메뉴 건너뛰기




Volumn 6, Issue , 2008, Pages

In-depth, high-accuracy proteomics of sea urchin tooth organic matrix

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; APROTININ; GLYCINE; PROLINE;

EID: 58149489223     PISSN: None     EISSN: 14775956     Source Type: Journal    
DOI: 10.1186/1477-5956-6-33     Document Type: Article
Times cited : (64)

References (43)
  • 1
    • 0015977274 scopus 로고
    • Ultrastructure and growth of the sea urchin tooth
    • 10.1007/BF02060296
    • Kniprath E Ultrastructure and growth of the sea urchin tooth Calc Tiss Res 1974, 14:211-228 10.1007/BF02060296
    • (1974) Calc Tiss Res , vol.14 , pp. 211-228
    • Kniprath, E.1
  • 2
    • 34250126042 scopus 로고
    • Ultrastructural investigation of matrix-mediated biomineralization in echinoids
    • 10.1007/BF00312044
    • Märkel K Röser U Mackenstedt U Klostermann M Ultrastructural investigation of matrix-mediated biomineralization in echinoids Zoomorphology 1986, 106:232-243 10.1007/BF00312044
    • (1986) Zoomorphology , vol.106 , pp. 232-243
    • Märkel, K.1    Röser, U.2    Mackenstedt, U.3    Klostermann, M.4
  • 3
    • 0002684289 scopus 로고
    • On the ultrastructure and the supposed function of the mineralizing matrix coat of sea urchins (Echinodermata, Echinoidea)
    • 10.1007/BF00312313
    • Märkel K Röser U Stauber M On the ultrastructure and the supposed function of the mineralizing matrix coat of sea urchins (Echinodermata, Echinoidea) Zoomorphology 1989, 109:79-87 10.1007/ BF00312313
    • (1989) Zoomorphology , vol.109 , pp. 79-87
    • Märkel, K.1    Röser, U.2    Stauber, M.3
  • 4
    • 0344960504 scopus 로고
    • Zur funktionellen Anatomie der Seeigelzähne (Echinodermata, Echinoidea)
    • 10.1007/BF00401492
    • Märkel K Gorny P Zur funktionellen Anatomie der Seeigelzähne (Echinodermata, Echinoidea) Z Morph Tiere 1973, 75:223-242 10.1007/ BF00401492
    • (1973) Z Morph Tiere , vol.75 , pp. 223-242
    • Märkel, K.1    Gorny, P.2
  • 5
  • 6
    • 0031589931 scopus 로고    scopus 로고
    • Design strategies of sea urchin teeth: Structure, composition and micromechanical relations to function
    • 1691937 9163824 10.1098/rstb.1997.0034
    • Wang RZ Addadi L Weiner S Design strategies of sea urchin teeth: structure, composition and micromechanical relations to function Philos Trans R Soc Lond B Biol Sci 1997, 352(1352):469-480 1691937 9163824 10.1098/rstb.1997.0034
    • (1997) Philos Trans R Soc Lond B Biol Sci , vol.352 , Issue.1352 , pp. 469-480
    • Wang, R.Z.1    Addadi, L.2    Weiner, S.3
  • 7
    • 35549005048 scopus 로고    scopus 로고
    • Mineral deposition and crystal growth in the continuously forming teeth of sea urchins
    • 10.1002/adfm.200700234
    • Ma Y Weiner S Addadi L Mineral deposition and crystal growth in the continuously forming teeth of sea urchins Adv Funct Mater 2007, 17:2693-2700 10.1002/adfm.200700234
    • (2007) Adv Funct Mater , vol.17 , pp. 2693-2700
    • Ma, Y.1    Weiner, S.2    Addadi, L.3
  • 8
    • 0022053850 scopus 로고
    • Organic matrix-like macromolecules associated with the mineral phase of sea urchin skeletal plates and teeth
    • 10.1002/jez.1402340103 3989499
    • Weiner S Organic matrix-like macromolecules associated with the mineral phase of sea urchin skeletal plates and teeth J Exp Zool 1985, 234:7-15 10.1002/jez.1402340103 3989499
    • (1985) J Exp Zool , vol.234 , pp. 7-15
    • Weiner, S.1
  • 9
    • 0022790880 scopus 로고
    • Matrix proteins of the teeth of the sea urchin Lytechinus variegatus
    • 10.1002/jez.1402400106 3095485
