DNA LIGASE I exerts a maternal effect on seed development in Arabidopsis thaliana

Development

Volumn 137, Issue 1, 2010, Pages 73-81

  Andreuzza, Sebastien ^a,b,e   Li, Jing ^a   Guitton, Anne Elisabeth ^b   Faure, Jean Emmanuel ^b,d   Casanova, Sandrine ^b   Park, Jin Sup ^c   Choi, Yeonhee ^c   Chen, Zhong ^a   Berger, Frédéric ^a  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^b UNIVERSITÉ DE LYON   (France)

^c Seoul National University   (South Korea)

^d EUROPEAN COMMISSION   (Belgium)

^e CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

Author keywords

Arabidopsis; Endosperm; Maternal effect; Seed; Sexual reproduction

Indexed keywords

POLYDEOXYRIBONUCLEOTIDE SYNTHASE; POLYDEOXYRIBONUCLEOTIDE SYNTHASE I; UNCLASSIFIED DRUG;

ARABIDOPSIS; ARTICLE; CONTROLLED STUDY; ENDOSPERM; GENE EXPRESSION; GENE FREQUENCY; GENE IDENTIFICATION; GENE INTERACTION; GENE MAPPING; GENE MUTATION; GENETIC ANALYSIS; METHYLATION; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROTEIN FUNCTION; SEED DEVELOPMENT; SINGLE STRANDED DNA BREAK;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; DNA LIGASES; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; MICROSCOPY, CONFOCAL; MODELS, GENETIC; N-GLYCOSYL HYDROLASES; PHENOTYPE; PLANTS, GENETICALLY MODIFIED; POLYMORPHISM, GENETIC; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SEEDS; TRANS-ACTIVATORS;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 73649112406     PISSN: 09501991     EISSN: 14779129     Source Type: Journal    
DOI: 10.1242/dev.041020     Document Type: Article

References (57)

