메뉴 건너뛰기




Volumn 42, Issue 3, 2010, Pages 466-472

Distribution of Pseudomonas populations harboring phlD or hcnAB biocontrol genes is related to depth in vineyard soils

Author keywords

2,4 Diacetylphloroglucinol; Biological control; Hydrogen cyanide; Monoculture; Pseudomonas; Soil profiles; Vitis

Indexed keywords

ALLELIC DIVERSITY; BIOLOGICAL CONTROLS; HYDROGEN CYANIDE; POPULATION STRUCTURES; SOIL DEPTH; SOIL HORIZON; SOIL PROFILES; SOIL SAMPLE; SWITZERLAND;

EID: 74349091346     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2009.11.030     Document Type: Article
Times cited : (8)

References (48)
  • 1
    • 1842812502 scopus 로고    scopus 로고
    • Distribution of microbial communities in a forest soil profile investigated by microbial biomass, soil respiration and DGGE of total and extracellular DNA
    • Agnelli A., Ascher J., Corti G., Ceccherini M.T., Nannipieri P., and Pietramellara G. Distribution of microbial communities in a forest soil profile investigated by microbial biomass, soil respiration and DGGE of total and extracellular DNA. Soil Biology & Biochemistry 36 (2004) 859-868
    • (2004) Soil Biology & Biochemistry , vol.36 , pp. 859-868
    • Agnelli, A.1    Ascher, J.2    Corti, G.3    Ceccherini, M.T.4    Nannipieri, P.5    Pietramellara, G.6
  • 2
    • 33751429903 scopus 로고    scopus 로고
    • Using landscape and depth gradients to decouple the impact of correlated environmental variables on soil microbial community composition
    • Allison V.J., Yermakov Z., Miller R.M., Jastrow J.D., and Matamala R. Using landscape and depth gradients to decouple the impact of correlated environmental variables on soil microbial community composition. Soil Biology & Biochemistry 39 (2007) 505-516
    • (2007) Soil Biology & Biochemistry , vol.39 , pp. 505-516
    • Allison, V.J.1    Yermakov, Z.2    Miller, R.M.3    Jastrow, J.D.4    Matamala, R.5
  • 3
    • 0036078096 scopus 로고    scopus 로고
    • Surface and subsurface microbial biomass, community structure and metabolic activity as a function of soil depth and season
    • Blume E., Bischoff M., Reichert J.M., Moorman T., Konopka A., and Turco R.F. Surface and subsurface microbial biomass, community structure and metabolic activity as a function of soil depth and season. Applied Soil Ecology 20 (2002) 171-181
    • (2002) Applied Soil Ecology , vol.20 , pp. 171-181
    • Blume, E.1    Bischoff, M.2    Reichert, J.M.3    Moorman, T.4    Konopka, A.5    Turco, R.F.6
  • 5
    • 25144473901 scopus 로고    scopus 로고
    • Use of plant growth-promoting bacteria for biocontrol of plant diseases: principle, mechanisms of action, and future prospects
    • Compant S., Duffy B., Nowak J., Clément C., and Barka E.A. Use of plant growth-promoting bacteria for biocontrol of plant diseases: principle, mechanisms of action, and future prospects. Applied and Environmental Microbiology 71 (2005) 4951-4959
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 4951-4959
    • Compant, S.1    Duffy, B.2    Nowak, J.3    Clément, C.4    Barka, E.A.5
  • 7
    • 0037227464 scopus 로고    scopus 로고
    • Variations in microbial community composition through two soils depth profiles
    • Fierer N., Schimel J.P., and Holden P.A. Variations in microbial community composition through two soils depth profiles. Soil Biology & Biochemistry 35 (2003) 167-176
    • (2003) Soil Biology & Biochemistry , vol.35 , pp. 167-176
    • Fierer, N.1    Schimel, J.P.2    Holden, P.A.3
  • 8
    • 0033670979 scopus 로고    scopus 로고
    • Distribution of microbial biomass and phospholipids fatty acids in podzol profiles under coniferous forest
    • Fritze H., Pietikäinen J., and Pennanen T. Distribution of microbial biomass and phospholipids fatty acids in podzol profiles under coniferous forest. European Journal of Soil Science 51 (2000) 565-573
    • (2000) European Journal of Soil Science , vol.51 , pp. 565-573