    • Veis DJ Albinger TM Clohisy J Rahima M Sabsay B Veis A Matrix proteins of the teeth of the sea urchin Lytechinus variegatus J Exp Zool 1986, 240:35-46 10.1002/jez.1402400106 3095485
    • (1986) J Exp Zool , vol.240 , pp. 35-46
    • Veis, D.J.1    Albinger, T.M.2    Clohisy, J.3    Rahima, M.4    Sabsay, B.5    Veis, A.6
  • 10
    • 0036849044 scopus 로고    scopus 로고
    • Mineral-related proteins of sea urchin teeth: Lytechinus varegatus
    • 10.1002/jemt.10216 12430165
    • Veis A Barss J Dahl T Rahima M Stock S Mineral-related proteins of sea urchin teeth: Lytechinus varegatus Microsc Res Tech 2002, 59:342-351 10.1002/jemt.10216 12430165
    • (2002) Microsc Res Tech , vol.59 , pp. 342-351
    • Veis, A.1    Barss, J.2    Dahl, T.3    Rahima, M.4    Stock, S.5
  • 11
    • 34547817033 scopus 로고    scopus 로고
    • The proteome of the developing tooth of the sea urchin, Lytechinus variegatus: Mortalin is a constituent of the developing cell cyncytium
    • 10.1002/jez.b.21159
    • Alvares K Dixit SN Lux E Barss J Veis A The proteome of the developing tooth of the sea urchin, Lytechinus variegatus: Mortalin is a constituent of the developing cell cyncytium J Exp Zool 2007, 308B:357-370 10.1002/jez.b.21159
    • (2007) J Exp Zool , vol.308 B , pp. 357-370
    • Alvares, K.1    Dixit, S.N.2    Lux, E.3    Barss, J.4    Veis, A.5
  • 12
    • 0022485798 scopus 로고
    • Analysis and function of organic matrix from sea urchin test
    • 10.1002/jez.1402400109
    • Swift DM Sikes CS Wheeler AP Analysis and function of organic matrix from sea urchin test J Exp Zool 1986, 240:65-73 10.1002/jez.1402400109
    • (1986) J Exp Zool , vol.240 , pp. 65-73
    • Swift, D.M.1    Sikes, C.S.2    Wheeler, A.P.3
  • 13
    • 0001255053 scopus 로고
    • Interactions of sea urchin skeleton macromolecules with growing calcite crystals - A study of intracrystalline proteins
    • 10.1038/331546a0
    • Berman A Addadi L Weiner S Interactions of sea urchin skeleton macromolecules with growing calcite crystals - a study of intracrystalline proteins Nature 1988, 331:546-548 10.1038/331546a0
    • (1988) Nature , vol.331 , pp. 546-548
    • Berman, A.1    Addadi, L.2    Weiner, S.3
  • 14
    • 0000163506 scopus 로고
    • Intercalation of sea urchin proteins and calcite: Study of a crystalline composite material
    • 10.1126/science.250.4981.664 17810868
    • Berman A Addadi L Kvick A Leiserowitz L Nelson M Weiner S Intercalation of sea urchin proteins and calcite: Study of a crystalline composite material Science 1990, 250:664-667 10.1126/science.250.4981.664 17810868
    • (1990) Science , vol.250 , pp. 664-667
    • Berman, A.1    Addadi, L.2    Kvick, A.3    Leiserowitz, L.4    Nelson, M.5    Weiner, S.6
  • 15
    • 0023258292 scopus 로고
    • A lineage-specific gene encoding a major matrix protein of the sea urchin embryo spicule
    • 10.1016/0012-1606(87)90253-3 3556766
    • Benson S Sucov H Stephens L Davidson E Wilt FH A lineage-specific gene encoding a major matrix protein of the sea urchin embryo spicule Dev Biol 1987, 120:499-506 10.1016/0012-1606(87)90253-3 3556766
    • (1987) Dev Biol , vol.120 , pp. 499-506
    • Benson, S.1    Sucov, H.2    Stephens, L.3    Davidson, E.4    Wilt, F.H.5
  • 16
    • 0026006465 scopus 로고
    • Characterization and expression of a gene encoding a 30.6 kDa Strongylocentrotus purpuratus spicule matrix protein
    • 10.1016/0012-1606(91)90291-A 1717322
    • George NC Killian CE Wilt FH Characterization and expression of a gene encoding a 30.6 kDa Strongylocentrotus purpuratus spicule matrix protein Dev Biol 1991, 147(2):334-342 10.1016/0012-1606(91)90291-A 1717322
