Design space exploration for the BLAST algorithm implementation

Proceedings 2007 IEEE Symposium on Field-Programme Custom Computing Machines, FCCM 2007

Volumn , Issue , 2007, Pages 323-325

  Sotiriades, Euripides ^a   Dollas, Apostolos ^a  

^a TECHNICAL UNIVERSITY OF CRETE   (Greece)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTATION THEORY; COMPUTERS; INTEGRATED CIRCUIT DESIGN; RECONFIGURABLE ARCHITECTURES; RECONFIGURABLE HARDWARE;

ALGORITHM IMPLEMENTATION; DESIGN SPACE EXPLORATION; DNA SEQUENCE MATCHING; FPGA-BASED ARCHITECTURES; RECONFIGURABLE LOGIC; SOFTWARE AND HARDWARES; SPEED UP; VLSI ARCHITECTURES;

BIOINFORMATICS;

EID: 47349085027     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/FCCM.2007.36     Document Type: Conference Paper

References (2)

1. E. Sotiriades, A. Dollas "A General Reconfigurable Architecture for the BLAST Algorithm". Special Issue on Computing Architectures and Acceleration for Bioinformatics Algorithms, The Journal of VLSI Signal Processing Systems for Signal, Image, and Video Technology (accepted, to be published).
2. C. P. Sosa et. al. "Some Practical Suggestions for Performing NCBI BLAST Benchmarks on a pSeries ™ 690 System", http://www.redbooks.ibm. com/abstracts/redp0437.html?Open.