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Volumn , Issue , 2007, Pages 95-104

FPGA-accelerated seed generation in Mercury BLASTP

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTERS; MERCURY (METAL); PROTEINS; QUERY LANGUAGES;

EID: 47349112881     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/FCCM.2007.11     Document Type: Conference Paper
Times cited : (25)

References (22)
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    • Acceleration of gapped alignment in BLASTP using the Mercury system
    • Technical Report WUCSE-2006-47, Dept. of Computer Science and Engineering, Washington University in St. Louis, August
    • B. B. Harris. Acceleration of gapped alignment in BLASTP using the Mercury system. Technical Report WUCSE-2006-47, Dept. of Computer Science and Engineering, Washington University in St. Louis, August 2006.
    • (2006)
    • Harris, B.B.1
  • 9
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    • Biosequence similarity search on the Mercury system
    • In press
    • P. Krishnamurthy et al. Biosequence similarity search on the Mercury system. Journal of VLSI Signal Processing, 2007. In press.
    • (2007) Journal of VLSI Signal Processing
    • Krishnamurthy, P.1
  • 10
    • 85024265836 scopus 로고    scopus 로고
    • Acceleration of ungapped extension in Mercury BLAST
    • In press
    • J. Lancaster et al. Acceleration of ungapped extension in Mercury BLAST. Int'l J. of Embedded Sys., 2007. In press.
    • (2007) Int'l J. of Embedded Sys
    • Lancaster, J.1
  • 12
    • 33746293354 scopus 로고    scopus 로고
    • H. Lin et al. Efficient data access for parallel BLAST. In Proc. Int'l Parallel and Distributed Processing Symp. (IPDPS), page 72.2, 2005.
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  • 13
    • 3242876311 scopus 로고    scopus 로고
    • BLAST: At the core of a powerful and diverse set of sequence analysis tools
    • S. McGinnis and T. L. Madden. BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nuc. Acids Res., 32:20-5, 2004.
    • (2004) Nuc. Acids Res , vol.32 , pp. 20-25
    • McGinnis, S.1    Madden, T.L.2
  • 14
    • 33746291611 scopus 로고    scopus 로고
    • K. Muriki et al. RC-BLAST: Towards a portable, cost-effective open source hardware implementation. In Proc. Int'l Parallel and Distributed Processing Symp. (IPDPS), page 196.2, 2005.
    • K. Muriki et al. RC-BLAST: Towards a portable, cost-effective open source hardware implementation. In Proc. Int'l Parallel and Distributed Processing Symp. (IPDPS), page 196.2, 2005.
  • 17
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    • Identification of common molecular subsequences
    • T. F. Smith and M. S. Waterman. Identification of common molecular subsequences. Journal of Molecular Biology, 147:195-197, 1981.
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    • Identifying the conserved network of cis-regulatory sites of a eukaryotic genome
    • T. Wang and G. D. Stormo. Identifying the conserved network of cis-regulatory sites of a eukaryotic genome. Proc. Natl. Acad. Sci. USA, 102:17400-5, 2005.
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    • High speed homology search with FPGAs
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* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.