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Volumn 226, Issue 2, 1996, Pages 191-197

A single nucleotide substitution converts potato spindle tuber viroid (PSTVd) from a noninfectious to an infectious RNA for Nicotiana tabacum

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA VIRUS; TOBACCO; TOMATO; VIROID;

EID: 0030589651     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1996.0646     Document Type: Article
Times cited : (97)

References (42)
  • 1
    • 0028892438 scopus 로고
    • Only one of four possible secondary structures of the central conserved region of potato spindle tuber viroid is a substrate for processing in a potato nuclear extract
    • Baumstark, T., and Resner, D. (1995). Only one of four possible secondary structures of the central conserved region of potato spindle tuber viroid is a substrate for processing in a potato nuclear extract. Nucleic Acids Res. 23, 4246-4254.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 4246-4254
    • Baumstark, T.1    Resner, D.2
  • 2
    • 85030290821 scopus 로고    scopus 로고
    • Viroid processing: Pathway from cleavage to ligation is driven by a switch from a tetraloop to a loop E conformation
    • Jerusalem 11-16 August 1996, Abstract W09-5
    • Baumstark, T., and Riesner, D. (1996). Viroid processing: Pathway from cleavage to ligation is driven by a switch from a tetraloop to a loop E conformation. Abstracts of the Xth International Congress of Virology, Jerusalem 11-16 August 1996, Abstract W09-5, p. 21.
    • (1996) Xth International Congress of Virology , pp. 21
    • Baumstark, T.1    Riesner, D.2
  • 3
    • 0003827689 scopus 로고
    • Ultraviolet light-induced crosslinking reveals a unique region of local tertiary structure in potato spindle tuber viroid and HeLa 5S RNA
    • Branch, A. D., Benenfeld, B. J., and Robertson, H. D. (1985). Ultraviolet light-induced crosslinking reveals a unique region of local tertiary structure in potato spindle tuber viroid and HeLa 5S RNA. Proc. Natl. Acad. Sci. USA 82, 6590-6594.
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 6590-6594
    • Branch, A.D.1    Benenfeld, B.J.2    Robertson, H.D.3
  • 4
    • 0028036218 scopus 로고
    • A photo-cross-linkable tertiary structure motif found in functionally distinct RNA molecules is essential for catalytic function of the hairpin ribozyme
    • Butcher, S. E., and Burke, J. M. (1994). A photo-cross-linkable tertiary structure motif found in functionally distinct RNA molecules is essential for catalytic function of the hairpin ribozyme. Biochemistry 33, 992-999.
    • (1994) Biochemistry , vol.33 , pp. 992-999
    • Butcher, S.E.1    Burke, J.M.2
  • 5
    • 0015108128 scopus 로고
    • Potato spindle tuber "virus" IV. A replicating, low molecular weight RNA
    • Diener, T. O. (1971). Potato spindle tuber "virus" IV. A replicating, low molecular weight RNA. Virology 45, 411-428.
    • (1971) Virology , vol.45 , pp. 411-428
    • Diener, T.O.1
  • 6
    • 0019495621 scopus 로고
    • Sequence heterogeneity in satellite tobacco necrosis virus RNA
    • Donis-Keller, H., Browning, K. S., and Clark, J. M. (1981). Sequence heterogeneity in satellite tobacco necrosis virus RNA. Virology 110, 43-54.
    • (1981) Virology , vol.110 , pp. 43-54
    • Donis-Keller, H.1    Browning, K.S.2    Clark, J.M.3
  • 7
    • 0011312694 scopus 로고
    • Tomato as a test plant for detecting mild strains of potato spindle tuber virus
    • Fernow, K. H. (1967). Tomato as a test plant for detecting mild strains of potato spindle tuber virus. Phytopathology 57, 1347-1352.
    • (1967) Phytopathology , vol.57 , pp. 1347-1352
    • Fernow, K.H.1
  • 8
    • 0030580111 scopus 로고    scopus 로고
    • Secondary structure probing of potato spindle tuber viroid (PSTVd) and sequence comparison with other small pathogenic RNA replicons provides evidence for central non-canonical base-pairs, large A-rich loops, and a terminal branch
    • Gast, F.-U., Kempe, D., Spieker R. L., and Sänger, H. L. (1996). Secondary structure probing of potato spindle tuber viroid (PSTVd) and sequence comparison with other small pathogenic RNA replicons provides evidence for central non-canonical base-pairs, large A-rich loops, and a terminal branch. J Mol. Biol. 262, 652-670.
