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Volumn 54, Issue 1, 2010, Pages 213-220

Mapping simocyclinone D8 interaction with DNA gyrase: Evidence for a new binding site on GyrB

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE DERIVATIVE; ADPNP; ANTIBIOTIC AGENT; COUMARIN DERIVATIVE; DNA TOPOISOMERASE (ATP HYDROLYSING); DNA TOPOISOMERASE (ATP HYDROLYSING) A; DNA TOPOISOMERASE (ATP HYDROLYSING) B; NOVOBIOCIN; SIMOCYCLINONE D8; UNCLASSIFIED DRUG;

EID: 73849150169     PISSN: 00664804     EISSN: 10986596     Source Type: Journal    
DOI: 10.1128/AAC.00972-09     Document Type: Article
Times cited : (23)

References (38)
  • 1
    • 0027419771 scopus 로고
    • The 43-kilodalton N-terminal fragment of the DNA gyrase B protein hydrolyzes ATP and binds coumarin drugs
    • Ali, J. A., A. P. Jackson, A. J. Howells, and A. Maxwell. 1993. The 43-kilodalton N-terminal fragment of the DNA gyrase B protein hydrolyzes ATP and binds coumarin drugs. Biochemistry 32:2717-2724.
    • (1993) Biochemistry , vol.32 , pp. 2717-2724
    • Ali, J.A.1    Jackson, A.P.2    Howells, A.J.3    Maxwell, A.4
  • 2
    • 0029166885 scopus 로고
    • Nucleotide binding to the 43-kilodalton N-terminal fragment of the DNA gyrase B protein
    • Ali, J. A., G. Orphanides, and A. Maxwell. 1995. Nucleotide binding to the 43-kilodalton N-terminal fragment of the DNA gyrase B protein. Biochemistry 34:9801-9808.
    • (1995) Biochemistry , vol.34 , pp. 9801-9808
    • Ali, J.A.1    Orphanides, G.2    Maxwell, A.3
  • 3
    • 0033839497 scopus 로고    scopus 로고
    • The fluoroquinolone antibacterials: Past, present and future perspectives
    • Appelbaum, P. C., and P. A. Hunter. 2000. The fluoroquinolone antibacterials: past, present and future perspectives. Int. J. Antimicrob. Agents 16:5-15.
    • (2000) Int. J. Antimicrob. Agents , vol.16 , pp. 5-15
    • Appelbaum, P.C.1    Hunter, P.A.2
  • 4
    • 0028301615 scopus 로고
    • Domain structure of Escherichia coli DNA gyrase as revealed by differential scanning calorimetry
    • Blandamer, M. J., B. Briggs, P. M. Cullis, A. P. Jackson, A. Maxwell, and R. J. Reece. 1994. Domain structure of Escherichia coli DNA gyrase as revealed by differential scanning calorimetry. Biochemistry 33:7510-7516.
    • (1994) Biochemistry , vol.33 , pp. 7510-7516
    • Blandamer, M.J.1    Briggs, B.2    Cullis, P.M.3    Jackson, A.P.4    Maxwell, A.5    Reece, R.J.6
  • 8
    • 0036315519 scopus 로고    scopus 로고
    • Cloning and analysis of the simocyclinone biosynthetic gene cluster of Streptomyces antibioticus Tu 6040
    • Galm, U., J. Schimana, H. P. Fiedler, J. Schmidt, S. M. Li, and L. Heide. 2002. Cloning and analysis of the simocyclinone biosynthetic gene cluster of Streptomyces antibioticus Tu 6040. Arch. Microbiol. 178:102-114.
    • (2002) Arch. Microbiol , vol.178 , pp. 102-114
    • Galm, U.1    Schimana, J.2    Fiedler, H.P.3    Schmidt, J.4    Li, S.M.5    Heide, L.6
  • 11
    • 0029868593 scopus 로고    scopus 로고
    • The interaction of coumarin antibiotics with fragments of DNA gyrase B protein
    • Gormley, N. A., G. Orphanides, A. Meyer, P. M. Cullis, and A. Maxwell. 1996. The interaction of coumarin antibiotics with fragments of DNA gyrase B protein. Biochemistry 35:5083-5092.
    • (1996) Biochemistry , vol.35 , pp. 5083-5092
    • Gormley, N.A.1    Orphanides, G.2    Meyer, A.3    Cullis, P.M.4    Maxwell, A.5
  • 12
    • 0033736170 scopus 로고    scopus 로고
    • The interaction of drugs with DNA gyrase: A model for the molecular basis of quinolone action
    • Heddle, J. G., F. M. Barnard, L. M. Wentzell, and A. Maxwell. 2000. The interaction of drugs with DNA gyrase: a model for the molecular basis of quinolone action. Nucleosides Nucleotides Nucleic Acids 19:1249-1264.