    • Fritze, H.1    Pietikäinen, J.2    Pennanen, T.3
  • 9
    • 4744340843 scopus 로고    scopus 로고
    • Microbial diversity in soil: selection of microbial populations by plant and soil type and implications for disease suppressiveness
    • Garbeva P.J., van Veen A., and van Elsas J.D. Microbial diversity in soil: selection of microbial populations by plant and soil type and implications for disease suppressiveness. Annual Review of Phytopathology 42 (2004) 243-270
    • (2004) Annual Review of Phytopathology , vol.42 , pp. 243-270
    • Garbeva, P.J.1    van Veen, A.2    van Elsas, J.D.3
  • 10
    • 0037719668 scopus 로고    scopus 로고
    • FDA's preferred MPN methods for standard, large or unusual tests, with a spreadsheet
    • Garthright W.E., and Blodgett R.J. FDA's preferred MPN methods for standard, large or unusual tests, with a spreadsheet. Food Microbiology 20 (2003) 439-445
    • (2003) Food Microbiology , vol.20 , pp. 439-445
    • Garthright, W.E.1    Blodgett, R.J.2
  • 12
    • 15944409255 scopus 로고    scopus 로고
    • Biological control of soil-borne pathogens by fluorescent pseudomonads
    • Haas D., and Défago G. Biological control of soil-borne pathogens by fluorescent pseudomonads. Nature Reviews Microbiology 3 (2005) 307-319
    • (2005) Nature Reviews Microbiology , vol.3 , pp. 307-319
    • Haas, D.1    Défago, G.2
  • 13
    • 0242507789 scopus 로고    scopus 로고
    • Regulation of antibiotic production in root-colonizing Pseudomonas spp. and relevance for biological control of plant disease
    • Haas D., and Keel C. Regulation of antibiotic production in root-colonizing Pseudomonas spp. and relevance for biological control of plant disease. Annual Review of Phytopathology 41 (2003) 117-153
    • (2003) Annual Review of Phytopathology , vol.41 , pp. 117-153
    • Haas, D.1    Keel, C.2
  • 14
    • 0035074925 scopus 로고    scopus 로고
    • Survival of biocontrol Pseudomonas fluorescens CHA0 in lysimeter effluent water depends on time of the year and soil type
    • Hase C., Nievergelt J., Moënne-Loccoz Y., and Défago G. Survival of biocontrol Pseudomonas fluorescens CHA0 in lysimeter effluent water depends on time of the year and soil type. Journal of Applied Microbiology 90 (2001) 567-577
    • (2001) Journal of Applied Microbiology , vol.90 , pp. 567-577
    • Hase, C.1    Nievergelt, J.2    Moënne-Loccoz, Y.3    Défago, G.4
  • 15
    • 0026614591 scopus 로고
    • Microbial control of silicate weathering in organic-rich ground water
    • Hiebert F., and Bennett P.C. Microbial control of silicate weathering in organic-rich ground water. Science 258 (1992) 278-281
    • (1992) Science , vol.258 , pp. 278-281
    • Hiebert, F.1    Bennett, P.C.2
  • 17
    • 0030070616 scopus 로고    scopus 로고
    • Conservation of the 2,4-diacetylphloroglucinol biosynthesis locus among fluorescent Pseudomonas strains from diverse geographic locations
    • Keel C., Weller D.M., Natsch A., Défago G., Cook R.J., and Thomashow L.S. Conservation of the 2,4-diacetylphloroglucinol biosynthesis locus among fluorescent Pseudomonas strains from diverse geographic locations. Applied and Environmental Microbiology 62 (1996) 552-563
    • (1996) Applied and Environmental Microbiology , vol.62 , pp. 552-563
    • Keel, C.1    Weller, D.M.2    Natsch, A.3    Défago, G.4    Cook, R.J.5    Thomashow, L.S.6
  • 18
    • 0025919420 scopus 로고
    • Biodegradation of organic compounds in vadose zone and aquifer sediments
    • Konopka A., and Turco R. Biodegradation of organic compounds in vadose zone and aquifer sediments. Applied and Environmental Microbiology 57 (1991) 2260-2268
    • (1991) Applied and Environmental Microbiology , vol.57 , pp. 2260-2268
    • Konopka, A.1    Turco, R.2
  • 19
    • 0141438984 scopus 로고    scopus 로고
    • Comparison of subsurface and surface soil bacterial communities in California grassland as assessed by terminal restriction fragment length polymorphisms of PCR-amplified 16S r RNA genes
