-
1
-
-
0034610814
-
The language of covalent histone modifications
-
Strahl, B. D.; Allis, C. D. The language of covalent histone modifications. Nature 2000, 403 (6765), 41-45.
-
(2000)
Nature
, vol.403
, Issue.6765
, pp. 41-45
-
-
Strahl, B.D.1
Allis, C.D.2
-
2
-
-
59349100985
-
Dynamic protein methylation in chromatin biology
-
Ng, S. S.; Yue, W. W.; Oppermann, U.; Klose, R. J. Dynamic protein methylation in chromatin biology. Cell. Mol. Life Sci. 2009, 66 (3), 407-422.
-
(2009)
Cell. Mol. Life Sci
, vol.66
, Issue.3
, pp. 407-422
-
-
Ng, S.S.1
Yue, W.W.2
Oppermann, U.3
Klose, R.J.4
-
3
-
-
27644589675
-
The diverse functions of histone lysine methylation
-
Martin, C.; Zhang, Y. The diverse functions of histone lysine methylation. Nat. Rev. Mol. Cell Biol. 2005, 6 (11), 838-849.
-
(2005)
Nat. Rev. Mol. Cell Biol
, vol.6
, Issue.11
, pp. 838-849
-
-
Martin, C.1
Zhang, Y.2
-
4
-
-
38349035858
-
Arginine methylation at a glance
-
Bedford, M. T. Arginine methylation at a glance. J. Cell Sci. 2007, 120 (24), 4243-4246.
-
(2007)
J. Cell Sci
, vol.120
, Issue.24
, pp. 4243-4246
-
-
Bedford, M.T.1
-
5
-
-
28044433451
-
Protein posttranslational modifications: The chemistry of proteome diversifications
-
Walsh, C. T.; Garneau-Tsodikova, S.; Gatto, G. J. Protein posttranslational modifications: The chemistry of proteome diversifications. Angew. Chem., Int. Ed. 2005, 44 (45), 7342-7372.
-
(2005)
Angew. Chem., Int. Ed
, vol.44
, Issue.45
, pp. 7342-7372
-
-
Walsh, C.T.1
Garneau-Tsodikova, S.2
Gatto, G.J.3
-
6
-
-
44449117052
-
Identification and validation of eukaryotic aspartate and glutamate methylation in proteins
-
Sprung, R.; Chen, Y.; Zhang, K.; Cheng, D.; Zhang, T.; Peng, J.; Zhao, Y. Identification and validation of eukaryotic aspartate and glutamate methylation in proteins. J. Proteome Res. 2008, 7 (3), 1001-1006.
-
(2008)
J. Proteome Res
, vol.7
, Issue.3
, pp. 1001-1006
-
-
Sprung, R.1
Chen, Y.2
Zhang, K.3
Cheng, D.4
Zhang, T.5
Peng, J.6
Zhao, Y.7
-
7
-
-
0027494347
-
Protein methylation
-
Clarke, S. Protein methylation. Curr. Opin. Cell Biol. 1993, 5 (6), 977-983.
-
(1993)
Curr. Opin. Cell Biol
, vol.5
, Issue.6
, pp. 977-983
-
-
Clarke, S.1
-
8
-
-
48849107682
-
Identifying and quantifying sites of protein methylation by heavy methyl SILAC
-
Chapter 14, Unit 14.9
-
Ong, S.-E.; Mann, M., Identifying and quantifying sites of protein methylation by heavy methyl SILAC. Curr. Protoc. Protein Sci. 2006, Chapter 14, Unit 14.9.
-
(2006)
Curr. Protoc. Protein Sci
-
-
Ong, S.-E.1
Mann, M.2
-
9
-
-
20844457100
-
Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra
-
Chen, Y.; Kwon, S. W.; Kim, S. C.; Zhao, Y. M. Integrated approach for manual evaluation of peptides identified by searching protein sequence databases with tandem mass spectra. J. Proteome Res. 2005, 4 (3), 998-1005.
