (1993) Characterization of pea chloroplastic carbonic anhydrase. Expression in Escherichia coli and site-directed mutagenesis. Plant Mol. Biol., 22, 937-943.
    • (1993) Plant Mol. Biol. , vol.22 , pp. 937-943
    • Provart, N.J.1    Majeau, N.2    Coleman, J.R.3
  • 32
    • 0027127724 scopus 로고
    • 2 hydration catalyzed by human carbonic anhydrase I
    • 2 hydration catalyzed by human carbonic anhydrase I. Biochim. Biophys. Acta, 1120, 81-86.
    • (1992) Biochim. Biophys. Acta , vol.1120 , pp. 81-86
    • Ren, X.1    Lindskog, S.2
  • 34
    • 0029693411 scopus 로고    scopus 로고
    • Subcellular distribution of carbonic anhydrase in Solanum tuberosum L. leaves: Characterization of two compartment-specific isoforms
    • Rumeau, D., Cuine, S., Fina, L., Gault, N., Nicole, M. and Peltier, G. (1996) Subcellular distribution of carbonic anhydrase in Solanum tuberosum L. leaves: characterization of two compartment-specific isoforms. Planta, 199, 79-88.
    • (1996) Planta , vol.199 , pp. 79-88
    • Rumeau, D.1    Cuine, S.2    Fina, L.3    Gault, N.4    Nicole, M.5    Peltier, G.6
  • 35
    • 0028932267 scopus 로고
    • Proton transfer in carbonic anhydrase measured by equilibrium isotope exchange
    • Silverman, D.N. (1995) Proton transfer in carbonic anhydrase measured by equilibrium isotope exchange. Methods Enzymol., 249, 479-503.
    • (1995) Methods Enzymol. , vol.249 , pp. 479-503
    • Silverman, D.N.1
  • 36
    • 0032717842 scopus 로고    scopus 로고
    • A plant-type (β-class) carbonic anhydrase in the thermophilic methanoarchaeon Methanobacterium thermoautotrophicum
    • Smith, K.S. and Ferry, J.G. (1999) A plant-type (β-class) carbonic anhydrase in the thermophilic methanoarchaeon Methanobacterium thermoautotrophicum. J. Bacteriol., 181, 6247-6253.
    • (1999) J. Bacteriol. , vol.181 , pp. 6247-6253
    • Smith, K.S.1    Ferry, J.G.2
  • 37
    • 0033119895 scopus 로고    scopus 로고
    • Automated MAD and MIR structure solution
    • Terwilliger, T.C. and Berendzen, J. (1999) Automated MAD and MIR structure solution. Acta Crystallogr. D, 55, 849-861.
    • (1999) Acta Crystallogr. D , vol.55 , pp. 849-861
    • Terwilliger, T.C.1    Berendzen, J.2
  • 38
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.