1. Berger, F., Hamamura, Y., Ingouff, M. and Higashiyama, T. (2008). Double fertilization-caught in the act. Trends Plant Sci. 13, 437-443.
2. Boisnard-Lorig, C., Colon-Carmona, A., Bauch, M., Hodge, S., Doerner, P., Bancharel, E., Dumas, C., Haseloff, J. and Berger, F. (2001). Dynamic analyses of the expression of the HISTONE::YFP fusion protein in arabidopsis show that syncytial endosperm is divided in mitotic domains. Plant Cell 13, 495-509.
3. Borg, M., Brownfield, L. and Twell, D. (2009). Male gametophyte development: a molecular perspective. J. Exp. Bot. 5, 1465-1478.
4. Chaudhury, A. M. and Berger, F. (2001). Maternal control of seed development. Semin. Cell Dev. Biol. 12, 381-386.
5. Chaudhury, A. M., Ming, L., Miller, C., Craig, S., Dennis, E. S. and Peacock, W. J. (1997). Fertilization-independent seed development in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 94, 4223-4228.
6. Cheng, W., Taliercio, E. W. and Chourey, P. S. (1996). The miniature1 seed locus of maize encodes a cell wall invertase required for normal development of endosperm and maternal cells in the pedicel. Plant Cell 8, 971-983.
7. Choi, Y., Gehring, M., Johnson, L., Hannon, M., Harada, J. J., Goldberg, R. B., Jacobsen, S. E. and Fischer, R. L. (2002). DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in Arabidopsis. Cell 110, 33-42.
8. Colombo, L., Franken, J., Van der Krol, A. R., Wittich, P. E., Dons, H. J. and Angenent, G. C. (1997). Downregulation of ovule-specific MADS box genes from petunia results in maternally controlled defects in seed development. Plant Cell 9, 703-715.
9. Curtis, M. D. and Grossniklaus, U. (2003). A gateway cloning vector set for high-throughput functional analysis of genes in planta. Plant Physiol. 133, 462-469.
10. Drews, G. N. and Yadegari, R. (2002). Development and function of the angiosperm female gametophyte. Annu. Rev. Genet. 36, 99-124.
11. Evans, M. M. (2007). The indeterminate gametophyte1 gene of maize encodes a LOB domain protein required for embryo Sac and leaf development. Plant Cell 19, 46-62.
12. Garcia, D., Fitz Gerald, J. N. and Berger, F. (2005). Maternal control of integument cell elongation and zygotic control of endosperm growth are coordinated to determine seed size in Arabidopsis. Plant Cell 17, 52-60.
13. Gehring, M., Huh, J. H., Hsieh, T. F., Penterman, J., Choi, Y., Harada, J. J., Goldberg, R. B. and Fischer, R. L. (2006). DEMETER DNA glycosylase establishes MEDEA Polycomb gene self-imprinting by allele-specific demethylation. Cell 124, 495-506.
14. Grini, P. E., Jurgens, G. and Hulskamp, M. (2002). Embryo and endosperm development is disrupted in the female gametophytic capulet mutants of Arabidopsis. Genetics 162, 1911-1925.
15. Grossniklaus, U., Vielle-Calzada, J. P., Hoeppner, M. A. and Gagliano, W. B. (1998). Maternal control of embryogenesis by MEDEA, a polycomb group gene in Arabidopsis. Science 280, 446-450.
16. Guitton, A. E., Page, D. R., Chambrier, P., Lionnet, C., Faure, J. E., Grossniklaus, U. and Berger, F. (2004). Identification of new members of Fertilisation Independent Seed Polycomb Group pathway involved in the control of seed development in Arabidopsis thaliana. Development 131, 2971-2981.
17. Gutierrez-Marcos, J. F., Costa, L. M., Biderre-Petit, C., Khbaya, B., O'Sullivan, D. M., Wormald, M., Perez, P. and Dickinson, H. G. (2004). maternally expressed gene1 Is a novel maize endosperm transfer cell-specific gene with a maternal parent-of-origin pattern of expression. Plant Cell 16, 1288-1301.
18. Gutierrez-Marcos, J. F., Costa, L. M., Dal Pra, M., Scholten, S., Kranz, E., Perez, P. and Dickinson, H. G. (2006). Epigenetic asymmetry of imprinted genes in plant gametes. Nat. Genet. 38, 876-878.
19. Hermon, P., Srilunchang, K. O., Zou, J., Dresselhaus, T. and Danilevskaya, O. N. (2007). Activation of the imprinted Polycomb Group Fie1 gene in maize endosperm requires demethylation of the maternal allele. Plant Mol. Biol. 64, 387-395.