    • LaMontagne M.G., Schimel J.P., and Holden P.A. Comparison of subsurface and surface soil bacterial communities in California grassland as assessed by terminal restriction fragment length polymorphisms of PCR-amplified 16S r RNA genes. Microbial Ecology 46 (2003) 216-227
    • (2003) Microbial Ecology , vol.46 , pp. 216-227
    • LaMontagne, M.G.1    Schimel, J.P.2    Holden, P.A.3
  • 20
    • 33644942477 scopus 로고    scopus 로고
    • Enrichment and genotypic diversity of phlD-containing fluorescent Pseudomonas spp. in two soils after a century of wheat and flax monoculture
    • Landa B.B., Mavrodi O.V., Schroeder K.L., Allende-Molar R., and Weller D.M. Enrichment and genotypic diversity of phlD-containing fluorescent Pseudomonas spp. in two soils after a century of wheat and flax monoculture. FEMS Microbiology Ecology 55 (2006) 351-368
    • (2006) FEMS Microbiology Ecology , vol.55 , pp. 351-368
    • Landa, B.B.1    Mavrodi, O.V.2    Schroeder, K.L.3    Allende-Molar, R.4    Weller, D.M.5
  • 21
    • 0037296985 scopus 로고    scopus 로고
    • Persistence and cell culturability of biocontrol Pseudomonas fluorescens CHA0 under plough pan conditions in soil and influence of the anaerobic regulator gene anr
    • Mascher F., Schnider-Keel U., Haas D., Défago G., and Moënne-Loccoz Y. Persistence and cell culturability of biocontrol Pseudomonas fluorescens CHA0 under plough pan conditions in soil and influence of the anaerobic regulator gene anr. Environmental Microbiology 5 (2003) 103-115
    • (2003) Environmental Microbiology , vol.5 , pp. 103-115
    • Mascher, F.1    Schnider-Keel, U.2    Haas, D.3    Défago, G.4    Moënne-Loccoz, Y.5
  • 22
    • 4744339126 scopus 로고    scopus 로고
    • Wheat cultivar-specific selection of 2,4-diacetylphloroglucinol-producing fluorescent Pseudomonas species from resident soil populations
    • Mazzola M., Funnell D.L., and Raaijmakers J.M. Wheat cultivar-specific selection of 2,4-diacetylphloroglucinol-producing fluorescent Pseudomonas species from resident soil populations. Microbial Ecology 48 (2004) 338-348
    • (2004) Microbial Ecology , vol.48 , pp. 338-348
    • Mazzola, M.1    Funnell, D.L.2    Raaijmakers, J.M.3
  • 24
    • 0035131007 scopus 로고    scopus 로고
    • A rapid polymerase chain reaction-based assay characterizing rhizosphere populations of 2,4-diacetylphloroglucinol-producing bacteria
    • McSpadden Gardener B.B., Mavrodi D.V., Thomashow L.S., and Weller D.M. A rapid polymerase chain reaction-based assay characterizing rhizosphere populations of 2,4-diacetylphloroglucinol-producing bacteria. Phytopathology 91 (2001) 44-54
    • (2001) Phytopathology , vol.91 , pp. 44-54
    • McSpadden Gardener, B.B.1    Mavrodi, D.V.2    Thomashow, L.S.3    Weller, D.M.4
  • 27
    • 0012753826 scopus 로고
    • Root distribution of three grapevine rootstocks grafted to Cabernet sauvignon grown on a very gravelly clay loam soil in Oakville, California
    • Morano L., and Kliewer W.M. Root distribution of three grapevine rootstocks grafted to Cabernet sauvignon grown on a very gravelly clay loam soil in Oakville, California. American Journal of Enology and Viticulture 45 (1994) 345-348
    • (1994) American Journal of Enology and Viticulture , vol.45 , pp. 345-348
    • Morano, L.1    Kliewer, W.M.2
  • 28
    • 0030038427 scopus 로고    scopus 로고
    • Importance of preferential flow and soil management in vertical transport of a biocontrol strain of Pseudomonas fluorescens in structured field soil
    • Natsch A., Keel C., Troxler J., Zala M., von Albertini N., and Défago G. Importance of preferential flow and soil management in vertical transport of a biocontrol strain of Pseudomonas fluorescens in structured field soil. Applied and Environmental Microbiology 62 (1996) 33-40
    • (1996) Applied and Environmental Microbiology , vol.62 , pp. 33-40
    • Natsch, A.1    Keel, C.2    Troxler, J.3    Zala, M.4    von Albertini, N.5    Défago, G.6
