Gene-wide histone acetylation at the yeast INO1 requires the transcriptional activator Ino2p

Biochemical and Biophysical Research Communications

Volumn 391, Issue 2, 2010, Pages 1285-1290

  Esposito, Michelle ^a   Konarzewska, Paulina ^a   Odeyale, Oluwafemi ^a   Shen, Chang Hui ^a,b  

^a CITY UNIVERSITY OF NEW YORK   (United States)

^b CITY UNIVERSITY OF NEW YORK   (United States)

Author keywords

Activator dependent histone acetylation; Chromatin immunoprecipitation; Gene activation; INO1; INO2; Nucleosome density

Indexed keywords

HISTONE; HISTONE H3; HISTONE H4; PHOSPHATIDYLINOSITOL; PROTEIN; PROTEIN INO2P; UNCLASSIFIED DRUG;

ACETYLATION; ARTICLE; CHROMATIN ASSEMBLY AND DISASSEMBLY; FUNGAL GENE; GENE INDUCTION; INO1 GENE; NONHUMAN; NUCLEOSOME; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN MODIFICATION; TRANSCRIPTION INITIATION; YEAST;

ACETYLATION; BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTORS; CHROMATIN ASSEMBLY AND DISASSEMBLY; GENE EXPRESSION REGULATION, FUNGAL; HISTONES; MYO-INOSITOL-1-PHOSPHATE SYNTHASE; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TRANSCRIPTIONAL ACTIVATION;

EID: 73449145243     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2009.12.063     Document Type: Article

References (29)