    • (1991) Dev Biol , vol.147 , Issue.2 , pp. 334-342
    • George, N.C.1    Killian, C.E.2    Wilt, F.H.3
  • 17
    • 0032859531 scopus 로고    scopus 로고
    • Ultrastructural localization of proteins involved in sea urchin biomineralization
    • 10449540
    • Ameye L Hermann R Killian C Wilt F Dubois P Ultrastructural localization of proteins involved in sea urchin biomineralization J Histochem Cytochem 1999, 47:1189-1200 10449540
    • (1999) J Histochem Cytochem , vol.47 , pp. 1189-1200
    • Ameye, L.1    Hermann, R.2    Killian, C.3    Wilt, F.4    Dubois, P.5
  • 18
    • 33750995860 scopus 로고    scopus 로고
    • The genome of the sea urchin Strongylocentrotus purpuratus
    • The Sea Urchin Genome Sequencing Consortium 10.1126/science.1133609 17095691
    • The Sea Urchin Genome Sequencing Consortium The genome of the sea urchin Strongylocentrotus purpuratus Science 2006, 314:941-952 10.1126/ science.1133609 17095691
    • (2006) Science , vol.314 , pp. 941-952
  • 21
    • 34548178909 scopus 로고    scopus 로고
    • In-gel digestion for mass spectrometric characterization of proteins and proteomes
    • 10.1038/nprot.2006.468 17406544
    • Shevchenko A Tomas H Havliè J Olsen JV Mann M In-gel digestion for mass spectrometric characterization of proteins and proteomes Nature Protocols 2006, 1:2856-2860 10.1038/nprot.2006.468 17406544
    • (2006) Nature Protocols , vol.1 , pp. 2856-2860
    • Shevchenko, A.1    Tomas, H.2    Havliè, J.3    Olsen, J.V.4    Mann, M.5
  • 22
    • 0037317228 scopus 로고    scopus 로고
    • Stop and Go extraction tips for matrix-assisted laser desorption/ ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics
    • 10.1021/ac026117i 12585499
    • Rappsilber J Ishihama Y Mann M Stop and Go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics Anal Chem 2003, 75:663-670 10.1021/ ac026117i 12585499
    • (2003) Anal Chem , vol.75 , pp. 663-670
    • Rappsilber, J.1    Ishihama, Y.2    Mann, M.3
  • 23
    • 4544370533 scopus 로고    scopus 로고
    • Improved peptide identification in proteomics by two consecutive stages of mass spectrometric fragmentation
    • 518757 15347803 10.1073/pnas.0405549101
    • Olsen JV Mann M Improved peptide identification in proteomics by two consecutive stages of mass spectrometric fragmentation Proc Natl Acad Sci USA 2004, 101:13417-13422 518757 15347803 10.1073/pnas.0405549101
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 13417-13422
    • Olsen, J.V.1    Mann, M.2
  • 26
    • 34548858215 scopus 로고    scopus 로고
    • A global view of sea urchin expression in lithium and zinc treated sea urchin embryos: New components of gene regulatory networks
    • 1929154 17506889 10.1186/gb-2007-8-5-r85
    • Poustka AJ Kühn A Groth D Weise V Yaguchi S Burke RD Herwig R Lehrach H Panopoulou G A global view of sea urchin expression in lithium and zinc treated sea urchin embryos: New components of gene regulatory networks Genome Biol 2007, 8:R85 1929154 17506889 10.1186/gb-2007-8-5-r85
    • (2007) Genome Biol , vol.8
    • Poustka, A.J.1    Kühn, A.2    Groth, D.3    Weise, V.4    Yaguchi, S.5    Burke, R.D.6    Herwig, R.7    Lehrach, H.8    Panopoulou, G.9
  • 27
    • 26844559000 scopus 로고    scopus 로고
    • Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein
    • 10.1074/mcp.M500061-MCP200
    • Ishihama Y Oda Y Tabata T Sato T Nagasu T Rappsilber J Mann M Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein Mol Cell Proteom 2005, 4:1265-1272 10.1074/ mcp.M500061-MCP200
    • (2005) Mol Cell Proteom , vol.4 , pp. 1265-1272