  • 29
    • 2342584169 scopus 로고    scopus 로고
    • Rhizosphere colonization of hexaploid wheat by Pseudomonas fluorescens strains Q8r1-96 and Q2-87 is cultivar-variable and associated with changes in gross root morphology
    • Okubara P.A., Kornoely J.P., and Landa B.B. Rhizosphere colonization of hexaploid wheat by Pseudomonas fluorescens strains Q8r1-96 and Q2-87 is cultivar-variable and associated with changes in gross root morphology. Biological Control 30 (2004) 392-403
    • (2004) Biological Control , vol.30 , pp. 392-403
    • Okubara, P.A.1    Kornoely, J.P.2    Landa, B.B.3
  • 30
    • 0036130412 scopus 로고    scopus 로고
    • Microbial and chemical properties of soil associated with macropores at different depths in a red-duplex soil in NSW Australia
    • Pankhurst C.E., Pierret A., Hawke B.G., and Kirby J.M. Microbial and chemical properties of soil associated with macropores at different depths in a red-duplex soil in NSW Australia. Plant and Soil 238 (2002) 11-20
    • (2002) Plant and Soil , vol.238 , pp. 11-20
    • Pankhurst, C.E.1    Pierret, A.2    Hawke, B.G.3    Kirby, J.M.4
  • 32
    • 3142720743 scopus 로고    scopus 로고
    • Frequency and biodiversity of 2,4-diacetylphloroglucinol-producing rhizobacteria are differentially affected by the genotype of two maize inbred lines and their hybrid
    • Picard C., Frascaroli E., and Bosco M. Frequency and biodiversity of 2,4-diacetylphloroglucinol-producing rhizobacteria are differentially affected by the genotype of two maize inbred lines and their hybrid. FEMS Microbiology Ecology 49 (2004) 207-215
    • (2004) FEMS Microbiology Ecology , vol.49 , pp. 207-215
    • Picard, C.1    Frascaroli, E.2    Bosco, M.3
  • 34
    • 0035059326 scopus 로고    scopus 로고
    • Polymorphism of the polyketide synthase gene phlD in biocontrol fluorescent pseudomonads producing 2,4-diacetylphloroglucinol and comparison of phlD with plant polyketide synthases
    • Ramette A., Moënne-Loccoz Y., and Défago G. Polymorphism of the polyketide synthase gene phlD in biocontrol fluorescent pseudomonads producing 2,4-diacetylphloroglucinol and comparison of phlD with plant polyketide synthases. Molecular Plant-Microbe Interactions 14 (2001) 639-652
    • (2001) Molecular Plant-Microbe Interactions , vol.14 , pp. 639-652
    • Ramette, A.1    Moënne-Loccoz, Y.2    Défago, G.3
  • 35
    • 0037572054 scopus 로고    scopus 로고
    • Phylogeny of HCN synthase-encoding hcnBC genes in biocontrol fluorescent pseudomonads and its relationship with host plant species and HCN synthesis ability
    • Ramette A., Frapolli M., and Défago G. Phylogeny of HCN synthase-encoding hcnBC genes in biocontrol fluorescent pseudomonads and its relationship with host plant species and HCN synthesis ability. Molecular Plant-Microbe Interactions 16 (2003) 525-535
    • (2003) Molecular Plant-Microbe Interactions , vol.16 , pp. 525-535
    • Ramette, A.1    Frapolli, M.2    Défago, G.3
  • 36
    • 33644958193 scopus 로고    scopus 로고
    • Genetic diversity and biocontrol potential of fluorescent pseudomonads producing phloroglucinols and hydrogen cyanide from Swiss soils naturally suppressive or conducive to Thielaviopsis basicola-mediated black root rot of tobacco
    • Ramette A., Moënne-Loccoz Y., and Défago G. Genetic diversity and biocontrol potential of fluorescent pseudomonads producing phloroglucinols and hydrogen cyanide from Swiss soils naturally suppressive or conducive to Thielaviopsis basicola-mediated black root rot of tobacco. FEMS Microbiology Ecology 55 (2006) 369-381
    • (2006) FEMS Microbiology Ecology , vol.55 , pp. 369-381
    • Ramette, A.1    Moënne-Loccoz, Y.2    Défago, G.3
  • 37
    • 33846933991 scopus 로고    scopus 로고
    • Is the ability of biocontrol fluorescent pseudomonads to produce the antifungal metabolite 2,4-diacetylphloroglucinol really synonymous with higher plant protection?
