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Volumn 40, Issue 6, 2008, Pages 1330-1340

Soil morphology, depth and grapevine root frequency influence microbial communities in a Pinot noir vineyard

Author keywords

Carbon availability; Fungi; Grapevine; Microbial community; PLFA; Roots; Soil resources; Vineyard

Indexed keywords

AGRICULTURE; BACTERIA; BIODIVERSITY; BIOMARKERS; ESTERS; FUNGI; MORPHOLOGY; PHOSPHOLIPIDS;

EID: 43849107934     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2007.04.031     Document Type: Article
Times cited : (55)

References (63)
  • 1
    • 0028993958 scopus 로고
    • Microbial community structure and pH response in relation to soil organic matter quality in wood-ash fertilized, clear-cut or burned coniferous forest soils
    • Bååth E., Frostegård A., Pennanen T., and Fritze H. Microbial community structure and pH response in relation to soil organic matter quality in wood-ash fertilized, clear-cut or burned coniferous forest soils. Soil Biology & Biochemistry 27 (1995) 229-240
    • (1995) Soil Biology & Biochemistry , vol.27 , pp. 229-240
    • Bååth, E.1    Frostegård, A.2    Pennanen, T.3    Fritze, H.4
  • 5
    • 0031947934 scopus 로고    scopus 로고
    • Impacts of carbon and flooding on soil microbial communities: phospholipid fatty acid profiles and substrate utilization patterns
    • Bossio D.A., and Scow K.M. Impacts of carbon and flooding on soil microbial communities: phospholipid fatty acid profiles and substrate utilization patterns. Microbial Ecology 35 (1998) 265-278
    • (1998) Microbial Ecology , vol.35 , pp. 265-278
    • Bossio, D.A.1    Scow, K.M.2
  • 6
    • 0031864898 scopus 로고    scopus 로고
    • Determinants of soil microbial communities: effects of agricultural management, season, and soil type on phospholipid fatty acid profiles
    • Bossio D.A., Scow K.M., Gunapala N., and Graham K.J. Determinants of soil microbial communities: effects of agricultural management, season, and soil type on phospholipid fatty acid profiles. Microbial Ecology 36 (1998) 1-12
    • (1998) Microbial Ecology , vol.36 , pp. 1-12
    • Bossio, D.A.1    Scow, K.M.2    Gunapala, N.3    Graham, K.J.4
  • 7
    • 0034898780 scopus 로고    scopus 로고
    • The structure of microbial communities in soil and the lasting impact of cultivation
    • Buckley D.H., and Schmidt T.M. The structure of microbial communities in soil and the lasting impact of cultivation. Microbial Ecology 42 (2001) 11-21
    • (2001) Microbial Ecology , vol.42 , pp. 11-21
    • Buckley, D.H.1    Schmidt, T.M.2
  • 9
    • 13844257500 scopus 로고    scopus 로고
    • Soil water content and organic carbon availability are major determinants of soil microbial community composition
    • Drenovsky R.E., Vo D., Graham K.J., and Scow K.M. Soil water content and organic carbon availability are major determinants of soil microbial community composition. Microbial Ecology 48 (2004) 424-430
    • (2004) Microbial Ecology , vol.48 , pp. 424-430
    • Drenovsky, R.E.1    Vo, D.2    Graham, K.J.3    Scow, K.M.4
  • 10
    • 43849090486 scopus 로고    scopus 로고
    • Drenovsky, R.E., Edwards, M.P., Gardner, L.A., Scow, K.M., Maroney, A.L., Loveless, L.K., 2005. Comparison of soil microbial communities in Pinot Noir vineyards in Anderson, Carneros, and Russian River Appellations. In: Christensen, L.P., Smart, D.R. (Eds.), Proceedings of the Soil Environment and Vine Mineral Nutrition Symposium. pp. 39-47.
    • Drenovsky, R.E., Edwards, M.P., Gardner, L.A., Scow, K.M., Maroney, A.L., Loveless, L.K., 2005. Comparison of soil microbial communities in Pinot Noir vineyards in Anderson, Carneros, and Russian River Appellations. In: Christensen, L.P., Smart, D.R. (Eds.), Proceedings of the Soil Environment and Vine Mineral Nutrition Symposium. pp. 39-47.
