메뉴 건너뛰기




Volumn 361, Issue 4, 2007, Pages 974-979

A SWI/SNF- and INO80-dependent nucleosome movement at the INO1 promoter

Author keywords

Chromatin structure; Indirect end labeling; INO1; INO80; Local nucleosome movement; SWI SNF

Indexed keywords

HISTONE DEACETYLASE; PROTEIN SWI; TRANSCRIPTION FACTOR SNF;

EID: 34547924510     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2007.07.109     Document Type: Article
Times cited : (26)

References (37)
  • 1
    • 33947199781 scopus 로고    scopus 로고
    • Synthesis and function of membrane phosphoinositides in budding yeast, Saccharomyces cerevisiae
    • Strahl T., and Thorner J. Synthesis and function of membrane phosphoinositides in budding yeast, Saccharomyces cerevisiae. Biochim. Biophys. Acta 1771 (2007) 353-404
    • (2007) Biochim. Biophys. Acta , vol.1771 , pp. 353-404
    • Strahl, T.1    Thorner, J.2
  • 2
    • 33750264683 scopus 로고    scopus 로고
    • Phosphatidylinositol transfer proteins and cellular nanoreactors for lipid signaling
    • Ile K.E., Schaaf G., and Bankaitis V.A. Phosphatidylinositol transfer proteins and cellular nanoreactors for lipid signaling. Nat. Chem. Biol. 2 (2006) 576-583
    • (2006) Nat. Chem. Biol. , vol.2 , pp. 576-583
    • Ile, K.E.1    Schaaf, G.2    Bankaitis, V.A.3
  • 3
    • 0022799260 scopus 로고
    • Expression of the Saccharomyces cerevisiae inositol-1-phosphate synthase (INO1) gene is regulated by factors that affect phospholipid synthesis
    • Hirsch J.P., and Henry S.A. Expression of the Saccharomyces cerevisiae inositol-1-phosphate synthase (INO1) gene is regulated by factors that affect phospholipid synthesis. Mol. Cell Biol. 6 (1986) 3320-3328
    • (1986) Mol. Cell Biol. , vol.6 , pp. 3320-3328
    • Hirsch, J.P.1    Henry, S.A.2
  • 4
    • 0025755893 scopus 로고
    • Analysis of sequences in the INO1 promoter that are involved in its regulation by phospholipid precursors
    • Lopes J.M., Hirsch J.P., Chorgo P.A., Schulze K.L., and Henry S.A. Analysis of sequences in the INO1 promoter that are involved in its regulation by phospholipid precursors. Nucleic Acids Res. 19 (1991) 1687-1693
    • (1991) Nucleic Acids Res. , vol.19 , pp. 1687-1693
    • Lopes, J.M.1    Hirsch, J.P.2    Chorgo, P.A.3    Schulze, K.L.4    Henry, S.A.5
  • 6
    • 0025880361 scopus 로고
    • Interaction of trans and cis regulatory elements in the INO1 promoter of Saccharomyces cerevisiae
    • Lopes J.M., and Henry S.A. Interaction of trans and cis regulatory elements in the INO1 promoter of Saccharomyces cerevisiae. Nucleic Acids Res. 19 (1991) 3987-3994
    • (1991) Nucleic Acids Res. , vol.19 , pp. 3987-3994
    • Lopes, J.M.1    Henry, S.A.2
  • 7
    • 0028963304 scopus 로고
    • Yeast transcriptional activator INO2 interacts as an Ino2p/Ino4p basic helix-loop-helix heteromeric complex with the inositol/choline-responsive element necessary for expression of phospholipid biosynthetic genes in Sacharromyces cerevisiae
    • Schwank S., Ebbert R., Rautenstrauu K., Schweizer E., and Schuller H.J. Yeast transcriptional activator INO2 interacts as an Ino2p/Ino4p basic helix-loop-helix heteromeric complex with the inositol/choline-responsive element necessary for expression of phospholipid biosynthetic genes in Sacharromyces cerevisiae. Nucleic Acids Res. 23 (1995) 230-237