    • Ishihama, Y.1    Oda, Y.2    Tabata, T.3    Sato, T.4    Nagasu, T.5    Rappsilber, J.6    Mann, M.7
  • 28
    • 3242887157 scopus 로고    scopus 로고
    • CD-Search: Protein domain annotations on the fly
    • 441592 15215404 10.1093/nar/gkh454
    • Marchler-Bauer A Bryant SH CD-Search: Protein domain annotations on the fly Nucl Acids Res 2004, 32:W327-W331 441592 15215404 10.1093/nar/gkh454
    • (2004) Nucl Acids Res , vol.32
    • Marchler-Bauer, A.1    Bryant, S.H.2
  • 29
    • 51249103572 scopus 로고    scopus 로고
    • The sea urchin (Strongylocentrotus purpuratus) test and spine proteomes
    • 2527298 18694502 10.1186/1477-5956-6-22
    • Mann K Poustka AJ Mann M The sea urchin (Strongylocentrotus purpuratus) test and spine proteomes Proteome Sci 2008, 6:22 2527298 18694502 10.1186/1477-5956-6-22
    • (2008) Proteome Sci , vol.6 , pp. 22
    • Mann, K.1    Poustka, A.J.2    Mann, M.3
  • 31
    • 22144450268 scopus 로고    scopus 로고
    • P16 is an essential regulator of skeletogenesis in the sea urchin embryo
    • 10.1016/j.ydbio.2005.02.037 15935341
    • Cheers MS Ettensohn CA P16 is an essential regulator of skeletogenesis in the sea urchin embryo Dev Biol 2005, 283:384-396 10.1016/ j.ydbio.2005.02.037 15935341
    • (2005) Dev Biol , vol.283 , pp. 384-396
    • Cheers, M.S.1    Ettensohn, C.A.2
  • 32
    • 0024655827 scopus 로고
    • Inhibitors of metalloendoproteases block spiculogenesis in sea urchin primary mesenchyme cells
    • 10.1016/0014-4827(89)90110-9
    • Roe JL Park HR Strittmatter WJ Lennarz WJ Inhibitors of metalloendoproteases block spiculogenesis in sea urchin primary mesenchyme cells Ex Cell Res 1989, 181:542-550 10.1016/ 0014-4827(89)90110-9
    • (1989) Ex Cell Res , vol.181 , pp. 542-550
    • Roe, J.L.1    Park, H.R.2    Strittmatter, W.J.3    Lennarz, W.J.4
  • 33
    • 0032053841 scopus 로고    scopus 로고
    • Matrix metalloproteinase inhibitors disrupt spicule formation by primary mesenchyme cells in the sea urchin embryo
    • 10.1006/dbio.1998.8857 9527883
    • Ingersoll EP Wilt FH Matrix metalloproteinase inhibitors disrupt spicule formation by primary mesenchyme cells in the sea urchin embryo Dev Biol 1998, 196:95-106 10.1006/dbio.1998.8857 9527883
    • (1998) Dev Biol , vol.196 , pp. 95-106
    • Ingersoll, E.P.1    Wilt, F.H.2
  • 34
    • 0346264787 scopus 로고    scopus 로고
    • Ultrastructural localization of spicule matrix proteins in normal and metalloproteinase inhibitor-treated sea urchin primary mesenchyme cells
    • 10.1002/jez.a.10316
    • Ingersoll EP McDonald KL Wilt FH Ultrastructural localization of spicule matrix proteins in normal and metalloproteinase inhibitor-treated sea urchin primary mesenchyme cells J Exp Zool 2003, 300A:101-112 10.1002/ jez.a.10316
    • (2003) J Exp Zool , vol.300 A , pp. 101-112
    • Ingersoll, E.P.1    McDonald, K.L.2    Wilt, F.H.3
  • 35
    • 43049116104 scopus 로고    scopus 로고
    • The dynamics of secretion during sea urchin embryonic skeleton formation
    • 2444014 18355808 10.1016/j.yexcr.2008.01.036
    • Wilt FH Killian CE Hamilton P Croker L The dynamics of secretion during sea urchin embryonic skeleton formation Exp Cell Res 2008, 314:1744-1752 2444014 18355808 10.1016/j.yexcr.2008.01.036
    • (2008) Exp Cell Res , vol.314 , pp. 1744-1752
    • Wilt, F.H.1    Killian, C.E.2    Hamilton, P.3    Croker, L.4
  • 37
    • 0141924547 scopus 로고    scopus 로고
    • Control of crystal size and lattice formation by starmaker in otolith biomineralization
    • 10.1126/science.1088443 14551434