  • 11
    • 0031902077 scopus 로고    scopus 로고
    • Monitoring impact of a pesticide treatment on bacterial soil communities by metabolic and genetic fingerprinting in addition to conventional testing procedures
    • Engelen B., Meinken K., Von Wintzingerode F., Heuer H., Malkomes H.-P., and Backhaus H. Monitoring impact of a pesticide treatment on bacterial soil communities by metabolic and genetic fingerprinting in addition to conventional testing procedures. Applied & Environmental Microbiology 64 (1998) 2814-2821
    • (1998) Applied & Environmental Microbiology , vol.64 , pp. 2814-2821
    • Engelen, B.1    Meinken, K.2    Von Wintzingerode, F.3    Heuer, H.4    Malkomes, H.-P.5    Backhaus, H.6
  • 12
    • 0001808554 scopus 로고
    • Microbial distribution in soil
    • Megusar F., and Gantar M. (Eds), Slovene Society for Microbiology, Ljubljana
    • Federle T.W. Microbial distribution in soil. In: Megusar F., and Gantar M. (Eds). Perspectives in Microbial Ecology (1986), Slovene Society for Microbiology, Ljubljana 493-498
    • (1986) Perspectives in Microbial Ecology , pp. 493-498
    • Federle, T.W.1
  • 14
    • 0037227464 scopus 로고    scopus 로고
    • Variations in microbial community composition through two soil depth profiles
    • Fierer N., Schimel J.P., and Holden P.A. Variations in microbial community composition through two soil depth profiles. Soil Biology & Biochemistry 35 (2003) 167-176
    • (2003) Soil Biology & Biochemistry , vol.35 , pp. 167-176
    • Fierer, N.1    Schimel, J.P.2    Holden, P.A.3
  • 15
    • 0002625418 scopus 로고
    • Quantitative description of microbial communities using lipid analysis
    • Kemp P.F., Sherr B.F., Sherr E.B., and Cole J.J. (Eds), Lewis Publishers, Boca Raton
    • Findlay R.H., and Dobbs F.C. Quantitative description of microbial communities using lipid analysis. In: Kemp P.F., Sherr B.F., Sherr E.B., and Cole J.J. (Eds). Handbook of methods in aquatic microbial ecology (1993), Lewis Publishers, Boca Raton 271-284
    • (1993) Handbook of methods in aquatic microbial ecology , pp. 271-284
    • Findlay, R.H.1    Dobbs, F.C.2
  • 16
    • 0033033017 scopus 로고    scopus 로고
    • Bacterial and fungal abundance and biomass in conventional and no-tillage agroecosystems along two climatic gradients
    • Frey S.D., Elliott E.T., and Paustian K. Bacterial and fungal abundance and biomass in conventional and no-tillage agroecosystems along two climatic gradients. Soil Biology & Biochemistry 31 (1999) 573-585
    • (1999) Soil Biology & Biochemistry , vol.31 , pp. 573-585
    • Frey, S.D.1    Elliott, E.T.2    Paustian, K.3
  • 17
    • 0033670979 scopus 로고    scopus 로고
    • Distribution of microbial biomass and phospholipid fatty acids in Podzol profiles under coniferous forest
    • Fritze H., Pietikainen J., and Pennanen T. Distribution of microbial biomass and phospholipid fatty acids in Podzol profiles under coniferous forest. European Journal of Soil Science 51 (2000) 565-573
    • (2000) European Journal of Soil Science , vol.51 , pp. 565-573
    • Fritze, H.1    Pietikainen, J.2    Pennanen, T.3
  • 18
    • 0027797246 scopus 로고
    • Shifts in the structure of soil microbial communities in limed forests as revealed by phospholipid fatty-acid analysis
    • Frostegård A., Bååth E., and Tunlid A. Shifts in the structure of soil microbial communities in limed forests as revealed by phospholipid fatty-acid analysis. Soil Biology and Biochemistry 25 (1993) 723-730
    • (1993) Soil Biology and Biochemistry , vol.25 , pp. 723-730
    • Frostegård, A.1    Bååth, E.2    Tunlid, A.3
  • 21
    • 0032809736 scopus 로고    scopus 로고
    • Relationship between root biomass and soil organic matter pools in the shortgrass steppe of eastern Colorado
    • Gill R., Burke I.C., Milchunas D.G., and Lauenroth W.K. Relationship between root biomass and soil organic matter pools in the shortgrass steppe of eastern Colorado. Ecosystems 2 (1999) 226-236
    • (1999) Ecosystems , vol.2 , pp. 226-236
    • Gill, R.1    Burke, I.C.2    Milchunas, D.G.3    Lauenroth, W.K.4
  • 24
    • 0022505895 scopus 로고
    • Phospholipid ester-linked fatty-acid profile changes during nutrient deprivation of vibrio-cholerae-increases in the trans cis ratio and proportions of cyclopropyl fatty-acids