-
(2005)
J. Proteome Res
, vol.4
, Issue.3
, pp. 998-1005
-
-
Chen, Y.1
Kwon, S.W.2
Kim, S.C.3
Zhao, Y.M.4
-
10
-
-
67049132397
-
Mascot-derived false positive peptide identifications revealed by manual analysis of tandem mass spectra
-
Chen, Y.; Zhang, J.; Xing, G.; Zhao, Y. Mascot-derived false positive peptide identifications revealed by manual analysis of tandem mass spectra. J. Proteome Res. 2009, 8, 3141-3147.
-
(2009)
J. Proteome Res
, vol.8
, pp. 3141-3147
-
-
Chen, Y.1
Zhang, J.2
Xing, G.3
Zhao, Y.4
-
11
-
-
4544370533
-
Improved peptide identification in proteomics by two consecutive stages of mass spectrometric fragmentation
-
Olsen, J. V.; Mann, M. Improved peptide identification in proteomics by two consecutive stages of mass spectrometric fragmentation. Proc. Natl. Acad. Sci. U.S.A. 2004, 101 (37), 13417-13422.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A
, vol.101
, Issue.37
, pp. 13417-13422
-
-
Olsen, J.V.1
Mann, M.2
-
12
-
-
51449083131
-
Multi-spectra peptide sequencing and its applications to multistage mass spectrometry
-
Bandeira, N.; Olsen, J. V.; Mann, J. V.; Mann, M.; Pevzner, P. A. Multi-spectra peptide sequencing and its applications to multistage mass spectrometry. Bioinformatics 2008, 24 (13), i416-23.
-
(2008)
Bioinformatics
, vol.24
, Issue.13 I416-23
-
-
Bandeira, N.1
Olsen, J.V.2
Mann, J.V.3
Mann, M.4
Pevzner, P.A.5
-
13
-
-
58149489223
-
In-depth, high-accuracy proteomics of sea urchin tooth organic matrix
-
Mann, K.; Poustka, A. J.; Mann, M. In-depth, high-accuracy proteomics of sea urchin tooth organic matrix. Proteome Sci. 2008, 6.
-
(2008)
Proteome Sci
, pp. 6
-
-
Mann, K.1
Poustka, A.J.2
Mann, M.3
-
14
-
-
73649142265
-
-
Schenk, S.; Schoenhals, G. J.; de Souza, G.; Mann, M. A high confidence, manually validated human blood plasma protein reference set. BMC Med. Genomics 2008, 1, 41.
-
Schenk, S.; Schoenhals, G. J.; de Souza, G.; Mann, M. A high confidence, manually validated human blood plasma protein reference set. BMC Med. Genomics 2008, 1, 41.
-
-
-
-
15
-
-
33750456519
-
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
-
Olsen, J. V.; Blagoev, B.; Gnad, F.; Macek, B.; Kumar, C.; Mortensen, P.; Mann, M. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 2006, 127 (3), 635-648.
-
(2006)
Cell
, vol.127
, Issue.3
, pp. 635-648
-
-
Olsen, J.V.1
Blagoev, B.2
Gnad, F.3
Macek, B.4
Kumar, C.5
Mortensen, P.6
Mann, M.7
-
16
-
-
34247383227
-
Mitochondrial phosphoproteome revealed by an improved IMAC method and MS/MS/MS
-
Lee, J.; Xu, Y. D.; Chen, Y.; Sprung, R.; Kim, S. C.; Xie, S. H.; Zhao, Y. M. Mitochondrial phosphoproteome revealed by an improved IMAC method and MS/MS/MS. Mol. Cell. Proteomics 2007, 6 (4), 669-676.
-
(2007)
Mol. Cell. Proteomics
, vol.6
, Issue.4
, pp. 669-676
-
-
Lee, J.1
Xu, Y.D.2
Chen, Y.3
Sprung, R.4
Kim, S.C.5
Xie, S.H.6
Zhao, Y.M.7
-
17
-
-
39049088086
-
Investigating MS2/MS3 matching statistics
-
Ulintz, P. J.; Bodenmiller, B.; Andrews, P. C.; Aebersold, R.; Nesvizhskii, A. I. Investigating MS2/MS3 matching statistics. Mol. Cell. Proteomics 2008, 7 (1), 71-87.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, Issue.1
, pp. 71-87
-
-
Ulintz, P.J.1
Bodenmiller, B.2
Andrews, P.C.3
Aebersold, R.4
Nesvizhskii, A.I.5
-
18
-
-
33646899550
-
Top-down protein sequencing and MS3 on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer
-
Macek, B.; Waanders, L. F.; Olsen, J. V.; Mann, M. Top-down protein sequencing and MS3 on a hybrid linear quadrupole ion trap-orbitrap mass spectrometer. Mol. Cell. Proteomics 2006, 5 (5), 949-958.
-
(2006)
Mol. Cell. Proteomics
, vol.5
, Issue.5
, pp. 949-958
-
-
Macek, B.1
Waanders, L.F.2
Olsen, J.V.3
Mann, M.4
-
19
-
-
34250782684
-
Extraction, purification and analysis of histones
-
Shechter, D.; Dormann, H. L.; Allis, C. D.; Hake, S. B. Extraction, purification and analysis of histones. Nat. Protoc. 2007, 2 (6), 1445-1457.
-
(2007)
Nat. Protoc
, vol.2
, Issue.6
, pp. 1445-1457
-
-
Shechter, D.1
Dormann, H.L.2
Allis, C.D.3
Hake, S.B.4
-
20
-
-
41149159170
-
Complications in the assignment of 14 and 28 Da mass shift detected by mass spectrometry as in vivo methylation from endogenous proteins
-
Jung, S. Y.; Li, Y. H.; Wang, Y.; Chen, Y.; Zhao, Y. M.; Qin, J. Complications in the assignment of 14 and 28 Da mass shift detected by mass spectrometry as in vivo methylation from endogenous proteins. Anal. Chem. 2008, 80 (5), 1721-1729.
-
(2008)
Anal. Chem
, vol.80
, Issue.5
, pp. 1721-1729
-
-
Jung, S.Y.1
Li, Y.H.2
Wang, Y.3
Chen, Y.4
Zhao, Y.M.5
Qin, J.6
-
21
-
-
58849092421
-
PTMap-A sequence alignment software for unrestricted, accurate, and full-spectrum identification of post-translational modification sites
-
Chen, Y.; Chen, W.; Cobb, M. H.; Zhao, Y. M. PTMap-A sequence alignment software for unrestricted, accurate, and full-spectrum identification of post-translational modification sites. Proc. Natl. Acad. Sci. U.S.A. 2009, 106 (3), 761-766.
-
(2009)
Proc. Natl. Acad. Sci. U.S.A
, vol.106
, Issue.3
, pp. 761-766
-
-
Chen, Y.1
Chen, W.2
Cobb, M.H.3
Zhao, Y.M.4
-
22
-
-
55549131141
-
Mass spectrometry analysis of phosphopeptides after peptide carboxy group derivatization
-
Xu, Y. W.; Zhang, L. J.; Lu, H. J.; Yang, P. Y. Mass spectrometry analysis of phosphopeptides after peptide carboxy group derivatization. Anal. Chem. 2008, 80 (21), 8324-8328.
-
(2008)
Anal. Chem
, vol.80
, Issue.21
, pp. 8324-8328
-
-
Xu, Y.W.1
Zhang, L.J.2
Lu, H.J.3
Yang, P.Y.4
-
23
-
-
0033535961
-
Accurate quantitation of protein expression and site-specific phosphorylation
-
Oda, Y.; Huang, K.; Cross, F. R.; Cowburn, D.; Chait, B. T. Accurate quantitation of protein expression and site-specific phosphorylation. Proc. Natl. Acad. Sci. U.S.A. 1999, 96 (12), 6591-6596.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A
, vol.96
, Issue.12
, pp. 6591-6596
-
-
Oda, Y.1
Huang, K.2
Cross, F.R.3
Cowburn, D.4
Chait, B.T.5
-
24
-
-
18744375196
-
Identifying and quantifying in vivo methylation sites by heavy methyl SILAC
-
Ong, S. E.; Mittler, G.; Mann, M. Identifying and quantifying in vivo methylation sites by heavy methyl SILAC. Nat. Methods 2004, 1 (2), 119-126.