    • (2000) Nucleosides Nucleotides Nucleic Acids , vol.19 , pp. 1249-1264
    • Heddle, J.G.1    Barnard, F.M.2    Wentzell, L.M.3    Maxwell, A.4
  • 13
    • 0036219726 scopus 로고    scopus 로고
    • Simocyclinones, novel cytostatic angucyclinone antibiotics produced by Streptomyces antibioticus Tu 6040 II. Structure elucidation and biosynthesis
    • Holzenkampfer, M., M. Walker, A. Zeeck, J. Schimana, and H. P. Fiedler. 2002. Simocyclinones, novel cytostatic angucyclinone antibiotics produced by Streptomyces antibioticus Tu 6040 II. Structure elucidation and biosynthesis. J. Antibiot. (Tokyo) 55:301-307.
    • (2002) J. Antibiot. (Tokyo) , vol.55 , pp. 301-307
    • Holzenkampfer, M.1    Walker, M.2    Zeeck, A.3    Schimana, J.4    Fiedler, H.P.5
  • 14
    • 0032575610 scopus 로고    scopus 로고
    • Conformational changes in DNA gyrase revealed by limited proteolysis
    • Kampranis, S. C., and A. Maxwell. 1998. Conformational changes in DNA gyrase revealed by limited proteolysis. J. Biol. Chem. 273:22606- 22614.
    • (1998) J. Biol. Chem , vol.273 , pp. 22606-22614
    • Kampranis, S.C.1    Maxwell, A.2
  • 16
    • 58149147607 scopus 로고    scopus 로고
    • Therapeutic challenges in the era of antibiotic resistance
    • Lee, C. 2008. Therapeutic challenges in the era of antibiotic resistance. Int. J. Antimicrob. Agents 32(Suppl. 4):S197-S199.
    • (2008) Int. J. Antimicrob. Agents , vol.32 , Issue.SUPPL. 4
    • Lee, C.1
  • 17
    • 0029978822 scopus 로고    scopus 로고
    • The nature of inhibition of DNA gyrase by the coumarins and the cyclothialidines revealed by X-ray crystallography
    • Lewis, R. J., O. M. Singh, C. V. Smith, T. Skarzynski, A. Maxwell, A. J. Wonacott, and D. B. Wigley. 1996. The nature of inhibition of DNA gyrase by the coumarins and the cyclothialidines revealed by X-ray crystallography. EMBO J. 15:1412-1420.
    • (1996) EMBO J , vol.15 , pp. 1412-1420
    • Lewis, R.J.1    Singh, O.M.2    Smith, C.V.3    Skarzynski, T.4    Maxwell, A.5    Wonacott, A.J.6    Wigley, D.B.7
  • 18
    • 0022361531 scopus 로고
    • Sites of reaction of Escherichia coli DNA gyrase on pBR322 in vivo as revealed by oxolinic acid-induced plasmid linearization
    • Lockshon, D., and D. R. Morris. 1985. Sites of reaction of Escherichia coli DNA gyrase on pBR322 in vivo as revealed by oxolinic acid-induced plasmid linearization. J. Mol. Biol. 181:63-74.
    • (1985) J. Mol. Biol , vol.181 , pp. 63-74
    • Lockshon, D.1    Morris, D.R.2
  • 19
    • 0032973659 scopus 로고    scopus 로고
    • DNA gyrase as a drug target
    • Maxwell, A. 1999. DNA gyrase as a drug target. Biochem. Soc. Trans. 27:48-53.
    • (1999) Biochem. Soc. Trans , vol.27 , pp. 48-53
    • Maxwell, A.1
  • 20
    • 0027200479 scopus 로고
    • The interaction between coumarin drugs and DNA gyrase
    • Maxwell, A. 1993. The interaction between coumarin drugs and DNA gyrase. Mol. Microbiol. 9:681-686.
    • (1993) Mol. Microbiol , vol.9 , pp. 681-686
    • Maxwell, A.1
  • 21
    • 0012684806 scopus 로고    scopus 로고
    • The ATP-binding site of type II topoisomerases as a target for antibacterial drugs
    • Maxwell, A., and D. M. Lawson. 2003. The ATP-binding site of type II topoisomerases as a target for antibacterial drugs. Curr. Top. Med. Chem. 3:283-303.