    • (1995) Nucleic Acids Res. , vol.23 , pp. 230-237
    • Schwank, S.1    Ebbert, R.2    Rautenstrauu, K.3    Schweizer, E.4    Schuller, H.J.5
  • 8
    • 0029149344 scopus 로고
    • DNA binding site of the yeast heteromeric Ino2p/Ino4p basic helix-loop-helix loop transcription factor: structural requirements as defined by saturation mutagenesis
    • Schuller H.J., Richter K., Hoffmann B., Ebbert R., and Schweizer E. DNA binding site of the yeast heteromeric Ino2p/Ino4p basic helix-loop-helix loop transcription factor: structural requirements as defined by saturation mutagenesis. FEBS Lett. 370 (1995) 149-152
    • (1995) FEBS Lett. , vol.370 , pp. 149-152
    • Schuller, H.J.1    Richter, K.2    Hoffmann, B.3    Ebbert, R.4    Schweizer, E.5
  • 9
    • 0028363566 scopus 로고
    • INO2 and INO4 gene products, positive regulators of phospholipid biosynthesis in Saccharomyces cerevisiae, form a complex that binds to the INO1 promoter
    • Ambroziak J., and Henry S.A. INO2 and INO4 gene products, positive regulators of phospholipid biosynthesis in Saccharomyces cerevisiae, form a complex that binds to the INO1 promoter. J. Biol. Chem. 269 (1994) 15344-15349
    • (1994) J. Biol. Chem. , vol.269 , pp. 15344-15349
    • Ambroziak, J.1    Henry, S.A.2
  • 10
    • 0034936617 scopus 로고    scopus 로고
    • The negative regulatory Opi1 of phospholipid biosynthesis in yeast contacts the pleiotropic repressor Sin3 and the transcriptional activator Ino2
    • Wagner C., Dietz M., Wittmann J., Albrecht A., and Schuller H.J. The negative regulatory Opi1 of phospholipid biosynthesis in yeast contacts the pleiotropic repressor Sin3 and the transcriptional activator Ino2. Mol. Microbiol. 44 (2001) 155-166
    • (2001) Mol. Microbiol. , vol.44 , pp. 155-166
    • Wagner, C.1    Dietz, M.2    Wittmann, J.3    Albrecht, A.4    Schuller, H.J.5
  • 11
    • 31044431992 scopus 로고    scopus 로고
    • Analysis of Opi1p repressor mutants
    • Kaadige M.R., and Lopes J.M. Analysis of Opi1p repressor mutants. Curr. Genet. 49 (2006) 30-38
    • (2006) Curr. Genet. , vol.49 , pp. 30-38
    • Kaadige, M.R.1    Lopes, J.M.2
  • 12
    • 17644419063 scopus 로고    scopus 로고
    • Constitutive expression of yeast phospholipid biosynthetic genes by variants of Ino2 activator defective for interaction with Opi1 repressor
    • Heyken W.T., Repenning A., Kumme J., and Schuller H.J. Constitutive expression of yeast phospholipid biosynthetic genes by variants of Ino2 activator defective for interaction with Opi1 repressor. Mol. Microbiol. 56 (2005) 696-707
    • (2005) Mol. Microbiol. , vol.56 , pp. 696-707
    • Heyken, W.T.1    Repenning, A.2    Kumme, J.3    Schuller, H.J.4
  • 13
    • 0034839973 scopus 로고    scopus 로고
    • Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin
    • Suka N., Suka Y., Carmen A.A., Wu J., and Grunstein M. Highly specific antibodies determine histone acetylation site usage in yeast heterochromatin and euchromatin. Mol. Cell 8 (2001) 473-479
    • (2001) Mol. Cell , vol.8 , pp. 473-479
    • Suka, N.1    Suka, Y.2    Carmen, A.A.3    Wu, J.4    Grunstein, M.5
  • 14
    • 0033638105 scopus 로고    scopus 로고