    • (1996) J Mol. Biol. , vol.262 , pp. 652-670
    • Gast, F.-U.1    Kempe, D.2    Spieker, R.L.3    Sänger, H.L.4
  • 9
    • 0026409920 scopus 로고
    • RNA binding properties of the coat protein from bacteriophage GA
    • Gott, J. M., Wilhelm, L. J., and Uhlenbeck, O. C. (1991). RNA binding properties of the coat protein from bacteriophage GA. Nucleic Acids Res. 19, 6499-6503.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 6499-6503
    • Gott, J.M.1    Wilhelm, L.J.2    Uhlenbeck, O.C.3
  • 10
    • 0017821271 scopus 로고
    • Nucleotide sequence and secondary structure of potato spindle tuber viroid
    • Gross, H. J., Domdey, H., Lossow, C., Jank, P., Raba, M., Alberty, H., and Sänger, H. L. (1978). Nucleotide sequence and secondary structure of potato spindle tuber viroid. Nature 273, 203-208.
    • (1978) Nature , vol.273 , pp. 203-208
    • Gross, H.J.1    Domdey, H.2    Lossow, C.3    Jank, P.4    Raba, M.5    Alberty, H.6    Sänger, H.L.7
  • 11
    • 0023212286 scopus 로고
    • Mutational analysis of potato spindle tuber viroid reveals complex relationships between structure and infectivity
    • Hammond, R. W., and Owens, R. A. (1987). Mutational analysis of potato spindle tuber viroid reveals complex relationships between structure and infectivity. Proc. Natl. Acad. Sci. USA 84, 3967-3971.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 3967-3971
    • Hammond, R.W.1    Owens, R.A.2
  • 12
    • 0026550732 scopus 로고
    • Analysis of the virulence modulating region of potato spindle tuber viroid (PSTVd) by site-directed mutagenesis
    • Hammond, R. W. (1992). Analysis of the virulence modulating region of potato spindle tuber viroid (PSTVd) by site-directed mutagenesis. Virology 187, 654-662.
    • (1992) Virology , vol.187 , pp. 654-662
    • Hammond, R.W.1
  • 13
    • 0028229365 scopus 로고
    • Agrobacterium-mediated inoculation of PSTVd cDNA onto tomato reveals the biological effect of apparently lethal mutations
    • Hammond, R. W. (1994). Agrobacterium-mediated inoculation of PSTVd cDNA onto tomato reveals the biological effect of apparently lethal mutations. Virology 201, 36-45.
    • (1994) Virology , vol.201 , pp. 36-45
    • Hammond, R.W.1
  • 14
    • 0026857950 scopus 로고
    • Sequence analysis of five new field isolates demonstrates that the chain length of potato spindle tuber viroid (PSTVd) is not strictly conserved but as variable as in other viroids
    • Herold, T., Haas, B., Singh, R. P., Boucher, A., and Sanger, H. L. (1992). Sequence analysis of five new field isolates demonstrates that the chain length of potato spindle tuber viroid (PSTVd) is not strictly conserved but as variable as in other viroids. Plant Mol. Biol. 19, 329-333.
    • (1992) Plant Mol. Biol. , vol.19 , pp. 329-333
    • Herold, T.1    Haas, B.2    Singh, R.P.3    Boucher, A.4    Sanger, H.L.5
  • 15
    • 0029997096 scopus 로고    scopus 로고
    • Role of the variable domain in modulating potato spindle tuber viroid replication
    • Hu, Y., Feldstein, P. A., Bottino, P. J., and Owens, R. A. (1996). Role of the variable domain in modulating potato spindle tuber viroid replication. Virology 219, 45-56.
    • (1996) Virology , vol.219 , pp. 45-56
    • Hu, Y.1    Feldstein, P.A.2    Bottino, P.J.3    Owens, R.A.4
  • 16
    • 0025268064 scopus 로고
    • Serial passages of infectious transcripts of a cucumber mosaic virus satellite RNA clone result in sequence heterogeneity
    • Kurath, G., and Palukaitis, P. (1990). Serial passages of infectious transcripts of a cucumber mosaic virus satellite RNA clone result in sequence heterogeneity. Virology 176, 8-15.
    • (1990) Virology , vol.176 , pp. 8-15
    • Kurath, G.1    Palukaitis, P.2
  • 17
    • 0026534193 scopus 로고
    • RNA progeny of an infectious two-base deletion cDNA mutant of potato spindle tuber viroid (PSTV) acquire two nucleotides in planta
    • Lakshman, K. D., and Tavantzis, S. M. (1992). RNA progeny of an infectious two-base deletion cDNA mutant of potato spindle tuber viroid (PSTV) acquire two nucleotides in planta. Virology 187, 565-572.
    • (1992) Virology , vol.187 , pp. 565-572
    • Lakshman, K.D.1    Tavantzis, S.M.2
  • 18
    • 0027345787 scopus 로고
    • Primary and secondary structure of a 360 nucleotide isolate of potato spindle tuber viroid
    • Lakshman, K. D., and Tavantzis, S. M. (1993). Primary and secondary structure of a 360 nucleotide isolate of potato spindle tuber viroid. Arch. Virol. 128, 319-331.
    • (1993) Arch. Virol. , vol.128 , pp. 319-331
    • Lakshman, K.D.1    Tavantzis, S.M.2
  • 19
    • 0023654956 scopus 로고
    • Improved method for the isolation of RNA from plant tissues
    • Logemann, J., Schell, J., and Willmitzer, L. (1987). Improved method for the isolation of RNA from plant tissues. Anal. Biochem. 163, 16-20.
    • (1987) Anal. Biochem. , vol.163 , pp. 16-20
    • Logemann, J.1    Schell, J.2    Willmitzer, L.3
  • 20
    • 0025981740 scopus 로고
    • Formation of a thermodynamically metastable structure containing hairpin II is critical for infectivity of potato spindle tuber viroid RNA
    • Loss, P., Schmitz, M., Steger, G., and Riesner, D. (1991). Formation of a thermodynamically metastable structure containing hairpin II is critical for infectivity of potato spindle tuber viroid RNA. EMBO J. 10, 719-727.
    • (1991) EMBO J. , vol.10 , pp. 719-727
    • Loss, P.1    Schmitz, M.2    Steger, G.3    Riesner, D.4
  • 21
    • 84982358134 scopus 로고
    • A revised medium for rapid growth and bioassays with tobacco tissue culture
    • Murashige, T., and Skoog, F. (1962). A revised medium for rapid growth and bioassays with tobacco tissue culture. Physiol. Plant. 15, 473-497.
    • (1962) Physiol. Plant. , vol.15 , pp. 473-497
    • Murashige, T.1    Skoog, F.2
  • 22
    • 0001563602 scopus 로고
    • Site-specific mutagenesis of potato spindle tuber viroid cDNA alterations within premelting region 2 that abolish infectivity
    • Owens, R. A., Hammond, R. W., Gardner, R. C., Kiefer, M. C., Thompson, S. M., and Cress, D. E. (1986). Site-specific mutagenesis of potato spindle tuber viroid cDNA alterations within premelting region 2 that abolish infectivity. Plant Mol. Biol. 6, 179-192.
    • (1986) Plant Mol. Biol. , vol.6 , pp. 179-192
    • Owens, R.A.1    Hammond, R.W.2    Gardner, R.C.3    Kiefer, M.C.4    Thompson, S.M.5    Cress, D.E.6
  • 23
    • 0026059364 scopus 로고
    • Effects of random mutagenesis upon potato spindle tuber viroid replication and symptom expression
    • Owens, R. A., Thompson, S. M., and Steger, G. (1991). Effects of random mutagenesis upon potato spindle tuber viroid replication and symptom expression. Virology 185, 18-31.
    • (1991) Virology , vol.185 , pp. 18-31
    • Owens, R.A.1    Thompson, S.M.2    Steger, G.3
  • 24
    • 0011264416 scopus 로고
    • A new mild strain of potato spindle tuber viroid isolated from wild Solanum spp. in India
    • Owens, R. A., Khurana, S. M. P., Smith, D. R., Singh, M. N., and Garg, I. D. (1992). A new mild strain of potato spindle tuber viroid isolated from wild Solanum spp. in India. Plant Dis. 76, 527-529.
    • (1992) Plant Dis. , vol.76 , pp. 527-529
    • Owens, R.A.1    Khurana, S.M.P.2    Smith, D.R.3    Singh, M.N.4    Garg, I.D.5
  • 25
    • 0029058608 scopus 로고
    • Suppression of potato spindle tuber viroid replication and symptom expression by mutations which stabilize the pathogenicity region
    • Owens, R. A., Chen, W., Hu, Y., and Hsu, Y.-H. (1995). Suppression of potato spindle tuber viroid replication and symptom expression by mutations which stabilize the pathogenicity region. Virology 208, 554-564.