-
(2004)
Nat. Methods
, vol.1
, Issue.2
, pp. 119-126
-
-
Ong, S.E.1
Mittler, G.2
Mann, M.3
-
25
-
-
0036428393
-
Amino acid residue specific stable isotope labeling for quantitative proteomics
-
Zhu, H. N.; Pan, S. Q.; Gu, S.; Bradbury, E. M.; Chen, X. Amino acid residue specific stable isotope labeling for quantitative proteomics. Rapid Commun. Mass Spectrom. 2002, 16 (22), 2115-2123.
-
(2002)
Rapid Commun. Mass Spectrom
, vol.16
, Issue.22
, pp. 2115-2123
-
-
Zhu, H.N.1
Pan, S.Q.2
Gu, S.3
Bradbury, E.M.4
Chen, X.5
-
26
-
-
47949130351
-
Identifying differences in protein expression levels by spectral counting and feature selection
-
Carvalho, P. C.; Hewel, J.; Barbosa, V. C.; Yates, J. R. Identifying differences in protein expression levels by spectral counting and feature selection. Genetics Mol. Res. 2008, 7 (2), 342-356.
-
(2008)
Genetics Mol. Res
, vol.7
, Issue.2
, pp. 342-356
-
-
Carvalho, P.C.1
Hewel, J.2
Barbosa, V.C.3
Yates, J.R.4
-
27
-
-
27644543078
-
Comparison of label-free methods for quantifying human proteins by shotgun proteomics
-
Old, W. M.; Meyer-Arendt, K.; Aveline-Wolf, L.; Pierce, K. G.; Mendoza, A.; Sevinsky, J. R.; Resing, K. A.; Ahn, N. G. Comparison of label-free methods for quantifying human proteins by shotgun proteomics. Mol. Cell. Proteomics 2005, 4 (10), 1487-1502.
-
(2005)
Mol. Cell. Proteomics
, vol.4
, Issue.10
, pp. 1487-1502
-
-
Old, W.M.1
Meyer-Arendt, K.2
Aveline-Wolf, L.3
Pierce, K.G.4
Mendoza, A.5
Sevinsky, J.R.6
Resing, K.A.7
Ahn, N.G.8
-
28
-
-
65549106401
-
Methyl group migration during the fragmentation of singly charged ions of trimethyllysine-containing peptides: Precaution of using MS/MS of singly charged ions for interrogating peptide methylation
-
Xiong, L.; Ping, L.; Yuan, B.; Wang, Y. Methyl group migration during the fragmentation of singly charged ions of trimethyllysine-containing peptides: precaution of using MS/MS of singly charged ions for interrogating peptide methylation. J. Am. Soc. Mass Spectrom. 2009, 20 (6), 1172-1181.
-
(2009)
J. Am. Soc. Mass Spectrom
, vol.20
, Issue.6
, pp. 1172-1181
-
-
Xiong, L.1
Ping, L.2
Yuan, B.3
Wang, Y.4
-
29
-
-
0030861687
-
Novel peptide dissociation: Gas-phase intramolecular rearrangement of internal amino acid residues
-
Vachet, R. W.; Bishop, B. M.; Erickson, B. W.; Glish, G. L. Novel peptide dissociation: Gas-phase intramolecular rearrangement of internal amino acid residues. J. Am. Chem. Soc. 1997, 119 (24), 5481-5488.
-
(1997)
J. Am. Chem. Soc
, vol.119
, Issue.24
, pp. 5481-5488
-
-
Vachet, R.W.1
Bishop, B.M.2
Erickson, B.W.3
Glish, G.L.4
-
30
-
-
56949085455
-
Peptide sequence scrambling through cyclization of b(5) ions
-
Harrison, A. G. Peptide sequence scrambling through cyclization of b(5) ions. J. Am. Soc. Mass Spectrom. 2008, 19 (12), 1776-1780.
-
(2008)
J. Am. Soc. Mass Spectrom
, vol.19
, Issue.12
, pp. 1776-1780
-
-
Harrison, A.G.1
-
31
-
-
0037444731
-
Peptide rearrangement during quadrupole ion trap fragmentation: Added complexity to MS/MS spectra
-
Yague, J.; Paradela, A.; Ramos, M.; Ogueta, S.; Marina, A.; Barahona, F.; de Castro, J. A. L.; Vazquez, J. Peptide rearrangement during quadrupole ion trap fragmentation: Added complexity to MS/MS spectra. Anal. Chem. 2003, 75 (6), 1524-1535.