1. Kornberg R.D., and Lorch Y. Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome. Cell 98 (1999) 285-294
2. Neely K.E., and Workman J.L. The complexity of chromatin remodeling and its links to cancer. Biochim. Biophys. Acta 1603 (2002) 19-29
3. Strahl B.D., and Allis C.D. The language of covalent histone modifications. Nature 403 (2000) 41-45
4. Angelov D., Vitolo J.M., Mutskov V., Dimitrov S., and Hayes J.J. Preferential interaction of the core histone tail domains with linker DNA. Proc. Natl. Acad. Sci. USA 98 (2001) 6599-6604
5. Vettese-Dadey M., Grant P.A., Hebbes T.R., Crane-Robinson C., Allis C.D., and Workman J.L. Acetylation of histone H4 plays a primary role in enhancing transcription factor binding to nucleosomal DNA in vitro. EMBO J. 15 (1996) 2508-2518
6. Lopes J.M., Hirsch J.P., Chorgo P.A., Schulze K.L., and Henry S.A. Analysis of sequences in the INO1 promoter that are involved in its regulation by phospholipid precursors. Nucleic Acids Res. 19 (1991) 1687-1693
7. INO element in the promoters of the INO1 and CHO2 genes of yeast. Yeast 12 (1996) 653-665
8. Schwank S., Ebbert R., Rautenstrauss K., Schweizer E., and Schuller H.J. Yeast transcriptional activator INO2 interacts as an Ino2p/Ino4p basic helix-loop-helix heteromeric complex with the inositol/choline-responsive element necessary for expression of phospholipid biosynthetic genes in Saccharomyces cerevisiae. Nucleic Acids Res. 23 (1995) 230-237
9. Ambroziak J., and Henry S.A. INO2 and INO4 gene products positive regulators of phospholipid biosynthesis in Saccharomyces cerevisiae form a complex that binds to the INO1 promoter. J. Biol. Chem. 269 (1994) 15344-15349
10. Dasgupta A., Juedes S.A., Sprouse R.O., and Auble D.T. Mot1-mediated control of transcription complex assembly and activity. EMBO J. 24 (2005) 1717-1729
11. Brickner J.H., and Walter P. Gene recruitment of the activated INO1 locus to the nuclear membrane. PLoS Biol. 2 (2004) e342
12. Heyken W.T., Repenning A., Kumme J., and Schüller H.J. Constitutive expression of yeast phospholipid biosynthetic genes by variants of Ino2 activator defective for interaction with Opi1 repressor. Mol. Microbiol. 56 (2005) 696-707
13. Ford J., Odeyale O., Eskandar A., Kouba N., and Shen C.-H. A SWI/SNF- and INO80-dependent nucleosome movement at the INO1 promoter. Biochem. Biophys. Res. Commun. 361 (2007) 974-979
14. Ford J., Odeyale O., and Shen C.-H. Activator-dependent recruitment of SWI/SNF and INO80 during INO1 activation. Biochem. Biophys. Res. Commun. 373 (2008) 602-606
15. Lo W.S., Duggan L., Emre N.C., Belotserkovskya R., Lane W.S., Shiekhattar R., and Berger S.L. Snf1 - a histone kinase that works in concert with the histone acetyltransferase Gcn5 to regulate transcription. Science 293 (2001) 1142-1146
16. Lo W.S., Gamache E.R., Henry K.W., Yang D., Pillus L., and Berger S.L. Histone H3 phosphorylation can promote TBP recruitment through distinct promoter-specific mechanisms. EMBO J. 24 (2005) 997-1008
17. Elkhaimi M., Kaadige M.R., Kamath D., Jackson J.C., Biliran H., and Lopes J.M. Combinatorial regulation of phospholipid biosynthetic gene expressed by the UME6, SIN3 and RPD3 genes. Nucleic Acids Res. 28 (2000) 3160-3167
18. Bernstein B.E., Tong J.K., and Schreiber S.L. Genomewide studies of histone deactylase function in yeast. Proc. Natl. Acad. Sci. USA 97 (2000) 13708-13713
19. Kadosh D., and Struhl K. Repression by Ume6 involves recruitment of a complex containing Sin3 corepressor and Rpd3 histone deactylase to target promoters. Cell 89 (1997) 365-371
20. Kadosh D., and Struhl K. Targeted recruitment of the Sin3-Rpd3 histone deactylase complex generates a highly localized domain of repressed chromatin in vivo. Mol. Cell. Biol. 18 (1998) 5121-5127
21. Shen C.-H., Leblanc B.P., Alfieri J.A., and Clark D.J. Remodeling of yeast CUP1 chromatin involves activator-dependent repositioning of nucleosomes over the entire gene and flanking sequences. Mol. Cell. Biol. 21 (2001) 534-547
22. Govind C.K., Zhang F., Qiu H., Hofmeyer K., and Hinnebusch A.G. Gcn5 promotes acetylation, eviction, and methylation of nucleosomes in transcribed coding regions. Mol. Cell 25 (2007) 31-42
23. Grunstein M. Histone acetylation in chromatin structure and transcription. Nature 389 (1997) 349-352
24. Struhl K. Histone acetylation and transcriptional regulatory mechanisms. Genes Dev. 12 (1998) 599-606
25. Deckert J., and Struhl K. Histone acetylation at promoters is differentially affected by specific activators and repressors. Mol. Cell. Biol. 21 (2001) 2726-2735
26. Rundlett S.E., Carmen A.A., Suka N., Turner B.M., and Grunstein M. Transcriptional repression by UME6 involves deacetylation of lysine 5 of histoneH4 by RPD3. Nature 392 (1998) 831-835
27. Peterson C.L., and Workman J.L. Promoter targeting and chromatin remodeling by the SWI/SNF complex. Curr. Opin. Genet. Dev. 10 (2000) 187-192
28. Shen C.-H., Leblanc B., Neal C., Akhavan R., and Clark D. Targeted histone acetylation at the yeast CUP1 promoter requires the transcriptional activator, the TATA boxes, and the putative histone acetylase encoded by SPT 10. Mol. Cell. Biol. 22 (2002) 6406-6416
29. Kim Y., McLaughlin N., Lindstrom K., Tsukiyama T., and Clark D.J. Activation of Saccharomyces cerevisiae HIS3 results in Gcn4p-dependent, SWI/SNF-dependent mobilization of nucleosomes over the entire gene. Mol. Cell. Biol. 26 (2006) 8607-8622