    • Guckert J.B., Hood M.A., and White D.C. Phospholipid ester-linked fatty-acid profile changes during nutrient deprivation of vibrio-cholerae-increases in the trans cis ratio and proportions of cyclopropyl fatty-acids. Applied and Environmental Microbiology 52 (1986) 794-801
    • (1986) Applied and Environmental Microbiology , vol.52 , pp. 794-801
    • Guckert, J.B.1    Hood, M.A.2    White, D.C.3
  • 28
    • 16344383908 scopus 로고    scopus 로고
    • Effects of cover crops on grapevines, yield, juice composition, soil microbial ecology, and gopher activity
    • Ingels C.A., Scow K.M., Whisson D.A., and Drenovsky R.E. Effects of cover crops on grapevines, yield, juice composition, soil microbial ecology, and gopher activity. American Journal of Enology and Viticulture 56 (2005) 19-29
    • (2005) American Journal of Enology and Viticulture , vol.56 , pp. 19-29
    • Ingels, C.A.1    Scow, K.M.2    Whisson, D.A.3    Drenovsky, R.E.4
  • 30
    • 0038138132 scopus 로고    scopus 로고
    • Responses of soil microbial processes and community structure to tillage events and implications for soil quality
    • Jackson L.E., Calderón F.J., Steenwerth K.L., Scow K.M., and Rolston D.E. Responses of soil microbial processes and community structure to tillage events and implications for soil quality. Geoderma 114 (2003) 305-317
    • (2003) Geoderma , vol.114 , pp. 305-317
    • Jackson, L.E.1    Calderón, F.J.2    Steenwerth, K.L.3    Scow, K.M.4    Rolston, D.E.5
  • 31
    • 43849089856 scopus 로고    scopus 로고
    • Kelley, T.R., Hentzen, A., 2001. PLFA and PCR-DGGE analyses of wetland microbial communities. In: Abstracts of the General Meeting of the American Society for Microbiology, 101pp.
    • Kelley, T.R., Hentzen, A., 2001. PLFA and PCR-DGGE analyses of wetland microbial communities. In: Abstracts of the General Meeting of the American Society for Microbiology, 101pp.
  • 32
    • 0028070151 scopus 로고
    • Changes in ester-linked phospholipid fatty acid profiles of subsurface bacteria during starvation and desiccation in a porous medium
    • Kieft T.L., Ringelberg D.B., and White D.C. Changes in ester-linked phospholipid fatty acid profiles of subsurface bacteria during starvation and desiccation in a porous medium. Applied & Environmental Microbiology 60 (1994) 3292-3299
    • (1994) Applied & Environmental Microbiology , vol.60 , pp. 3292-3299
    • Kieft, T.L.1    Ringelberg, D.B.2    White, D.C.3
  • 33
    • 0030613338 scopus 로고    scopus 로고
    • Survival and phospholipid fatty acid profiles of surface and subsurface bacteria in natural sediment microcosms
    • Kieft T.L., Wilch E., O'Connor K., Ringelberg D.B., and White D.C. Survival and phospholipid fatty acid profiles of surface and subsurface bacteria in natural sediment microcosms. Applied & Environmental Microbiology 63 (1997) 1531-1542
    • (1997) Applied & Environmental Microbiology , vol.63 , pp. 1531-1542
    • Kieft, T.L.1    Wilch, E.2    O'Connor, K.3    Ringelberg, D.B.4    White, D.C.5
  • 34
    • 0037628220 scopus 로고    scopus 로고
    • Experimental analysis of the effect of exotic and native plant species on the structure and function of soil microbial communities
    • Kourtev P.S., Ehrenfeld J.G., and Haggblom M. Experimental analysis of the effect of exotic and native plant species on the structure and function of soil microbial communities. Soil Biology & Biochemistry 35 (2003) 895-905
    • (2003) Soil Biology & Biochemistry , vol.35 , pp. 895-905
    • Kourtev, P.S.1    Ehrenfeld, J.G.2    Haggblom, M.3
  • 35
    • 43849095136 scopus 로고    scopus 로고
    • Kroppenstedt, R.M., 1985. Fatty-acid and menaquinone analysis of actinomycetes and related organisms. In: Goodfellow, M., Minnikin, D.E. (Eds.), Meeting of the Society for Applied Bacterial Systematics, Edinburgh, Scotland, July 1983, Academic Press Inc., Orlando, FL, pp. 173-200.
    • Kroppenstedt, R.M., 1985. Fatty-acid and menaquinone analysis of actinomycetes and related organisms. In: Goodfellow, M., Minnikin, D.E. (Eds.), Meeting of the Society for Applied Bacterial Systematics, Edinburgh, Scotland, July 1983, Academic Press Inc., Orlando, FL, pp. 173-200.