-
(2003)
Anal. Chem
, vol.75
, Issue.6
, pp. 1524-1535
-
-
Yague, J.1
Paradela, A.2
Ramos, M.3
Ogueta, S.4
Marina, A.5
Barahona, F.6
de Castro, J.A.L.7
Vazquez, J.8
-
32
-
-
0024689648
-
Elucidation of some fragmentations of small peptides using sequential mass spectrometry on a hybrid instrument
-
Thorne, G. C.; Gaskell, S. J. Elucidation of some fragmentations of small peptides using sequential mass spectrometry on a hybrid instrument. Rapid Commun. Mass Spectrom. 1989, 3 (7), 217-21.
-
(1989)
Rapid Commun. Mass Spectrom
, vol.3
, Issue.7
, pp. 217-221
-
-
Thorne, G.C.1
Gaskell, S.J.2
-
34
-
-
0026570099
-
Intramolecular oxygen-18 isotopic exchange in the gas-phase observed during the tandem mass-spectrometric analysis of peptides
-
Ballard, K. D.; Gaskell, S. J. Intramolecular oxygen-18 isotopic exchange in the gas-phase observed during the tandem mass-spectrometric analysis of peptides. J. Am. Chem. Soc. 1992, 114 (1), 64-71.
-
(1992)
J. Am. Chem. Soc
, vol.114
, Issue.1
, pp. 64-71
-
-
Ballard, K.D.1
Gaskell, S.J.2
-
35
-
-
0030063262
-
Effect of the position of a basic amino acid on C-terminal rearrangement of protonated peptides upon collision-induced dissociation
-
Gonzalez, J.; Besada, V.; Garay, H.; Reyes, O.; Padron, G.; Tambara, Y.; Takao, T.; Shimonishi, Y. Effect of the position of a basic amino acid on C-terminal rearrangement of protonated peptides upon collision-induced dissociation. J. Mass Spectrom. 1996, 31 (2), 150-158.
-
(1996)
J. Mass Spectrom
, vol.31
, Issue.2
, pp. 150-158
-
-
Gonzalez, J.1
Besada, V.2
Garay, H.3
Reyes, O.4
Padron, G.5
Tambara, Y.6
Takao, T.7
Shimonishi, Y.8
-
36
-
-
0033538311
-
Influence of secondary structure on the fragmentation of protonated peptides
-
Tsaprailis, G.; Nair, H.; Somogyi, A.; Wysocki, V. H.; Zhong, W. Q.; Futrell, J. H.; Summerfield, S. G.; Gaskell, S. J. Influence of secondary structure on the fragmentation of protonated peptides. J. Am. Chem. Soc. 1999, 121 (22), 5142-5154.
-
(1999)
J. Am. Chem. Soc
, vol.121
, Issue.22
, pp. 5142-5154
-
-
Tsaprailis, G.1
Nair, H.2
Somogyi, A.3
Wysocki, V.H.4
Zhong, W.Q.5
Futrell, J.H.6
Summerfield, S.G.7
Gaskell, S.J.8
-
37
-
-
0030037157
-
Secondary interactions affecting the dissociation patterns of arginine-containing peptide ions
-
Vachet, R. W.; Asam, M. R.; Glish, G. L. Secondary interactions affecting the dissociation patterns of arginine-containing peptide ions. J. Am. Chem. Soc. 1996, 118 (26), 6252-6256.
-
(1996)
J. Am. Chem. Soc
, vol.118
, Issue.26
, pp. 6252-6256
-
-
Vachet, R.W.1
Asam, M.R.2
Glish, G.L.3
-
38
-
-
0031106849
-
A mechanism for the loss of 60 u from peptides containing an arginine residue at the C-terminus
-
Deery, M. J.; Summerfield, S. G.; Buzy, A.; Jennings, K. R. A mechanism for the loss of 60 u from peptides containing an arginine residue at the C-terminus. J. Am. Soc. Mass Spectrom. 1997, 8 (3), 253-261.
