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Volumn 397, Issue 1, 2010, Pages 145-154

Euprosterna elaeasa virus genome sequence and evolution of the Tetraviridae family: Emergence of bipartite genomes and conservation of the VPg signal with the dsRNA Birnaviridae family

Author keywords

Birnaviridae; Genome sequence; Insect virus; Jelly roll based capsid; Permuted RNA dependent RNA polymerase; Phylogeny; Recombination; Taxonomy; Tetraviridae; VPg

Indexed keywords

AMINO ACID; CAPSID PROTEIN; COMPLEMENTARY DNA; DOUBLE STRANDED RNA; RNA DIRECTED RNA POLYMERASE;

EID: 74249111882     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2009.10.042     Document Type: Article
Times cited : (31)

References (80)
  • 1
    • 0026688634 scopus 로고
    • Sequence and analysis of the capsid protein of Nudaurelia-capensis omega-virus, an insect virus with T = 4 icosahedral symmetry
    • Agrawal D.K., and Johnson J.E. Sequence and analysis of the capsid protein of Nudaurelia-capensis omega-virus, an insect virus with T = 4 icosahedral symmetry. Virology 190 (1992) 806-814
    • (1992) Virology , vol.190 , pp. 806-814
    • Agrawal, D.K.1    Johnson, J.E.2
  • 2
    • 0028906644 scopus 로고
    • Assembly of the T = 4 Nudaurelia capensis omega virus capsid protein, posttranslational cleavage, and specific encapsidation of its messenger-RNA in a baculovirus expression system
    • Agrawal D.K., and Johnson J.E. Assembly of the T = 4 Nudaurelia capensis omega virus capsid protein, posttranslational cleavage, and specific encapsidation of its messenger-RNA in a baculovirus expression system. Virology 207 (1995) 89-97
    • (1995) Virology , vol.207 , pp. 89-97
    • Agrawal, D.K.1    Johnson, J.E.2
  • 3
    • 20544439643 scopus 로고    scopus 로고
    • Virus evolution: fitting lifestyles to a T
    • Ahlquist P. Virus evolution: fitting lifestyles to a T. Curr. Biol. 15 (2005) R465-R467
    • (2005) Curr. Biol. , vol.15
    • Ahlquist, P.1
  • 4
    • 0021963108 scopus 로고
    • Sindbis virus proteins nsP1 and nsP2 contain homology to nonstructural proteins from several RNA plant viruses
    • Ahlquist P., Strauss E.G., Rice C.M., Strauss J.H., Haseloff J., and Zimmern D. Sindbis virus proteins nsP1 and nsP2 contain homology to nonstructural proteins from several RNA plant viruses. J. Virol. 53 (1985) 536-542
    • (1985) J. Virol. , vol.53 , pp. 536-542
    • Ahlquist, P.1    Strauss, E.G.2    Rice, C.M.3    Strauss, J.H.4    Haseloff, J.5    Zimmern, D.6
  • 6
    • 70349311588 scopus 로고    scopus 로고
    • Drosophila A virus is an unusual RNA virus with a T = 3 icosahedral core and permuted RNA-dependent RNA polymerase
    • Ambrose R.L., Lander G.C., Maaty W.S., Bothner B., Johnson J.E., and Johnson K.N. Drosophila A virus is an unusual RNA virus with a T = 3 icosahedral core and permuted RNA-dependent RNA polymerase. J. Gen. Virol. 90 (2009) 2191-2200
    • (2009) J. Gen. Virol. , vol.90 , pp. 2191-2200
    • Ambrose, R.L.1    Lander, G.C.2    Maaty, W.S.3    Bothner, B.4    Johnson, J.E.5    Johnson, K.N.6
  • 8
    • 33646835810 scopus 로고
    • A negative staining method for high resolution electron microscopy of viruses
    • Brenner S., and Horne R.W. A negative staining method for high resolution electron microscopy of viruses. Biochim. Biophys. Acta 34 (1959) 103-110
    • (1959) Biochim. Biophys. Acta , vol.34 , pp. 103-110
    • Brenner, S.1    Horne, R.W.2
  • 9
    • 34447538279 scopus 로고    scopus 로고
    • Viral RNA pseudoknots: versatile motifs in gene expression and replication