20. Hueros, G., Royo, J., Maitz, M., Salamini, F. and Thompson, R. D. (1999). Evidence for factors regulating transfer cell-specific expression in maize endosperm. Plant Mol. Biol. 41, 403-414.
21. Ingouff, M., Haseloff, J. and Berger, F. (2005). Polycomb group genes control developmental timing of endosperm. Plant J. 42, 663-674.
22. Ingouff, M., Jullien, P. E. and Berger, F. (2006). The female gametophyte and the endosperm control cell proliferation and differentiation of the seed coat in Arabidopsis. Plant Cell 18, 3491-3501.
23. Ingouff, M., Hamamura, Y., Gourgues, M., Higashiyama, T. and Berger, F. (2007). Distinct dynamics of HISTONE3 variants between the two fertilization products in plants. Curr. Biol. 17, 1032-1037.
24. Jullien, P. E., Kinoshita, T., Ohad, N. and Berger, F. (2006). Maintenance of DNA methylation during the Arabidopsis life cycle is essential for parental imprinting. Plant Cell 18, 1360-1372.
25. Kinoshita, T., Yadegari, R., Harada, J. J., Goldberg, R. B. and Fischer, R. L. (1999). Imprinting of the MEDEA polycomb gene in the Arabidopsis endosperm. Plant Cell 11, 1945-1952.
26. Kinoshita, T., Harada, J. J., Goldberg, R. B. and Fischer, R. L. (2001). Polycomb repression of flowering during early plant development. Proc. Natl. Acad. Sci. USA 98, 14156-14161.
27. Kinoshita, T., Miura, A., Choi, Y., Kinoshita, Y., Cao, X., Jacobsen, S. E., Fischer, R. L. and Kakutani, T. (2004). One-way control of FWA imprinting in Arabidopsis endosperm by DNA methylation. Science 303, 521-523.
28. Kiyosue, T., Ohad, N., Yadegari, R., Hannon, M., Dinneny, J., Wells, D., Katz, A., Margossian, L., Harada, J. J., Goldberg, R. B. et al. (1999). Control of fertilization-independent endosperm development by the MEDEA polycomb gene in Arabidopsis. Proc. Natl. Acad. Sci. USA 96, 4186-4191.
29. Kohler, C., Hennig, L., Bouveret, R., Gheyselinck, J., Grossniklaus, U. and Gruissem, W. (2003). Arabidopsis MSI1 is a component of the MEA/FIE Polycomb group complex and required for seed development. EMBO J. 22, 4804-4814.
30. Leroy, O., Hennig, L., Breuninger, H., Laux, T. and Kohler, C. (2007). Polycomb group proteins function in the female gametophyte to determine seed development in plants. Development 134, 3639-3648.
31. Liu, C. M. and Meinke, D. W. (1998). The titan mutants of Arabidopsis are disrupted in mitosis and cell cycle control during seed development. Plant J. 16, 21-31.
32. Luo, M., Bilodeau, P., Koltunow, A., Dennis, E. S., Peacock, W. J. and Chaudhury, A. M. (1999). Genes controlling fertilization-independent seed development in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 96, 296-301.
33. Luo, M., Bilodeau, P., Dennis, E. S., Peacock, W. J. and Chaudhury, A. (2000). Expression and parent-of-origin effects for FIS2, MEA, and FIE in the endosperm and embryo of developing Arabidopsis seeds. Proc. Natl. Acad. Sci. USA 97, 10637-10642.
34. Martin, I. V. and MacNeill, S. A. (2002). ATP-dependent DNA ligases. Genome Biol. 3, REVIEWS3005.
35. Meyer, S. and Scholten, S. (2007). Equivalent parental contribution to early plant zygotic development. Curr. Biol. 17, 1686-1691.
36. Miller, M. E. and Chourey, P. S. (1992). The maize invertase-deficient miniature-1 seed mutation is associated with aberrant pedicel and endosperm development. Plant Cell 4, 297-305.
37. Ngo, Q. A., Moore, J. M., Baskar, R., Grossniklaus, U. and Sundaresan, V. (2007). Arabidopsis GLAUCE promotes fertilization-independent endosperm development and expression of paternally inherited alleles. Development 134, 4107-4117.
38. Ohad, N., Yadegari, R., Margossian, L., Hannon, M., Michaeli, D., Harada, J. J., Goldberg, R. B. and Fischer, R. L. (1999). Mutations in FIE, a WD polycomb group gene, allow endosperm development without fertilization. Plant Cell 11, 407-416.