    • Phosphorylation of serine 10 in histone H3 is functionally linked in vitro and in vivo to Gcn5-mediated acetylation at lysine 14
    • Lo W.S., Trievel R.C., Rojas J.R., Duggan L., Hsu J., Allis C.D., Marmorstein R., and Berger S.L. Phosphorylation of serine 10 in histone H3 is functionally linked in vitro and in vivo to Gcn5-mediated acetylation at lysine 14. Mol. Cell 5 (2000) 917-926
    • (2000) Mol. Cell , vol.5 , pp. 917-926
    • Lo, W.S.1    Trievel, R.C.2    Rojas, J.R.3    Duggan, L.4    Hsu, J.5    Allis, C.D.6    Marmorstein, R.7    Berger, S.L.8
  • 15
    • 0035839135 scopus 로고    scopus 로고
    • Snf1 - a histone kinase that works in concert with the histone acetyltransferase Gcn5 to regulate transcription
    • Lo W.S., Duggan L., Emre N.C., Belotserkovskya R., Lane W.S., Shiekhattar R., and Berger S.L. Snf1 - a histone kinase that works in concert with the histone acetyltransferase Gcn5 to regulate transcription. Science 293 (2001) 1142-1146
    • (2001) Science , vol.293 , pp. 1142-1146
    • Lo, W.S.1    Duggan, L.2    Emre, N.C.3    Belotserkovskya, R.4    Lane, W.S.5    Shiekhattar, R.6    Berger, S.L.7
  • 16
    • 16344395502 scopus 로고    scopus 로고
    • Histone H3 phosphorylation can promote TBP recruitment through distinct promoter-specific mechanisms
    • Lo W.S., Gamache E.R., Henry K.W., Yang D., Pillus L., and Berger S.L. Histone H3 phosphorylation can promote TBP recruitment through distinct promoter-specific mechanisms. EMBO J. 24 (2005) 997-1008
    • (2005) EMBO J. , vol.24 , pp. 997-1008
    • Lo, W.S.1    Gamache, E.R.2    Henry, K.W.3    Yang, D.4    Pillus, L.5    Berger, S.L.6
  • 17
    • 0034663636 scopus 로고    scopus 로고
    • Combinatorial regulation of phospholipid biosynthetic gene expressed by the UME6, SIN3 and RPD3 genes
    • Elkhaimi M., Kaadige M.R., Kamath D., Jackson J.C., Biliran H., and Lopes J.M. Combinatorial regulation of phospholipid biosynthetic gene expressed by the UME6, SIN3 and RPD3 genes. Nucleic Acids Res. 28 (2000) 3160-3167
    • (2000) Nucleic Acids Res. , vol.28 , pp. 3160-3167
    • Elkhaimi, M.1    Kaadige, M.R.2    Kamath, D.3    Jackson, J.C.4    Biliran, H.5    Lopes, J.M.6
  • 18
    • 0343924289 scopus 로고    scopus 로고
    • Repression by Ume6 involves recruitment of a complex containing Sin3 corepressor and Rpd3 histone deactylase to target promoters
    • Kadosh D., and Struhl K. Repression by Ume6 involves recruitment of a complex containing Sin3 corepressor and Rpd3 histone deactylase to target promoters. Cell 89 (1997) 365-371
    • (1997) Cell , vol.89 , pp. 365-371
    • Kadosh, D.1    Struhl, K.2
  • 19
    • 0031865050 scopus 로고    scopus 로고
    • Targeted recruitment of the Sin3-Rpd3 histone deactylase complex generates a highly localized domain of repressed chromatin in vivo
    • Kadosh D., and Struhl K. Targeted recruitment of the Sin3-Rpd3 histone deactylase complex generates a highly localized domain of repressed chromatin in vivo. Mol. Cell Biol. 18 (1998) 5121-5127
    • (1998) Mol. Cell Biol. , vol.18 , pp. 5121-5127
    • Kadosh, D.1    Struhl, K.2
  • 20
    • 0029856225 scopus 로고    scopus 로고
    • HDA1 and RPD3 are members of distinct yeast histone deactylase complexes that regulate silencing and transcription
    • Rundlett S.E., Carmen A.A., