Electronic manipulation of DNA, proteins, and nanoparticles for potential circuit assembly

Biosensors and Bioelectronics

Volumn 20, Issue 3, 2004, Pages 606-619

  Zheng, Lifeng ^a   Brody, James P ^a   Burke, Peter J ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Dielectrophoresis; DNA; Nanoparticles; Proteins

Indexed keywords

ELECTRIC RESISTANCE; ELECTROPHORESIS; LITHOGRAPHY; NANOSTRUCTURED MATERIALS; PROTEINS;

DIELECTROPHORESIS; ELECTRODE GEOMETRIES; GOLD ELECTRODES; NANOPARTICLES;

DNA;

BACTERIOPHAGE DNA; BOVINE SERUM ALBUMIN; GOLD; LATEX; NANOPARTICLE;

CONFERENCE PAPER; ELECTRIC CONDUCTIVITY; ELECTRIC RESISTANCE; ELECTRODE; ELECTROPHORESIS; FLUORESCENCE; GEOMETRY; MICROSCOPE;

COATED MATERIALS, BIOCOMPATIBLE; DNA; ELECTROCHEMISTRY; ELECTRODES; ELECTROPHORESIS; MICROMANIPULATION; MICROSCOPY, FLUORESCENCE; NANOSTRUCTURES; PROTEINS;

EID: 7444226887     PISSN: 09565663     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bios.2004.03.029     Document Type: Conference Paper

References (94)

1. Alivisatos A.P., Johnsson K.P., Peng X.G., Wilson T.E., Loweth C.J., Bruchez M.P., Schultz P.G. Organization of 'nanocrystal molecules' using DNA. Nature. 382:1996;609-611
2. Allsopp D.W.E., Milner K.R., Brown A.P., Betts W.B. Impedance technique for measuring dielectrophoretic collection of microbiological particles. J. Phys. D: Appl. Phys. 32:1999;1066-1074
3. Amlani I., Rawlett A.M., Nagahara L.A., Tsui R.K. An approach to transport measurements of electronic molecules. Appl. Phys. Lett. 80:2002;2761-2763
4. Asbury C.L., Diercks A.H., van den Engh G. Trapping of DNA by dielectrophoresis. Electrophoresis. 23:2002;2658-2666
5. Asbury C.L., van den Engh G. Trapping of DNA in nonuniform oscillating electric fields. Biophys. J. 74:1998;1024-1030
6. Bard, A.J., Faulkner, L.R., 2001. Electrochemical Methods: Fundamentals and Applications. Wiley, New York.
7. Bezryadin A., Dekker C. Nanofabrication of electrodes with sub-5 nm spacing for transport experiments on single molecules and metal clusters. J. Vacuum Sci. Technol. B. 15:1997;793-799
8. Bezryadin A., Dekker C., Schmid G. Electrostatic trapping of single conducting nanoparticles between nanoelectrodes. Appl. Phys. Lett. 71:1997;1273-1275
9. Bezryadin A., Westervelt R.M., Tinkham M. Self-assembled chains of graphitized carbon nanoparticles. Appl. Phys. Lett. 74:1999;2699-2701
10. Bhatt K.H., Velev O.D. Control and modeling of the dielectrophoretic assembly of on-chip nanoparticle wires. Langmuir. 20:2004;467-476
11. Braun E., Eichen Y., Sivan U., Ben-Yoseph G. DNA-templated assembly and electrode attachment of a conducting silver wire. Nature. 391:1998;775-778
12. Brown A.P., Milner K.R., Allsopp D.W.E., Betts W.B. Characteristic dielectrophoretic collection of 20 nm latex beads measured by an impedance technique. Electron. Lett. 34:1998;1934-1936
13. Bubke K., Gnewuch H., Hempstead M., Hammer J., Green M.L.H. Optical anisotropy of dispersed carbon nanotubes induced by an electric field. Appl. Phys. Lett. 71:1997;1906-1908
14. Burke, P.J., 2004. Nano-dielectrophoresis: Electronic Nanotweezers In: Nalwa, H.S. (Ed.), Encyclopedia of Nanoscience and Nanotechnology. American Scientific, Stevenson Ranch, CA.
15. Cai L.T., Tabata H., Kawai T. Self-assembled DNA networks and their electrical conductivity. Appl. Phys. Lett. 77:2000;3105-3106
16. Chen J., Reed M.A. Electronic transport of molecular systems. Chem. Phys. 281:2002;127-145
17. Chen X.Q., Saito T., Yamada H., Matsushige K. Aligning single-wall carbon nanotubes with an alternating-current electric field. Appl. Phys. Lett. 78:2001;3714-3716
18. Chou C.F., Tegenfeldt J.O., Bakajin O., Chan S.S., Cox E.C., Darnton N., Duke T., Austin R.H. Electrodeless dielectrophoresis of single- and double-stranded DNA. Biophys. J. 83:2002;2170-2179
19. Debye P., Debye P.P., Eckstein B.H. Dielectric high-frequency method for molecular weight determinations. Phys. Rev. 94:1954;1412-1412
20. Debye P., Debye P.P., Eckstein B.H., Barber W.A., Arquette G.J. Experiments on polymer solution in inhomogeneous electrical fields. J. Chem. Phys. 22:1954;152-153
21. de Pablo P.J., Moreno-Herrero F., Colchero J., Herrero J.G., Herrero P., Baro A.M., Ordejon P., Soler J.M., Artacho E. Absence of dc-conductivity in lambda-DNA. Phys. Rev. Lett. 85:2000;4992-4995
22. Dewarrat F., Calame M., Schonenberger C. Orientation and positioning of DNA molecules with an electric field technique. Single Mol. 3:2002;189-193
23. Diehl M.R., Yaliraki S.N., Beckman R.A., Barahona M., Heath J.R. Selfassembled, deterministic carbon nanotube wiring networks. Angew. Chem. Int. Ed. 41:2001;353
24. Duan X.F., Huang Y., Cui Y., Wang J.F., Lieber C.M. Indium phosphide nanowires as building blocks for nanoscale electronic and optoelectronic devices. Nature. 409:2001;66-69
25. Eisenstadt M., Scheinberg I.H. Dielectrophoresis of macromolecules - determination of diffusion constant of poly-gamma-benzyl-l-glutamate. Science. 176:1972;1335
26. Eisenstadt M., Scheinberg I.H. Dielectrophoresis of macromolecules. Biopolymers. 12:1973;2491-2512
27. Fan F.R.F., Bard A.J. Electrochemical detection of single molecules. Science. 267:1995;871-874
28. Fink H.W., Schonenberger C. Electrical conduction through DNA molecules. Nature. 398:1999;407-410
29. Germishuizen W.A., Walti C., Tosch P., Wirtz R., Pepper M., Davies A.G., Middelberg A.P.J. Dielectrophoretic manipulation of surface-bound DNA. IEE Proc. Nanobiotechnol. 150:2003;54-58
30. Germishuizen W.A., Walti C., Wirtz R., Johnston M.B., Pepper M., Davies A.G., Middelberg A.P.J. Selective dielectrophoretic manipulation of surface-immobilized DNA molecules. Nanotechnology. 14:2003;896-902
31. Green N.G., Morgan H. Dielectrophoretic investigations of sub-micrometre latex spheres. J. Phys. D: Appl. Phys. 30:1997;2626-2633
32. Green N.G., Morgan H. Dielectrophoretic separation of nano-particles. J. Phys. D: Appl. Phys. 30:1997;L41-L44
33. Green N.G., Morgan H. Separation of submicrometre particles using a combination of dielectrophoretic and electrohydrodynamic forces. J. Phys. D: Appl. Phys. 31:1998;L25-L30
34. Green N.G., Morgan H. Dielectrophoresis of submicrometer latex spheres. 1. Experimental results. J. Phys. Chem. B. 103:1999;41-50
35. Green N.G., Ramos A., Morgan H. AC electrokinetics: a survey of submicrometre particle dynamics. J. Phys. D: Appl. Phys. 33:2000;632-641
36. Heath J.R., Ratner M.A. Molecular electronics. Phys. Today. 56:2003;43-49
37. Hermanson K.D., Lumsdon S.O., Williams J.P., Kaler E.W., Velev O.D. Dielectrophoretic assembly of electrically functional microwires from nanoparticle suspensions. Science. 294:2001;1082-1086
38. Holzel R., Bier F.F. Dielectrophoretic manipulation of DNA. IEE Proc. Nanobiotechnol. 150:2003;47-53
39. Holzel R., Gajovic-Eichelmann N., Bier F.F. Oriented and vectorial immobilization of linear M13 dsDNA between interdigitated electrodes - towards single molecule DNA nanostructures. Biosens. Bioelectron. 18:2003;555-564
40. Huang Y., Pethig R. Electrode design for negative dielectrophoresis. Meas. Sci. Technol. 2:1991;1142-1146
41. Hughes M.P. AC electrokinetics: applications for nanotechnology. Nanotechnology. 11:2000;124-132
42. Hughes M.P. Dielectrophoretic behavior of latex nanospheres: low-frequency dispersion. J. Colloid Interface Sci. 250:2002;291-294
43. Hughes M.P., Flynn M.F., Morgan H. Dielectrophoretic measurements of submicrometre latex particles following surface modification. Electrostatics. 163:1999;81-84
44. Hughes M.P., Green N.G. The influence of Stern layer conductance on the dielectrophoretic behavior of latex nanospheres. J. Colloid Interface Sci. 250:2002;266-268
45. Hughes M.P., Morgan H. Dielectrophoretic characterization and separation of antibody coated submicrometer latex spheres. Anal. Chem. 71:1999;3441-3445
46. Hughes M.P., Morgan H., Flynn M.F. The dielectrophoretic behavior of submicron latex spheres: influence of surface conductance. J. Colloid Interface Sci. 220:1999;454-457
47. Jones, T.B., 1995. Electromechanics of Particles. Cambridge University Press, Cambridge.
48. Kabata H., Kurosawa O., Arai I., Washizu M., Margarson S.A., Glass R.E., Shimamoto N. Visualization of single molecules of RNA-polymerase sliding along DNA. Science. 262:1993;1561-1563
49. Kabata H., Okada W., Washizu M. Single-molecule dynamics of the EcoRI enzyme using stretched DNA: its application to in situ sliding assay and optical DNA mapping. Jpn. J. Appl. Phys. Part 1: Regul. Pap. Short Notes Rev. Pap. 39:2000;7164-7171
50. Kasumov A.Y., Kociak M., Gueron S., Reulet B., Volkov V.T., Klinov D.V., Bouchiat H. Proximity-induced superconductivity in DNA. Science. 291:2001;280-282
51. Lee S.W., Bashir R. Dielectrophoresis and electrohydrodynamics-mediated fluidic assembly of silicon resistors. Appl. Phys. Lett. 83:2003;3833-3835
52. Losche A., Hultschig H. Dielekrophorese in Flussigkeiten. Kolloid-Zeitschrift. 141:1955;177-187
53. Luo Y., Collier C.P., Jeppesen J.O., Nielsen K.A., Delonno E., Ho G., Perkins J., Tseng H.R., Yamamoto T., Stoddart J.F., Heath J.R. Two-dimensional molecular electronics circuits. Chemphyschem. 3:2002;519
54. Lyklema, J., 2000. Fundamentals of Interface and Colloid Science. Academic Press, San Diego.
55. Lyklema J., Dukhin S.S., Shilov V.N. The relaxation of the double-layer around colloidal particles and the low-frequency dielectric-dispersion. 1. Theoretical considerations. J. Electroanal. Chem. 143:1983;1-21
56. Lyklema J., Springer M.M., Shilov V.N., Dukhin S.S. The relaxation of the double-layer around colloidal particles and the low-frequency dielectric-dispersion. 3. Application of theory to experiments. J. Electroanal. Chem. 198:1986;19-26
57. Milner K.R., Brown A.P., Allsopp D.W.E., Betts W.B. Dielectrophoretic classification of bacteria using differential impedance measurements. Electron. Lett. 34:1998;66-68
58. Mirkin C.A., Letsinger R.L., Mucic R.C., Storhoff J.J. A DNA-based method for rationally assembling nanoparticles into macroscopic materials. Nature. 382:1996;607-609
59. Morgan, H., Green, N.G., 2003. Electrokinetic Technologies for Sub-Micron Particles. Research Studies Press, Philadelphia, PA.
60. Muller T., Gerardino A., Schnelle T., Shirley S.G., Bordoni F., DeGasperis G., Leoni R., Fuhr G. Trapping of micrometre and sub-micrometre particles by high frequency electric fields and hydrodynamic forces. J. Phys. D: Appl. Phys. 29:1996;340-349
61. Nagahara L.A., Amlani I., Lewenstein J., Tsui R.K. Directed placement of suspended carbon nanotubes for nanometer-scale assembly. Appl. Phys. Lett. 80:2002;3826-3828
62. Namasivayam V., Larson R.G., Burke D.T., Burns M.A. Electrostretching DNA molecules using polymer-enhanced media within microfabricated devices. Anal. Chem. 74:2002;3378-3385
63. Okahata Y., Kobayashi T., Tanaka K., Shimomura M. Anisotropic electric conductivity in an aligned DNA cast film. J. Am. Chem. Soc. 120:1998;6165-6166
64. Okonski C.T. Electric properties of macromolecules. 5. Theory of ionic polarization in polyelectrolytes. J. Phys. Chem. 64:1960;605-619
65. Pethig R. Dielectrophoresis: using inhomogeneous AC electrical fields to separate and manipulate cells. Crit. Rev. Biotechnol. 16:1996;331-348
66. Pethig R., Markx G.H. Applications of dielectrophoresis in biotechnology. Trends Biotechnol. 15:1997;426-432
67. Pohl, H.A., 1978. Dielectrophoresis: The Behavior of Neutral Matter in Nonuniform Electric Fields. Cambridge University Press, Cambridge.
68. Porath D., Bezryadin A., de Vries S., Dekker C. Direct measurement of electrical transport through DNA molecules. Nature. 403:2000;635-638
69. Prock A., Mcconkey G. Inhomogeneous field method for the study of large polarizable particles. J. Chem. Phys. 32:1960;224-236
70. Ramos A., Morgan H., Green N.G., Castellanos A. AC electrokinetics: a review of forces in microelectrode structures. J. Phys. D: Appl. Phys. 31:1998;2338-2353
71. Schwarz G. A theory of low-frequency dielectric dispersion of colloidal particles in electrolyte solution. J. Phys. Chem. 66:1962;2636