    • Söllner C Burghammer M Busch-Nentwich E Berger J Schwarz H Riekel C Nicolson T Control of crystal size and lattice formation by starmaker in otolith biomineralization Science 2003, 302:282-286 10.1126/ science.1088443 14551434
    • (2003) Science , vol.302 , pp. 282-286
    • Söllner, C.1    Burghammer, M.2    Busch-Nentwich, E.3    Berger, J.4    Schwarz, H.5    Riekel, C.6    Nicolson, T.7
  • 38
    • 0037027957 scopus 로고    scopus 로고
    • Identification of a "glycine-loop"-like structure in the 34aa Pro, Gly, Met repeat domain of the biomineral-associated protein, PM27
    • 10.1002/bip.10274 12389216
    • Wustman BA Santos R Zhang B Evans JS Identification of a "glycine-loop"-like structure in the 34aa Pro, Gly, Met repeat domain of the biomineral-associated protein, PM27 Biopolymers 2002, 65:362-372 10.1002/bip.10274 12389216
    • (2002) Biopolymers , vol.65 , pp. 362-372
    • Wustman, B.A.1    Santos, R.2    Zhang, B.3    Evans, J.S.4
  • 39
    • 0034327881 scopus 로고    scopus 로고
    • Model peptide studies of sequence repeats derived from the intracrystaline biomineralization protein SM50. II. Pro, Asn-rich tandem repeats
    • 10.1002/1097-0282(200011)54:6<464::AID-BIP90>3.0.CO;2-N 10951331
    • Zhang B Xu G Evans JS Model peptide studies of sequence repeats derived from the intracrystaline biomineralization protein SM50. II. Pro, Asn-rich tandem repeats Biopolymers 2000, 54:464-475 10.1002/ 1097-0282(200011)54:6<464::AID-BIP90>3.0.CO;2-N 10951331
    • (2000) Biopolymers , vol.54 , pp. 464-475
    • Zhang, B.1    Xu, G.2    Evans, J.S.3
  • 40
    • 12244259068 scopus 로고    scopus 로고
    • Identification and developmental expression of new biomineralization proteins in the sea urchin Strongylocentrotus purpuratus
    • 10.1007/s00427-002-0261-0 12373587
    • Illies MR Peeler MT Dechtiaruk AM Ettensohn CA Identification and developmental expression of new biomineralization proteins in the sea urchin Strongylocentrotus purpuratus Dev Genes Evol 2002, 212:419-431 10.1007/s00427-002-0261-0 12373587
    • (2002) Dev Genes Evol , vol.212 , pp. 419-431
    • Illies, M.R.1    Peeler, M.T.2    Dechtiaruk, A.M.3    Ettensohn, C.A.4
  • 41
    • 33646189382 scopus 로고    scopus 로고
    • Cis_regulatory control of cyclophilin, a member of the ETS-DRI skeletogenic gene battery in the sea urchin embryo
    • 10.1016/j.ydbio.2006.02.024 16574094
    • Amore G Davidson EH Cis_regulatory control of cyclophilin, a member of the ETS-DRI skeletogenic gene battery in the sea urchin embryo Dev Biol 2006, 293:555-564 10.1016/j.ydbio.2006.02.024 16574094
    • (2006) Dev Biol , vol.293 , pp. 555-564
    • Amore, G.1    Davidson, E.H.2
  • 42
    • 33750682358 scopus 로고    scopus 로고
    • Beyond the walls of the nucleus: The role of histones in cellular signaling and innate immunity
    • 10.1139/O06-082 16936831
    • Parseghian MH Luhrs KA Beyond the walls of the nucleus: The role of histones in cellular signaling and innate immunity Biochem Cell Biol 2006, 84:589-604 10.1139/O06-082 16936831
    • (2006) Biochem Cell Biol , vol.84 , pp. 589-604
    • Parseghian, M.H.1    Luhrs, K.A.2
  • 43
    • 33746001133 scopus 로고    scopus 로고
    • Proteomic analysis of the acid-soluble organic matrix of the chicken calcified eggshell layer
    • 10.1002/pmic.200600120 16767793
    • Mann K Macek B Olsen JV Proteomic analysis of the acid-soluble organic matrix of the chicken calcified eggshell layer Proteomics 2006, 6:3801-3810 10.1002/pmic.200600120 16767793
    • (2006) Proteomics , vol.6 , pp. 3801-3810
    • Mann, K.1    Macek, B.2    Olsen, J.V.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.