    • Brierley I., Pennell S., and Gilbert R.J.C. Viral RNA pseudoknots: versatile motifs in gene expression and replication. Nat. Rev., Microbiol. 5 (2007) 598-610
    • (2007) Nat. Rev., Microbiol. , vol.5 , pp. 598-610
    • Brierley, I.1    Pennell, S.2    Gilbert, R.J.C.3
  • 10
    • 65649120006 scopus 로고    scopus 로고
    • PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots
    • Byun Y., and Han K. PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots. Bioinformatics 25 (2009) 1435-1437
    • (2009) Bioinformatics , vol.25 , pp. 1435-1437
    • Byun, Y.1    Han, K.2
  • 11
    • 0034625320 scopus 로고    scopus 로고
    • Large conformational changes in the maturation of a simple RNA virus, Nudaurelia capensis omega virus (N omega V)
    • Canady M.A., Tihova M., Hanzlik T.N., Johnson J.E., and Yeager M. Large conformational changes in the maturation of a simple RNA virus, Nudaurelia capensis omega virus (N omega V). J. Mol. Biol. 299 (2000) 573-584
    • (2000) J. Mol. Biol. , vol.299 , pp. 573-584
    • Canady, M.A.1    Tihova, M.2    Hanzlik, T.N.3    Johnson, J.E.4    Yeager, M.5
  • 12
    • 0034755358 scopus 로고    scopus 로고
    • C terminus of infectious bursal disease virus major capsid protein VP2 is involved in definition of the T number for capsid assembly
    • Caston J.R., Martinez-Torrecuadrada J.L., Maraver A., Lombardo E., Rodriguez J.F., Casal J.I., and Carrascosa J.L. C terminus of infectious bursal disease virus major capsid protein VP2 is involved in definition of the T number for capsid assembly. J. Virol. 75 (2001) 10815-10828
    • (2001) J. Virol. , vol.75 , pp. 10815-10828
    • Caston, J.R.1    Martinez-Torrecuadrada, J.L.2    Maraver, A.3    Lombardo, E.4    Rodriguez, J.F.5    Casal, J.I.6    Carrascosa, J.L.7
  • 13
    • 0035141279 scopus 로고    scopus 로고
    • Pathology and properties of the tetravirus Helicoverpa armigera stunt virus
    • Christian P., Dorrian S.J., Gordon K.H.J., and Hanzlik T.N. Pathology and properties of the tetravirus Helicoverpa armigera stunt virus. BioControl 20 (2001) 65-75
    • (2001) BioControl , vol.20 , pp. 65-75
    • Christian, P.1    Dorrian, S.J.2    Gordon, K.H.J.3    Hanzlik, T.N.4
  • 15
    • 0021760092 scopus 로고
    • A comprehensive set of sequence programs for the VAX
    • Devereux J., Haeberli P., and Smithies O. A comprehensive set of sequence programs for the VAX. Nucleic Acids Res. 12 (1984) 387-395
    • (1984) Nucleic Acids Res. , vol.12 , pp. 387-395
    • Devereux, J.1    Haeberli, P.2    Smithies, O.3
  • 16
    • 0028899262 scopus 로고
    • Protein-primed RNA synthesis in vitro by the virion-associated RNA polymerase of infectious pancreatic necrosis virus
    • Dobos P. Protein-primed RNA synthesis in vitro by the virion-associated RNA polymerase of infectious pancreatic necrosis virus. Virology 208 (1995) 19-25
    • (1995) Virology , vol.208 , pp. 19-25
    • Dobos, P.1
  • 17
    • 0035005706 scopus 로고    scopus 로고
    • The 'cleavage' activities of foot-and-mouth disease virus 2A site-directed mutants and naturally occurring '2A-like' sequences
    • Donnelly M.L., Hughes L.E., Luke G., Mendoza H., ten Dam E., Gani D., and Ryan M.D. The 'cleavage' activities of foot-and-mouth disease virus 2A site-directed mutants and naturally occurring '2A-like' sequences. J. Gen. Virol. 82 (2001) 1027-1041
    • (2001) J. Gen. Virol. , vol.82 , pp. 1027-1041
    • Donnelly, M.L.1    Hughes, L.E.2    Luke, G.3    Mendoza, H.4    ten Dam, E.5    Gani, D.6    Ryan, M.D.7
  • 19
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond A.J., and Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7 (2007) 214
    • (2007) BMC Evol. Biol. , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 21
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: a multiple sequence alignment method with reduced time and space complexity
    • Edgar R.C. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5 (2004) 113
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1
  • 23
    • 0000122573 scopus 로고
    • PHYLIP-phylogeny interference package (version 3.2)
    • Felsenstein
    • Felsenstein. PHYLIP-phylogeny interference package (version 3.2). Cladistics 5 (1989) 164-166
    • (1989) Cladistics , vol.5 , pp. 164-166
  • 24
    • 0016222110 scopus 로고
    • Structure of Nudaurelia-capensis beta virus-first example of a capsid with icosahedral surface symmetry T = 4
    • Finch J.T., Crowther R.A., Hendry D.A., and Struthers J.K. Structure of Nudaurelia-capensis beta virus-first example of a capsid with icosahedral surface symmetry T = 4. J. Gen. Virol. 24 (1974) 191-200
    • (1974) J. Gen. Virol. , vol.24 , pp. 191-200
    • Finch, J.T.1    Crowther, R.A.2    Hendry, D.A.3    Struthers, J.K.4
  • 26
    • 0038283212 scopus 로고
    • Etude morphologique et biologique d'un lépidoptère défoliateur du palmier à huile en Amérique latine Darna metaleuca, Walker
    • Genty P. Etude morphologique et biologique d'un lépidoptère défoliateur du palmier à huile en Amérique latine Darna metaleuca, Walker. Oléagineux 31 (1976) 99-107
    • (1976) Oléagineux , vol.31 , pp. 99-107
    • Genty, P.1
  • 28
    • 0033564152 scopus 로고    scopus 로고
    • Toward evidence-based medical statistics: 2. The Bayes factor
    • Goodman S.N. Toward evidence-based medical statistics: 2. The Bayes factor. Ann. Intern. Med. 130 (1999) 1005-1013
    • (1999) Ann. Intern. Med. , vol.130 , pp. 1005-1013
    • Goodman, S.N.1
  • 29
    • 0024462161 scopus 로고
    • Viral-proteins containing the purine Ntp-binding sequence pattern
    • Gorbalenya A.E., and Koonin E.V. Viral-proteins containing the purine Ntp-binding sequence pattern. Nucleic Acids Res. 17 (1989) 8413-8440
    • (1989) Nucleic Acids Res. , vol.17 , pp. 8413-8440
    • Gorbalenya, A.E.1    Koonin, E.V.2
  • 31
    • 0002304127 scopus 로고    scopus 로고
    • Tetraviruses
    • Miller L.K., and Ball L.A. (Eds), Plenum Press, London
    • Gordon K.H.J., and Hanzlik T.N. Tetraviruses. In: Miller L.K., and Ball L.A. (Eds). "The insect viruses" (1998), Plenum Press, London 269-299
    • (1998) "The insect viruses" , pp. 269-299
    • Gordon, K.H.J.1    Hanzlik, T.N.2
  • 32
    • 33748742625 scopus 로고    scopus 로고
    • Small RNA viruses of insects: expression in plants and RNA silencing
    • Gordon K.H., and Waterhouse P.M. Small RNA viruses of insects: expression in plants and RNA silencing. Adv. Virus Res. 68 (2006) 459-502
    • (2006) Adv. Virus Res. , vol.68 , pp. 459-502
    • Gordon, K.H.1    Waterhouse, P.M.2
  • 33
    • 0028953231 scopus 로고
    • The larger genomic RNA of Helicoverpa armigera stunt tetravirus encodes the viral RNA polymerase and has a novel 3′-terminal tRNA-like structure
    • Gordon K.H.J., Johnson K.N., and Hanzlik T.N. The larger genomic RNA of Helicoverpa armigera stunt tetravirus encodes the viral RNA polymerase and has a novel 3′-terminal tRNA-like structure. Virology 208 (1995) 84-98
    • (1995) Virology , vol.208 , pp. 84-98
    • Gordon, K.H.J.1    Johnson, K.N.2    Hanzlik, T.N.3
  • 34
    • 0033602698 scopus 로고    scopus 로고
    • Sequence of the genomic RNA of Nudaurelia beta virus (Tetraviridae) defines a novel virus genome organization
    • Gordon K.H.J., Williams M.R., Hendry D.A., and Hanzlik T.N. Sequence of the genomic RNA of Nudaurelia beta virus (Tetraviridae) defines a novel virus genome organization. Virology 258 (1999) 42-53
    • (1999) Virology , vol.258 , pp. 42-53
    • Gordon, K.H.J.1    Williams, M.R.2    Hendry, D.A.3    Hanzlik, T.N.4
  • 36
    • 0002703976 scopus 로고    scopus 로고
    • Tetraviruses (Tetraviridae)
    • Wrigglesworth J. (Ed), Academic Press, New York
    • Hanzlik T.N., and Gordon K.H.J. Tetraviruses (Tetraviridae). In: Wrigglesworth J. (Ed). "The Encyclopedia of Virology" (1998), Academic Press, New York 1764-1772
    • (1998) "The Encyclopedia of Virology" , pp. 1764-1772
    • Hanzlik, T.N.1    Gordon, K.H.J.2
  • 37
    • 0027282648 scopus 로고
    • A novel small RNA virus isolated from the cotton bollworm, Helicoverpa-armigera
    • Hanzlik T.N., Dorrian S.J., Gordon K.H.J., and Christian P.D. A novel small RNA virus isolated from the cotton bollworm, Helicoverpa-armigera. J. Gen. Virol. 74 (1993) 1805-1810
    • (1993) J. Gen. Virol. , vol.74 , pp. 1805-1810
    • Hanzlik, T.N.1    Dorrian, S.J.2    Gordon, K.H.J.3    Christian, P.D.4
  • 38
    • 0028923849 scopus 로고
    • Sequence of RNA2 of the Helicoverpa armigera stunt virus (Tetraviridae) and bacterial expression of its genes
    • Hanzlik T.N., Dorrian S.J., Johnson K.N., Brooks E.M., and Gordon K.H.J. Sequence of RNA2 of the Helicoverpa armigera stunt virus (Tetraviridae) and bacterial expression of its genes. J. Gen. Virol. 76 Pt 4 (1995) 799-811
    • (1995) J. Gen. Virol. , vol.76 , Issue.PART 4 , pp. 799-811
    • Hanzlik, T.N.1    Dorrian, S.J.2    Johnson, K.N.3    Brooks, E.M.4    Gordon, K.H.J.5
  • 41
    • 1242319463 scopus 로고    scopus 로고
    • The refined structure of Nudaurelia capensis omega virus reveals control elements for a T = 4 capsid maturation
    • Helgstrand C., Munshi S., Johnson J.E., and Liljas L. The refined structure of Nudaurelia capensis omega virus reveals control elements for a T = 4 capsid maturation. Virology 318 (2004) 192-203
    • (2004) Virology , vol.318 , pp. 192-203
    • Helgstrand, C.1    Munshi, S.2    Johnson, J.E.3    Liljas, L.4
  • 42
    • 0028043552 scopus 로고
    • Position-based sequence weights
    • Henikoff S., and Henikoff J.G. Position-based sequence weights. J. Mol. Biol. 243 (1994) 574-578
    • (1994) J. Mol. Biol. , vol.243 , pp. 574-578
    • Henikoff, S.1    Henikoff, J.G.2
  • 43
    • 0033824470 scopus 로고    scopus 로고
    • DaliLite workbench for protein structure comparison
    • Holm L., and Park J. DaliLite workbench for protein structure comparison. Bioinformatics 16 (2000) 566-567
    • (2000) Bioinformatics , vol.16 , pp. 566-567
    • Holm, L.1    Park, J.2
  • 44
    • 33846900179 scopus 로고    scopus 로고
    • High sensitivity RNA pseudoknot prediction
    • Huang X.L., and Ali H. High sensitivity RNA pseudoknot prediction. Nucleic Acids Res. 35 (2007) 656-663
    • (2007) Nucleic Acids Res. , vol.35 , pp. 656-663
    • Huang, X.L.1    Ali, H.2
  • 46
    • 0000941157 scopus 로고    scopus 로고
    • Structural studies of nodaviruses and tetraviruses
    • Miller L.K., and Ball L.A. (Eds), Plenum Press, London
    • Johnson J.E., and Reddy V. Structural studies of nodaviruses and tetraviruses. In: Miller L.K., and Ball L.A. (Eds). "The insect viruses" (1998), Plenum Press, London 171-223