72. Shimamoto N. One-dimensional diffusion of proteins along DNA - its biological and chemical significance revealed by single-molecule measurements. J. Biol. Chem. 274:1999;15293-15296
73. Smith P.A., Nordquist C.D., Jackson T.N., Mayer T.S., Martin B.R., Mbindyo J., Mallouk T.E. Electric-field assisted assembly and alignment of metallic nanowires. Appl. Phys. Lett. 77:2000;1399-1401
74. Storm A.J., van Noort J., de Vries S., Dekker C. Insulating behavior for DNA molecules between nanoelectrodes at the 100 nm length scale. Appl. Phys. Lett. 79:2001;3881-3883
75. Stratton, J.A., 1941. Electromagnetic Theory. McGraw-Hill Book Company Inc., New York.
76. Suehiro J., Yatsunami R., Hamada R., Hara M. Quantitative estimation of biological cell concentration suspended in aqueous medium by using dielectrophoretic impedance measurement method. J. Phys. D: Appl. Phys. 32:1999;2814-2820
77. Suzuki S., Yamanashi T., Tazawa S., Kurosawa O., Washizu M. Quantitative analysis of DNA orientation in stationary AC electric fields using fluorescence anisotropy. IEEE Trans. Ind. Appl. 34:1998;75-83
78. Tour J.M. Molecular wires for electronics applications: a review. Polym. News. 25:2000;329-336
79. Tsukahara, S., Yamanaka, K., Watarai, H., 2001. Dielectrophoretic behavior of single DNA in planar and capillary quadrupole microelectrodes. Chem. Lett. 250-251.
80. Ueda M., Iwasaki H., Kurosawa O., Washizu M. Atomic force microscopy observation of deoxyribonucleic acid stretched and anchored onto aluminum electrodes. Jpn. J. Appl. Phys. Part 1: Regul. Pap. Short Notes Rev. Pap. 38:1999;2118-2119
81. Ueda M., Yoshikawa K., Doi M. Stretching of long DNA under alternating current electric fields in a concentrated polymer solution. Polym. J. 29:1997;1040-1043
82. Ueda M., Yoshikawa K., Doi M. Molecular motion of long deoxyribonucleic acid chains in a concentrated polymer solution depending on the frequency of alternating electric field. Polym. J. 31:1999;637-644
83. Wakaya F., Nagai T., Gamo K. Position control of carbon nanotube using patterned electrode and electric field. Microelectron. Eng. 63:2002;27-31
84. Washizu M., Kurosawa O. Electrostatic manipulation of DNA in microfabricated structures. IEEE Trans. Ind. Appl. 26:1990;1165-1172
85. Washizu M., Kurosawa O., Arai I., Suzuki S., Shimamoto N. Applications of electrostatic stretch-and-positioning of DNA. IEEE Trans. Ind. Appl. 31:1995;447-456
86. Washizu M., Shikida M., Aizawa S., Hotani H. Orientation and transformation of flagella in electrostatic-field. IEEE Trans. Ind. Appl. 28:1992;1194-1202
87. Winfree E., Liu F.R., Wenzler L.A., Seeman N.C. Design and self-assembly of two-dimensional DNA crystals. Nature. 394:1998;539-544
88. Yamamoto K., Akita S., Nakayama Y. Orientation of carbon nanotubes using electrophoresis. Jpn. J. Appl. Phys. Part 2: Lett. 35:1996;L917-L918
89. Yamamoto K., Akita S., Nakayama Y. Orientation and purification of carbon nanotubes using ac electrophoresis. J. Phys. D: Appl. Phys. 31:1998;L34-L36
90. Yamamoto T., Kurosawa O., Kabata H., Shimamoto N., Washizu M. Molecular surgery of DNA based on electrostatic micromanipulation. IEEE Trans. Ind. Appl. 36:2000;1010-1017
91. Zheng, L., Li, S., Brody, J.P., Burke, P.J., 2004a. Manipulating nanoparticles in solution with electrically contacted nanotubes using dielectrophoresis. unpublished.
92. Zheng, L., Li, S., Burke, P.J., 2004b. Self-assembled gold nanowires from nanoparticles. unpublished.
93. Zheng, L., Li, S., Burke, P.J., Brody, J.P., 2003. Towards single molecule manipulation with dielectrophoresis using nanoelectrodes. In: Proceedings of the Third IEEE Conference on Nanotechnology, vol. 1, pp. 437-440.
94. Zimmermann, U., Neil, G.A., 1996. Electromanipulation of Cells. CRC Press, Boca Raton, FL.