    • (1995) Virology , vol.208 , pp. 554-564
    • Owens, R.A.1    Chen, W.2    Hu, Y.3    Hsu, Y.-H.4
  • 26
    • 0025488127 scopus 로고
    • A new strain of potato spindle tuber viroid (PSTVd-N) exhibits major sequence differences as compared to all other PSTVd strains sequenced so far
    • Puchta, H., Herold, T., Verhoeven, K., Roenhorst, A., Ramm, K., Schmidt-Puchta, W., and Sänger, H. L. (1990). A new strain of potato spindle tuber viroid (PSTVd-N) exhibits major sequence differences as compared to all other PSTVd strains sequenced so far. Plant Mol. Biol. 15, 509-511.
    • (1990) Plant Mol. Biol. , vol.15 , pp. 509-511
    • Puchta, H.1    Herold, T.2    Verhoeven, K.3    Roenhorst, A.4    Ramm, K.5    Schmidt-Puchta, W.6    Sänger, H.L.7
  • 27
    • 0027215283 scopus 로고
    • Multiple pathways of reversion in viroids for conservation of structural elements
    • Qu, F., Heinrich, C., Loss, P., Steger, G., Tien, P., and Riesner, D. (1993). Multiple pathways of reversion in viroids for conservation of structural elements. EMBO J. 12, 2129-2139.
    • (1993) EMBO J. , vol.12 , pp. 2129-2139
    • Qu, F.1    Heinrich, C.2    Loss, P.3    Steger, G.4    Tien, P.5    Riesner, D.6
  • 28
    • 0002262619 scopus 로고
    • Structure of viroids and their replication intermediates: Are thermodynamic domains also functional domains?
    • Riesner, D. (1990). Structure of viroids and their replication intermediates: Are thermodynamic domains also functional domains? Semin. Virol. 1, 83-99.
    • (1990) Semin. Virol. , vol.1 , pp. 83-99
    • Riesner, D.1
  • 30
    • 0017180370 scopus 로고
    • Viroids are single-stranded covalently closed circular RNA molecules existing as a highly base-paired structure
    • Sanger, H. L., Klotz, G., Riesner, D., Gross, H. J., and Kleinschmidt, A. K. (1976). Viroids are single-stranded covalently closed circular RNA molecules existing as a highly base-paired structure. Proc. Natl. Acad. Sci. USA 73, 3852-3856.
    • (1976) Proc. Natl. Acad. Sci. USA , vol.73 , pp. 3852-3856
    • Sanger, H.L.1    Klotz, G.2    Riesner, D.3    Gross, H.J.4    Kleinschmidt, A.K.5
  • 31
    • 0001765396 scopus 로고
    • Viroid replication
    • (T. O. Diener, Ed.). Plenum Press, New York
    • Sänger, H. L. (1987). Viroid replication. In "The Viroids" (T. O. Diener, Ed.), pp. 117-166. Plenum Press, New York.
    • (1987) The Viroids , pp. 117-166
    • Sänger, H.L.1
  • 32
    • 0001668440 scopus 로고
    • Involvement of nuclear DNA-dependent RNA polymerases in potato spindle tuber viroid replication: A reevaluation
    • Schindler, I.-M., and Mühlbach H.-P. (1992). Involvement of nuclear DNA-dependent RNA polymerases in potato spindle tuber viroid replication: a reevaluation. Plant Sci. 84, 221-229.
    • (1992) Plant Sci. , vol.84 , pp. 221-229
    • Schindler, I.-M.1    Mühlbach, H.-P.2
  • 33
    • 0001510299 scopus 로고
    • Correlation between structure and pathogenicity of potato spindle tuber viroid (PSTV)
    • Schnölzer, M., Haas, B., Ramm, K., Hofmann, H., and Sänger, H. L. (1985). Correlation between structure and pathogenicity of potato spindle tuber viroid (PSTV). EMBO J. 4, 2181-2190.
    • (1985) EMBO J. , vol.4 , pp. 2181-2190
    • Schnölzer, M.1    Haas, B.2    Ramm, K.3    Hofmann, H.4    Sänger, H.L.5
  • 34
    • 0027522146 scopus 로고
    • Isolates of citrus exocortis viroid recovered by host and tissue selection
    • Semancik, J. S., Szychowski, J. A., Rakowski, A. G., and Symons, R. H. (1993). Isolates of citrus exocortis viroid recovered by host and tissue selection. J. Gen. Virol. 74, 2427-2436.