-
(1997)
J. Am. Soc. Mass Spectrom
, vol.8
, Issue.3
, pp. 253-261
-
-
Deery, M.J.1
Summerfield, S.G.2
Buzy, A.3
Jennings, K.R.4
-
39
-
-
0031444782
-
Improving mass spectrometric sequencing of arginine-containing peptides by derivatization with acetylacetone
-
Dikler, S.; Kelly, J. W.; Russell, D. H. Improving mass spectrometric sequencing of arginine-containing peptides by derivatization with acetylacetone. J. Mass Spectrom. 1997, 32 (12), 1337-1349.
-
(1997)
J. Mass Spectrom
, vol.32
, Issue.12
, pp. 1337-1349
-
-
Dikler, S.1
Kelly, J.W.2
Russell, D.H.3
-
40
-
-
0034582526
-
Novel rearranged ions observed for protonated peptides via metastable decomposition in matrix-assisted laser desorption/ionization time-of-flight mass spectrometry
-
Fang, S. P.; Takao, T.; Satomi, Y.; Mo, W. J.; Shimonishi, Y. Novel rearranged ions observed for protonated peptides via metastable decomposition in matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. J. Am. Soc. Mass Spectrom. 2000, 11 (4), 345-351.
-
(2000)
J. Am. Soc. Mass Spectrom
, vol.11
, Issue.4
, pp. 345-351
-
-
Fang, S.P.1
Takao, T.2
Satomi, Y.3
Mo, W.J.4
Shimonishi, Y.5
-
41
-
-
34248547436
-
+ ions in a QqTOF mass spectrometer
-
+ ions in a QqTOF mass spectrometer. J. Am. Soc. Mass Spectrom. 2007, 18 (6), 1024-1037.
-
(2007)
J. Am. Soc. Mass Spectrom
, vol.18
, Issue.6
, pp. 1024-1037
-
-
She, Y.-M.1
Krokhin, O.2
Spicer, V.3
Loboda, A.4
Garland, G.5
Ens, W.6
Standing, K.G.7
Westmore, J.B.8
-
42
-
-
0024083279
-
Daughter ion mass-spectra from cationized molecules of small oligopeptides in a reflecting time-of-flight mass-spectrometer
-
Tang, X. J.; Ens, W.; Standing, K. G.; Westmore, J. B. Daughter ion mass-spectra from cationized molecules of small oligopeptides in a reflecting time-of-flight mass-spectrometer. Anal. Chem. 1988, 60 (17), 1791-1799.
-
(1988)
Anal. Chem
, vol.60
, Issue.17
, pp. 1791-1799
-
-
Tang, X.J.1
Ens, W.2
Standing, K.G.3
Westmore, J.B.4
-
43
-
-
0024286528
-
Linked scan investigation of peptide degradation initiated by liquid secondary ion mass-spectrometry
-
Renner, D.; Spiteller, G. Linked scan investigation of peptide degradation initiated by liquid secondary ion mass-spectrometry. Biomed. Environ. Mass Spectrom. 1988, 15 (2), 75-77.
-
(1988)
Biomed. Environ. Mass Spectrom
, vol.15
, Issue.2
, pp. 75-77
-
-
Renner, D.1
Spiteller, G.2
-
44
-
-
0013619903
-
Metal ion-peptide interactions in the gas phase: A tandem mass spectrometry study of alkali metal cationized peptides
-
Grese, R. P.; Cerny, R. L.; Gross, M. L. Metal ion-peptide interactions in the gas phase: a tandem mass spectrometry study of alkali metal cationized peptides. J. Am. Chem. Soc. 1989, 111 (8), 2835-42.
-
(1989)
J. Am. Chem. Soc
, vol.111
, Issue.8
, pp. 2835-2842
-
-
Grese, R.P.1
Cerny, R.L.2
Gross, M.L.3
-
45
-
-
0024997675
-
Gas-phase interactions of lithium ions and dipeptides
-
Grese, R. P.; Gross, M. L. Gas-phase interactions of lithium ions and dipeptides. J. Am. Chem. Soc. 1990, 112 (13), 5098-104.
-
(1990)
J. Am. Chem. Soc
, vol.112
, Issue.13
, pp. 5098-5104
-
-
Grese, R.P.1
Gross, M.L.2
|