    • (1998) "The insect viruses" , pp. 171-223
    • Johnson, J.E.1    Reddy, V.2
  • 47
    • 0033578684 scopus 로고    scopus 로고
    • Protein secondary structure prediction based on position-specific scoring matrices
    • Jones D.T. Protein secondary structure prediction based on position-specific scoring matrices. J. Mol. Biol. 292 (1999) 195-202
    • (1999) J. Mol. Biol. , vol.292 , pp. 195-202
    • Jones, D.T.1
  • 48
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (London) 227 (1970) 680-685
    • (1970) Nature (London) , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 50
    • 0027381917 scopus 로고
    • Mapping the 5′ and 3′ ends of Tetrahymena-thermophila messenger-RNAs using RNA ligase mediated amplification of cDNA ends (RLM-RACE)
    • Liu X.W., and Gorovsky M.A. Mapping the 5′ and 3′ ends of Tetrahymena-thermophila messenger-RNAs using RNA ligase mediated amplification of cDNA ends (RLM-RACE). Nucleic Acids Res. 21 (1993) 4954-4960
    • (1993) Nucleic Acids Res. , vol.21 , pp. 4954-4960
    • Liu, X.W.1    Gorovsky, M.A.2
  • 52
    • 0345020415 scopus 로고    scopus 로고
    • Conversion of VP1 to VPg in cells infected by infectious pancreatic necrosis virus
    • Magyar G., Chung H.K., and Dobos P. Conversion of VP1 to VPg in cells infected by infectious pancreatic necrosis virus. Virology 245 (1998) 142-150
    • (1998) Virology , vol.245 , pp. 142-150
    • Magyar, G.1    Chung, H.K.2    Dobos, P.3
  • 53
    • 85013507661 scopus 로고
    • The Nudaurelia β family of insect viruses
    • Kurstak E. (Ed), M. Dekker Inc., New York
    • Moore N.F. The Nudaurelia β family of insect viruses. In: Kurstak E. (Ed). "Viruses of Invertebrates" (1991), M. Dekker Inc., New York 277-285
    • (1991) "Viruses of Invertebrates" , pp. 277-285
    • Moore, N.F.1
  • 54
    • 0030576341 scopus 로고    scopus 로고
    • The 2.8 angstrom structure of a T = 4 animal virus and its implications for membrane translocation of RNA
    • Munshi S., Liljas L., Cavarelli J., Bomu W., Mckinney B., Reddy V., and Johnson J.E. The 2.8 angstrom structure of a T = 4 animal virus and its implications for membrane translocation of RNA. J. Mol. Biol. 261 (1996) 1-10
    • (1996) J. Mol. Biol. , vol.261 , pp. 1-10
    • Munshi, S.1    Liljas, L.2    Cavarelli, J.3    Bomu, W.4    Mckinney, B.5    Reddy, V.6    Johnson, J.E.7
  • 56
    • 33845275114 scopus 로고    scopus 로고
    • Conformational organization of the 3' untranslated region in the tomato bushy stunt virus genome
    • Na H., Fabian M.R., and White K.A. Conformational organization of the 3' untranslated region in the tomato bushy stunt virus genome. RNA-A Publication of the RNA Society 12 (2006) 2199-2210
    • (2006) RNA-A Publication of the RNA Society , vol.12 , pp. 2199-2210
    • Na, H.1    Fabian, M.R.2    White, K.A.3
  • 58
    • 0025569309 scopus 로고
    • The 3-dimensional structure of frozen-hydrated Nudaurelia-capensis beta-virus, a T = 4 insect virus
    • Olson N.H., Baker T.S., Johnson J.E., and Hendry D.A. The 3-dimensional structure of frozen-hydrated Nudaurelia-capensis beta-virus, a T = 4 insect virus. J. Struct. Biol. 105 (1990) 111-122
    • (1990) J. Struct. Biol. , vol.105 , pp. 111-122
    • Olson, N.H.1    Baker, T.S.2    Johnson, J.E.3    Hendry, D.A.4
  • 59
    • 34250643613 scopus 로고    scopus 로고
    • The structure of a birnavirus polymerase reveals a distinct active site topology
    • Pan J., Vakharia V.N., and Tao Y.J. The structure of a birnavirus polymerase reveals a distinct active site topology. Proc. Natl. Acad. Sci. U.S.A 104 (2007) 7385-7390
    • (2007) Proc. Natl. Acad. Sci. U.S.A , vol.104 , pp. 7385-7390
    • Pan, J.1    Vakharia, V.N.2    Tao, Y.J.3
  • 61
    • 0035155440 scopus 로고    scopus 로고
    • Analysis of the capsid processing strategy of Thosea asigna virus using baculovirus expression of virus-like particles
    • Pringle F.M., Kalmakoff J., and Ward V.K. Analysis of the capsid processing strategy of Thosea asigna virus using baculovirus expression of virus-like particles. J. Gen. Virol. 82 (2001) 259-266
    • (2001) J. Gen. Virol. , vol.82 , pp. 259-266
    • Pringle, F.M.1    Kalmakoff, J.2    Ward, V.K.3
  • 62
    • 0037440765 scopus 로고    scopus 로고
    • Providence virus: a new member of the Tetraviridae that infects cultured insect cells
    • Pringle F.M., Johnson K.N., Goodman C.L., McIntosh A.H., and Ball L.A. Providence virus: a new member of the Tetraviridae that infects cultured insect cells. Virology 306 (2003) 359-370
    • (2003) Virology , vol.306 , pp. 359-370
    • Pringle, F.M.1    Johnson, K.N.2    Goodman, C.L.3    McIntosh, A.H.4    Ball, L.A.5
  • 63
    • 74249087146 scopus 로고    scopus 로고
    • Rambaut, A., Drummond, A.J.,. Tracer v1.4. (http://beast.bio.ed.ac.uk/Tracer). 2007. Ref Type: Computer Program.
    • Rambaut, A., Drummond, A.J.,. Tracer v1.4. (http://beast.bio.ed.ac.uk/Tracer). 2007. Ref Type: Computer Program.
  • 64
    • 0028567952 scopus 로고
    • Influence of codon usage and translation initiation codon context in the Acnpv-based expression system-computer-analysis using homologous and heterologous genes
    • Ranjan A., and Hasnain S.E. Influence of codon usage and translation initiation codon context in the Acnpv-based expression system-computer-analysis using homologous and heterologous genes. Virus Genes 9 (1995) 149-153
    • (1995) Virus Genes , vol.9 , pp. 149-153
    • Ranjan, A.1    Hasnain, S.E.2
  • 65
    • 13244252326 scopus 로고    scopus 로고
    • Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
    • Reeder J., and Giegerich R. Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics. BMC Bioinformatics 5 (2004) 104
    • (2004) BMC Bioinformatics , vol.5 , pp. 104
    • Reeder, J.1    Giegerich, R.2
  • 66
    • 34547564982 scopus 로고    scopus 로고
    • pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows
    • Reeder J., Steffen P., and Giegerich R. pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows. Nucleic Acids Res. 35 (2007) W320-W324
    • (2007) Nucleic Acids Res. , vol.35
    • Reeder, J.1    Steffen, P.2    Giegerich, R.3
  • 67
    • 70350125868 scopus 로고    scopus 로고
    • Permutation of the active site of putative RNA-dependent RNA polymerase in a newly identified species of plant alpha-like virus
    • Sabanadzovic S., Ghanem-Sabanadzovic N.A., and Gorbalenya A.E. Permutation of the active site of putative RNA-dependent RNA polymerase in a newly identified species of plant alpha-like virus. Virology 394 (2009) 1-7
    • (2009) Virology , vol.394 , pp. 1-7
    • Sabanadzovic, S.1    Ghanem-Sabanadzovic, N.A.2    Gorbalenya, A.E.3
  • 68
    • 0037423702 scopus 로고    scopus 로고
    • COMPASS: a tool for comparison of multiple protein alignments with assessment of statistical significance
    • Sadreyev R., and Grishin N.V. COMPASS: a tool for comparison of multiple protein alignments with assessment of statistical significance. J. Mol. Biol. 326 (2003) 317-336