39. Ortega-Galisteo, A. P., Morales-Ruiz, T., Ariza, R. R. and Roldan-Arjona, T. (2008). Arabidopsis DEMETER-LIKE proteins DML2 and DML3 are required for appropriate distribution of DNA methylation marks. Plant Mol. Biol. 67, 671-681.
40. Pagnussat, G. C., Yu, H. J., Ngo, Q. A., Rajani, S., Mayalagu, S., Johnson, C. S., Capron, A., Xie, L. F., Ye, D. and Sundaresan, V. (2005). Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Development 132, 603-614.
41. Penterman, J., Zilberman, D., Huh, J. H., Ballinger, T., Henikoff, S. and Fischer, R. L. (2007). DNA demethylation in the Arabidopsis genome. Proc. Natl. Acad. Sci. USA 104, 6752-6757.
42. Rai, K., Huggins, I. J., James, S. R., Karpf, A. R., Jones, D. A. and Cairns, B. R. (2008). DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45. Cell 135, 1201-1212.
43. Riechmann, V. and Ephrussi, A. (2001). Axis formation during Drosophila oogenesis. Curr. Opin. Genet. Dev. 11, 374-383.
44. Sancar, A., Lindsey-Boltz, L. A., Unsal-Kacmaz, K. and Linn, S. (2004). Molecular mechanisms of mammalian DNA repair and the DNA damage checkpoints. Ann. Rev. Biochem. 73, 39-85.
45. Sardet, C., Prodon, F., Pruliere, G. and Chenevert, J. (2004). Polarisation des oeufs et des embryons: principes communs. Med. Sci. 20, 414-423.
46. Schruff, M. C., Spielman, M., Tiwari, S., Adams, S., Fenby, N. and Scott, R. J. (2006). The AUXIN RESPONSE FACTOR 2 gene of Arabidopsis links auxin signalling, cell division, and the size of seeds and other organs. Development 133, 251-261.
47. Scott, R. J., Spielman, M., Bailey, J. and Dickinson, H. G. (1998). Parent-of-origin effects on seed development in Arabidopsis thaliana. Development 125, 3329-3341.
48. Sorensen, M. B., Mayer, U., Lukowitz, W., Robert, H., Chambrier, P., Jurgens, G., Somerville, C., Lepiniec, L. and Berger, F. (2002). Cellularisation in the endosperm of Arabidopsis thaliana is coupled to mitosis and shares multiple components with cytokinesis. Development 129, 5567-5576.
49. Springer, P. S., McCombie, W. R., Sundaresan, V. and Martienssen, R. A. (1995). Gene trap tagging of PROLIFERA, an essential MCM2-3-5-like gene in Arabidopsis. Science 268, 877-880.
50. Springer, P. S., Holding, D. R., Groover, A., Yordan, C. and Martienssen, R. A. (2000). The essential Mcm7 protein PROLIFERA is localized to the nucleus of dividing cells during the G(1) phase and is required maternally for early Arabidopsis development. Development 127, 1815-1822.
51. Sunderland, P. A., West, C. E., Waterworth, W. M. and Bray, C. M. (2006). An evolutionarily conserved translation initiation mechanism regulates nuclear or mitochondrial targeting of DNA ligase 1 in Arabidopsis thaliana. Plant J. 47, 356-367.
52. Taylor, R. M., Hamer, M. J., Rosamond, J. and Bray, C. M. (1998). Molecular cloning and functional analysis of the Arabidopsis thaliana DNA ligase I homologue. Plant J. 14, 75-81.
53. Timson, D. J., Singleton, M. R. and Wigley, D. B. (2000). DNA ligases in the repair and replication of DNA. Mutat. Res. 460, 301-318.
54. Van Attikum, H. and Gasser, S. M. (2009). Crosstalk between histone modifications during the DNA damage response. Trends Cell Biol. 19, 207-217.
55. Vielle-Calzada, J. P., Baskar, R. and Grossniklaus, U. (2000). Delayed activation of the paternal genome during seed development. Nature 404, 91-94.
56. Weijers, D., Geldner, N., Offringa, R. and Jurgens, G. (2001). Seed development: Early paternal gene activity in Arabidopsis. Nature 414, 709-710.
57. Yadegari, R., Kinoshita, T., Lotan, O., Cohen, G., Katz, A., Choi, Y., Nakashima, K., Harada, J. J., Goldberg, R. B., Fischer, R. L. et al. (2000). Mutations in the FIE and MEA genes that encode interacting polycomb proteins cause parent-of-origin effects on seed development by distinct mechanisms. Plant Cell 12, 2367-2381.