  • 36
    • 0032861481 scopus 로고    scopus 로고
    • Rapid response of soil microbial communities from conventional, low input, and organic farming systems to a wet/dry cycle
    • Lundquist E.J., Scow K.M., Jackson L.E., Uesugi S.L., and Johnson C.R. Rapid response of soil microbial communities from conventional, low input, and organic farming systems to a wet/dry cycle. Soil Biology & Biochemistry 31 (1999) 1661-1675
    • (1999) Soil Biology & Biochemistry , vol.31 , pp. 1661-1675
    • Lundquist, E.J.1    Scow, K.M.2    Jackson, L.E.3    Uesugi, S.L.4    Johnson, C.R.5
  • 37
    • 3843058988 scopus 로고    scopus 로고
    • Development of specific rhizosphere bacterial communities in relation to plant species, nutrition and soil type
    • Marschner P., Crowley D., and Yang C.H. Development of specific rhizosphere bacterial communities in relation to plant species, nutrition and soil type. Plant and Soil 261 (2004) 199-208
    • (2004) Plant and Soil , vol.261 , pp. 199-208
    • Marschner, P.1    Crowley, D.2    Yang, C.H.3
  • 38
    • 0035030027 scopus 로고    scopus 로고
    • Landscape-level patterns of microbial community composition and substrate use in upland forest ecosystems
    • Myers R.T., Zak D.R., White D.C., and Peacock A. Landscape-level patterns of microbial community composition and substrate use in upland forest ecosystems. Soil Science Society of America Journal 65 (2001) 359-367
    • (2001) Soil Science Society of America Journal , vol.65 , pp. 359-367
    • Myers, R.T.1    Zak, D.R.2    White, D.C.3    Peacock, A.4
  • 41
    • 0001176869 scopus 로고
    • Gram-positive bacteria
    • Ratledge C., and Wilkinson S.G. (Eds), Academic Press, London
    • O'Leary W.M., and Wilkinson S.G. Gram-positive bacteria. In: Ratledge C., and Wilkinson S.G. (Eds). Microbial Lipids (1988), Academic Press, London 117-201
    • (1988) Microbial Lipids , pp. 117-201
    • O'Leary, W.M.1    Wilkinson, S.G.2
  • 42
    • 0034060379 scopus 로고    scopus 로고
    • Lipid and fatty acid composition of hyphae and spores of arbuscular mycorrhizal fungi at different growth stages
    • Olsson P.A., and Johansen A. Lipid and fatty acid composition of hyphae and spores of arbuscular mycorrhizal fungi at different growth stages. Mycological Research 104 (2000) 429-434
    • (2000) Mycological Research , vol.104 , pp. 429-434
    • Olsson, P.A.1    Johansen, A.2
  • 43
    • 0343554025 scopus 로고    scopus 로고
    • Phosphorus effects on the mycelium and storage structures of an arbuscular mycorrhizal fungus as studied in the soil and roots by analysis of fatty acid signatures
    • Olsson P.A., Bååth E., and Jakobsen I. Phosphorus effects on the mycelium and storage structures of an arbuscular mycorrhizal fungus as studied in the soil and roots by analysis of fatty acid signatures. Applied and Environmental Microbiology 63 (1997) 3531-3538
    • (1997) Applied and Environmental Microbiology , vol.63 , pp. 3531-3538
    • Olsson, P.A.1    Bååth, E.2    Jakobsen, I.3
  • 44
    • 0036130412 scopus 로고    scopus 로고
    • Microbiological and chemical properties of soil associated with macropores at different depths in a red-duplex soil in NSW Australia
    • Pankhurst C.E., Pierret A., Hawke B.G., and Kirby J.M. Microbiological and chemical properties of soil associated with macropores at different depths in a red-duplex soil in NSW Australia. Plant and Soil 238 (2002) 11-20
    • (2002) Plant and Soil , vol.238 , pp. 11-20
    • Pankhurst, C.E.1    Pierret, A.2    Hawke, B.G.3    Kirby, J.M.4
  • 45
    • 43849089277 scopus 로고    scopus 로고
    • Pella, E., 1990. Elemental organic analysis 2. State of the Art. American Laboratory 22, 28pp.
    • Pella, E., 1990. Elemental organic analysis 2. State of the Art. American Laboratory 22, 28pp.