    • (2003) Curr. Top. Med. Chem , vol.3 , pp. 283-303
    • Maxwell, A.1    Lawson, D.M.2
  • 22
    • 61449170223 scopus 로고    scopus 로고
    • Antimicrobial resistance in hospitals: How concerned should we be?
    • Mulvey, M. R., and A. E. Simor. 2009. Antimicrobial resistance in hospitals: how concerned should we be? CMAJ 180:408-415.
    • (2009) CMAJ , vol.180 , pp. 408-415
    • Mulvey, M.R.1    Simor, A.E.2
  • 23
    • 0036304446 scopus 로고    scopus 로고
    • The role of GyrB in the DNA cleavage-religation reaction of DNA gyrase: A proposed two metal-ion mechanism
    • Noble, C. G., and A. Maxwell. 2002. The role of GyrB in the DNA cleavage-religation reaction of DNA gyrase: a proposed two metal-ion mechanism. J. Mol. Biol. 318:361-371.
    • (2002) J. Mol. Biol , vol.318 , pp. 361-371
    • Noble, C.G.1    Maxwell, A.2
  • 24
    • 34247350048 scopus 로고    scopus 로고
    • Thirty years of Escherichia coli DNA gyrase: From in vivo function to single-molecule mechanism
    • Nollmann, M., N. J. Crisona, and P. B. Arimondo. 2007. Thirty years of Escherichia coli DNA gyrase: from in vivo function to single-molecule mechanism. Biochimie 89:490-499.
    • (2007) Biochimie , vol.89 , pp. 490-499
    • Nollmann, M.1    Crisona, N.J.2    Arimondo, P.B.3
  • 25
    • 34548628774 scopus 로고    scopus 로고
    • Discovery and development of ATPase inhibitors of DNA gyrase as antibacterial agents
    • Oblak, M., M. Kotnik, and T. Solmajer. 2007. Discovery and development of ATPase inhibitors of DNA gyrase as antibacterial agents. Curr. Med. Chem. 14:2033-2047.
    • (2007) Curr. Med. Chem , vol.14 , pp. 2033-2047
    • Oblak, M.1    Kotnik, M.2    Solmajer, T.3
  • 26
    • 66149137945 scopus 로고    scopus 로고
    • In vivo and in vitro patterns of the activity of simocyclinone D8, an angucyclinone antibiotic from Streptomyces antibioticus
    • Oppegard, L. M., B. L. Hamann, K. R. Streck, K. C. Ellis, H. P. Fiedler, A. B. Khodursky, and H. Hiasa. 2009. In vivo and in vitro patterns of the activity of simocyclinone D8, an angucyclinone antibiotic from Streptomyces antibioticus. Antimicrob. Agents Chemother. 53:2110-2119.
    • (2009) Antimicrob. Agents Chemother , vol.53 , pp. 2110-2119
    • Oppegard, L.M.1    Hamann, B.L.2    Streck, K.R.3    Ellis, K.C.4    Fiedler, H.P.5    Khodursky, A.B.6    Hiasa, H.7
  • 29
    • 73849133669 scopus 로고    scopus 로고
    • Sadiq, A. A., M. R. Patel, B. A. Jacobson, M. Escobedo, K. Ellis, L. M. Oppegard, H. Hiasa, and R. A. Kratzke. 10 January 2009, posting date. Anti-proliferative effects of simocyclinone D8 (SD8), a novel catalytic inhibitor of topoisomerase II. Invest. New Drugs [Epub ahead of print.].
    • Sadiq, A. A., M. R. Patel, B. A. Jacobson, M. Escobedo, K. Ellis, L. M. Oppegard, H. Hiasa, and R. A. Kratzke. 10 January 2009, posting date. Anti-proliferative effects of simocyclinone D8 (SD8), a novel catalytic inhibitor of topoisomerase II. Invest. New Drugs [Epub ahead of print.].
  • 30
    • 0033850369 scopus 로고    scopus 로고
    • Schimana, J., H. P. Fiedler, I. Groth, R. Sussmuth, W. Beil, M. Walker, and A. Zeeck. 2000. Simocyclinones, novel cytostatic angucyclinone antibiotics produced by Streptomyces antibioticus Tu 6040. I. Taxonomy, fermentation, isolation and biological activities. J. Antibiot. (Tokyo) 53:779-787.