    • Rezzonico F., Zala M., Keel C., Duffy B., Moënne-Loccoz Y., and Défago G. Is the ability of biocontrol fluorescent pseudomonads to produce the antifungal metabolite 2,4-diacetylphloroglucinol really synonymous with higher plant protection?. New Phytologist 173 (2007) 861-872
    • (2007) New Phytologist , vol.173 , pp. 861-872
    • Rezzonico, F.1    Zala, M.2    Keel, C.3    Duffy, B.4    Moënne-Loccoz, Y.5    Défago, G.6
  • 40
  • 42
    • 34250745953 scopus 로고    scopus 로고
    • PCR amplification of hydrogen cyanide biosynthetic locus hcnAB in Pseudomonas spp
    • Svercel M., Duffy B., and Défago G. PCR amplification of hydrogen cyanide biosynthetic locus hcnAB in Pseudomonas spp. Journal of Microbiological Methods 70 (2007) 209-213
    • (2007) Journal of Microbiological Methods , vol.70 , pp. 209-213
    • Svercel, M.1    Duffy, B.2    Défago, G.3
  • 43
    • 61649119278 scopus 로고    scopus 로고
    • Effect of long-term vineyard monoculture on rhizosphere populations of pseudomonads carrying the antimicrobial biosynthetic genes phlD and/or hcnAB
    • Svercel M., Christen D., Moënne-Loccoz Y., Duffy B., and Défago G. Effect of long-term vineyard monoculture on rhizosphere populations of pseudomonads carrying the antimicrobial biosynthetic genes phlD and/or hcnAB. FEMS Microbiology Ecology 68 (2009) 25-36
    • (2009) FEMS Microbiology Ecology , vol.68 , pp. 25-36
    • Svercel, M.1    Christen, D.2    Moënne-Loccoz, Y.3    Duffy, B.4    Défago, G.5
  • 45
    • 0032565052 scopus 로고    scopus 로고
    • Transport of a biocontrol Pseudomonas fluorescens through 2.5-m deep outdoor lysimeters and survival in the effluent water
    • Troxler J., Zala M., Natsch A., Nievergelt J., Keel C., and Défago G. Transport of a biocontrol Pseudomonas fluorescens through 2.5-m deep outdoor lysimeters and survival in the effluent water. Soil Biology & Biochemistry 30 (1998) 621-631
    • (1998) Soil Biology & Biochemistry , vol.30 , pp. 621-631
    • Troxler, J.1    Zala, M.2    Natsch, A.3    Nievergelt, J.4    Keel, C.5    Défago, G.6
  • 46
    • 0027036276 scopus 로고
    • Microbial biomass responses to seasonal change and imposed drying regimes at increasing depth of undisturbed topsoil profiles
    • Van Gestel M., Ladd J., and Amato M. Microbial biomass responses to seasonal change and imposed drying regimes at increasing depth of undisturbed topsoil profiles. Soil Biology & Biochemistry 24 (1992) 103-111
    • (1992) Soil Biology & Biochemistry , vol.24 , pp. 103-111
    • Van Gestel, M.1    Ladd, J.2    Amato, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.