  • 47
    • 0028339682 scopus 로고
    • Effects of sieving, storage, and incubation temperature on the phospholipid fatty acid profile of a soil microbial community
    • Petersen S.O., and Klug M.J. Effects of sieving, storage, and incubation temperature on the phospholipid fatty acid profile of a soil microbial community. Applied & Environmental Microbiology 60 (1994) 2421-2430
    • (1994) Applied & Environmental Microbiology , vol.60 , pp. 2421-2430
    • Petersen, S.O.1    Klug, M.J.2
  • 54
    • 43849105248 scopus 로고    scopus 로고
    • Soil Survey Staff, 1997. Keys to soil taxonomy. Soil Conservation Service-USDA (Ed.), Pocahontas Press, Inc. Blacksburg, VA.
    • Soil Survey Staff, 1997. Keys to soil taxonomy. Soil Conservation Service-USDA (Ed.), Pocahontas Press, Inc. Blacksburg, VA.
  • 55
    • 0036861385 scopus 로고    scopus 로고
    • Soil microbial community composition and land use history in cultivated and grassland ecosystems of coastal California
    • Steenwerth K.L., Jackson L.E., Calderón F.J., Stromberg M.R., and Scow K.M. Soil microbial community composition and land use history in cultivated and grassland ecosystems of coastal California. Soil Biology & Biochemistry 34 (2002) 1599-1611
    • (2002) Soil Biology & Biochemistry , vol.34 , pp. 1599-1611
    • Steenwerth, K.L.1    Jackson, L.E.2    Calderón, F.J.3    Stromberg, M.R.4    Scow, K.M.5
  • 56
    • 0002521330 scopus 로고
    • Ordination
    • Jongman R.H. (Ed), Center for Agricultural Publishing and Documentation, Wageningen, The Netherlands
    • ter Braak C.J.F. Ordination. In: Jongman R.H. (Ed). Data Analysis in Community and Landscape Ecology (1987), Center for Agricultural Publishing and Documentation, Wageningen, The Netherlands 91-169
    • (1987) Data Analysis in Community and Landscape Ecology , pp. 91-169
    • ter Braak, C.J.F.1
  • 57
    • 43849094476 scopus 로고    scopus 로고
    • Thomas, G.W., 1982. Exchangeable cations. In: Klute, A., Page, A.L. (Eds.), Methods of Soil Analysis: Part 2. Chemical and Microbiological Properties. ASA Monograph Number 9, pp. 159-165.
    • Thomas, G.W., 1982. Exchangeable cations. In: Klute, A., Page, A.L. (Eds.), Methods of Soil Analysis: Part 2. Chemical and Microbiological Properties. ASA Monograph Number 9, pp. 159-165.
  • 58
    • 0011943362 scopus 로고
    • pH reading of saturated soil paste
    • US Salinity Lab Staff. Richards L.A. (Ed), US Government Printing Office, Washington, DC
    • US Salinity Lab Staff. pH reading of saturated soil paste. In: Richards L.A. (Ed). Diagnosis and Improvement of Saline and Alkali Soils. USDA Agricultural Handbook 60 (1954), US Government Printing Office, Washington, DC 102
    • (1954) Diagnosis and Improvement of Saline and Alkali Soils. USDA Agricultural Handbook 60 , pp. 102
  • 59
    • 43849101672 scopus 로고    scopus 로고
    • USDA-NASS, 2004. Noncitrus fruits and nuts: Final estimates 1997-2002. Statistical Bulletin Number SB-985 (03). Agricultural Statistics Board. pp. 72, 77.
    • USDA-NASS, 2004. Noncitrus fruits and nuts: Final estimates 1997-2002. Statistical Bulletin Number SB-985 (03). Agricultural Statistics Board. pp. 72, 77.
  • 60
    • 0024739976 scopus 로고
    • Lipid analysis in microbial ecology
    • Vestal R., and White D. Lipid analysis in microbial ecology. Bioscience 39 (1989) 535-541
    • (1989) Bioscience , vol.39 , pp. 535-541
    • Vestal, R.1    White, D.2
  • 61
    • 0030497909 scopus 로고    scopus 로고
    • Quantitative comparisons of in situ microbial diversity by signature biomarker analysis
    • White D.C., Stair J.O., and Ringelberg D.B. Quantitative comparisons of in situ microbial diversity by signature biomarker analysis. Journal of Industrial Microbiology 17 (1996) 185-196
    • (1996) Journal of Industrial Microbiology , vol.17 , pp. 185-196
    • White, D.C.1    Stair, J.O.2    Ringelberg, D.B.3
  • 62
    • 0030751753 scopus 로고    scopus 로고
    • Phospholipid fatty acid profiles in selected members of soil microbial communities
    • Zelles L. Phospholipid fatty acid profiles in selected members of soil microbial communities. Chemosphere 35 (1997) 275-294
    • (1997) Chemosphere , vol.35 , pp. 275-294
    • Zelles, L.1


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