    • Schimana, J., H. P. Fiedler, I. Groth, R. Sussmuth, W. Beil, M. Walker, and A. Zeeck. 2000. Simocyclinones, novel cytostatic angucyclinone antibiotics produced by Streptomyces antibioticus Tu 6040. I. Taxonomy, fermentation, isolation and biological activities. J. Antibiot. (Tokyo) 53:779-787.
  • 31
    • 50649101663 scopus 로고    scopus 로고
    • DNA topoisomerases: Harnessing and constraining energy to govern chromosome topology
    • Schoeffler, A. J., and J. M. Berger. 2008. DNA topoisomerases: harnessing and constraining energy to govern chromosome topology. Q. Rev. Biophys. 41:41-101.
    • (2008) Q. Rev. Biophys , vol.41 , pp. 41-101
    • Schoeffler, A.J.1    Berger, J.M.2
  • 32
    • 49749088706 scopus 로고    scopus 로고
    • DNA gyrase requires DNA for effective two-site coordination of divalent metal ions: Further insight into the mechanism of enzyme action
    • Sissi, C., A. Chemello, E. Vazquez, L. A. Mitchenall, A. Maxwell, and M. Palumbo. 2008. DNA gyrase requires DNA for effective two-site coordination of divalent metal ions: further insight into the mechanism of enzyme action. Biochemistry 47:8538-8545.
    • (2008) Biochemistry , vol.47 , pp. 8538-8545
    • Sissi, C.1    Chemello, A.2    Vazquez, E.3    Mitchenall, L.A.4    Maxwell, A.5    Palumbo, M.6
  • 33
    • 27144482726 scopus 로고    scopus 로고
    • The effects of metal ions on the structure and stability of the DNA gyrase B protein
    • Sissi, C., E. Marangon, A. Chemello, C. G. Noble, A. Maxwell, and M. Palumbo. 2005. The effects of metal ions on the structure and stability of the DNA gyrase B protein. J. Mol. Biol. 353:1152-1160.
    • (2005) J. Mol. Biol , vol.353 , pp. 1152-1160
    • Sissi, C.1    Marangon, E.2    Chemello, A.3    Noble, C.G.4    Maxwell, A.5    Palumbo, M.6
  • 34
    • 0035800671 scopus 로고    scopus 로고
    • Ciprofloxacin affects conformational equilibria of DNA gyrase A in the presence of magnesium ions
    • Sissi, C., E. Perdona, E. Domenici, A. Feriani, A. J. Howells, A. Maxwell, and M. Palumbo. 2001. Ciprofloxacin affects conformational equilibria of DNA gyrase A in the presence of magnesium ions. J. Mol. Biol. 311:195-203.
    • (2001) J. Mol. Biol , vol.311 , pp. 195-203
    • Sissi, C.1    Perdona, E.2    Domenici, E.3    Feriani, A.4    Howells, A.J.5    Maxwell, A.6    Palumbo, M.7
  • 35
    • 58149143261 scopus 로고    scopus 로고
    • What's new on the antimicrobial horizon?
    • Song, J. H. 2008. What's new on the antimicrobial horizon? Int. J. Antimicrob. Agents 32(Suppl. 4):S207-S213.
    • (2008) Int. J. Antimicrob. Agents , vol.32 , Issue.SUPPL. 4
    • Song, J.H.1
  • 37
    • 0001534829 scopus 로고
    • Mechanism of action of nalidixic acid: Purification of Escherichia coli nalA gene product and its relationship to DNA gyrase and a novel nicking-closing enzyme
    • Sugino, A., C. L. Peebles, K. N. Kreuzer, and N. R. Cozzarelli. 1977. Mechanism of action of nalidixic acid: purification of Escherichia coli nalA gene product and its relationship to DNA gyrase and a novel nicking-closing enzyme. Proc. Natl. Acad. Sci. U. S. A. 74:4767-4771.
    • (1977) Proc. Natl. Acad. Sci. U. S. A , vol.74 , pp. 4767-4771
    • Sugino, A.1    Peebles, C.L.2    Kreuzer, K.N.3    Cozzarelli, N.R.4
  • 38
    • 0034450927 scopus 로고    scopus 로고
    • Microbial growth and production kinetics of Streptomyces antibioticus Tu 6040
    • Theobald, U., J. Schimana, and H. P. Fiedler. 2000. Microbial growth and production kinetics of Streptomyces antibioticus Tu 6040. Antonie Van Leeuwenhoek 78:307-313.
    • (2000) Antonie Van Leeuwenhoek , vol.78 , pp. 307-313
    • Theobald, U.1    Schimana, J.2    Fiedler, H.P.3


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