    • (2003) J. Mol. Biol. , vol.326 , pp. 317-336
    • Sadreyev, R.1    Grishin, N.V.2
  • 69
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt H.A., Strimmer K., Vingron M., and von Haeseler A. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18 (2002) 502-504
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 70
    • 0031606858 scopus 로고    scopus 로고
    • The structure and function of nodavirus particles: a paradigm for understanding chemical biology
    • Schneemann A., Reddy V., and Johnson J.E. The structure and function of nodavirus particles: a paradigm for understanding chemical biology. Adv. Virus Res. 50 50 (1998) 381-446
    • (1998) Adv. Virus Res. , vol.50 , Issue.50 , pp. 381-446
    • Schneemann, A.1    Reddy, V.2    Johnson, J.E.3
  • 73
    • 74249102084 scopus 로고    scopus 로고
    • Swofford, D. L. PAUP*. Phylogenetic analysis using parsimony *and other methods, Version 4. 2000. Sunderland, Massachusetts, Sinauer Associates. Ref Type: Computer Program
    • Swofford, D. L. PAUP*. Phylogenetic analysis using parsimony (*and other methods). Version 4. 2000. Sunderland, Massachusetts, Sinauer Associates. Ref Type: Computer Program.
  • 74
    • 13244259151 scopus 로고    scopus 로고
    • Folding and particle assembly are disrupted by single-point mutations near the autocatalytic cleavage site of Nudaurelia capensis omega virus capsid protein
    • Taylor D.J., and Johnson J.E. Folding and particle assembly are disrupted by single-point mutations near the autocatalytic cleavage site of Nudaurelia capensis omega virus capsid protein. Protein Sci. 14 (2005) 401-408
    • (2005) Protein Sci. , vol.14 , pp. 401-408
    • Taylor, D.J.1    Johnson, J.E.2
  • 75
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 76
    • 0035031966 scopus 로고    scopus 로고
    • A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
    • Whelan S., and Goldman N. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol. Biol. Evol. 18 (2001) 691-699
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 691-699
    • Whelan, S.1    Goldman, N.2
  • 77
    • 23144463133 scopus 로고    scopus 로고
    • Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots
    • Xayaphoummine A., Bucher T., and Isambert H. Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots. Nucleic Acids Res. 33 (2005) W605-W610
    • (2005) Nucleic Acids Res. , vol.33
    • Xayaphoummine, A.1    Bucher, T.2    Isambert, H.3
  • 78
    • 1942517944 scopus 로고    scopus 로고
    • Mapping the site of guanylylation on VP1, the protein primer for infectious pancreatic necrosis virus RNA synthesis
    • Xu H.T., Si W.D., and Dobos P. Mapping the site of guanylylation on VP1, the protein primer for infectious pancreatic necrosis virus RNA synthesis. Virology 322 (2004) 199-210
    • (2004) Virology , vol.322 , pp. 199-210
    • Xu, H.T.1    Si, W.D.2    Dobos, P.3
  • 79
    • 14744306947 scopus 로고    scopus 로고
    • Isolation and identification of a new tetravirus from Dendrolimus punctatus larvae collected from Yunnan Province, China
    • Yi F., Zhang J., Yu H., Liu C., Wang J., and Hu Y. Isolation and identification of a new tetravirus from Dendrolimus punctatus larvae collected from Yunnan Province, China. J. Gen. Virol. 86 (2005) 789-796
    • (2005) J. Gen. Virol. , vol.86 , pp. 789-796
    • Yi, F.1    Zhang, J.2    Yu, H.3    Liu, C.4    Wang, J.5    Hu, Y.6
  • 80
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31 (2003) 3406-3415
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.