    • (1993) J. Gen. Virol. , vol.74 , pp. 2427-2436
    • Semancik, J.S.1    Szychowski, J.A.2    Rakowski, A.G.3    Symons, R.H.4
  • 35
    • 0029080246 scopus 로고
    • RNA structure at high resolution
    • Shen, L. X., Cai, Z., and Tinoco, I., Jr. (1995). RNA structure at high resolution. FASEB J. 9, 1023-1033.
    • (1995) FASEB J. , vol.9 , pp. 1023-1033
    • Shen, L.X.1    Cai, Z.2    Tinoco I., Jr.3
  • 36
    • 0021950182 scopus 로고
    • Synthesis of (+) and (-) RNA molecules of potato spindle tuber viroid (PSTV) in isolated nuclei and its impairment by transcription inhibitors
    • Spiesmacher, E., Mühlbach, H.-P., Tabler, M., and Sänger, H. L. (1985). Synthesis of (+) and (-) RNA molecules of potato spindle tuber viroid (PSTV) in isolated nuclei and its impairment by transcription inhibitors. Biosci. Rep. 5, 251-265.
    • (1985) Biosci. Rep. , vol.5 , pp. 251-265
    • Spiesmacher, E.1    Mühlbach, H.-P.2    Tabler, M.3    Sänger, H.L.4
  • 37
    • 0028953727 scopus 로고
    • The sarcin/ricin loop, a modular RNA
    • Szewczak, A. A., and Moore, P. B. (1995). The sarcin/ricin loop, a modular RNA. J. Mol. Biol. 247, 81-98.
    • (1995) J. Mol. Biol. , vol.247 , pp. 81-98
    • Szewczak, A.A.1    Moore, P.B.2
  • 38
    • 0021767865 scopus 로고
    • Cloned single-and double-stranded DNA copies of potato spindle tuber viroid (PSTV) and coinoculated subgenomic DNA fragments are infectious
    • Tabler, M., and Sänger, H. L. (1984). Cloned single-and double-stranded DNA copies of potato spindle tuber viroid (PSTV) and coinoculated subgenomic DNA fragments are infectious. EMBO J. 3, 3055-3062.
    • (1984) EMBO J. , vol.3 , pp. 3055-3062
    • Tabler, M.1    Sänger, H.L.2
  • 39
    • 0028031830 scopus 로고
    • RNA-directed de novo methylation of genomic sequences in plants
    • Wassenegger, M., Heimes, S., Redel, L., and Sänger, H. L. (1994a). RNA-directed de novo methylation of genomic sequences in plants. Cell 76, 567-576.
    • (1994) Cell , vol.76 , pp. 567-576
    • Wassenegger, M.1    Heimes, S.2    Redel, L.3    Sänger, H.L.4
  • 40
    • 0028670739 scopus 로고
    • An infectious viroid RNA replicon evolved from an in vitro-generated non-infectious viroid deletion mutant via a complementary deletion in vivo
    • Wassenegger, M., Heimes, S., and Sänger, H. L. (1994b). An infectious viroid RNA replicon evolved from an in vitro-generated non-infectious viroid deletion mutant via a complementary deletion in vivo. EMBO J. 13, 6172-6177.
    • (1994) EMBO J. , vol.13 , pp. 6172-6177
    • Wassenegger, M.1    Heimes, S.2    Sänger, H.L.3
  • 41
    • 0027439912 scopus 로고
    • The conformation of loop E of eukaryotic 5S ribosomal RNA
    • Wimberly, B., Varani, G., and Tinoco, I., Jr. (1993). The conformation of loop E of eukaryotic 5S ribosomal RNA. Biochemistry 32, 1078-1087.
    • (1993) Biochemistry , vol.32 , pp. 1078-1087
    • Wimberly, B.1    Varani, G.2    Tinoco I., Jr.3
  • 42
    • 0023657074 scopus 로고
    • Role of a bulged A residue in a specific RNA protein interaction
    • Wu, H.-N., and Uhlenbeck, O. C. (1987). Role of a bulged A residue in a specific RNA protein interaction. Biochemistry 26: 8221-8227.
    • (1987) Biochemistry , vol.26 , pp. 8221-8227
    • Wu, H.-N.1    Uhlenbeck, O.C.2


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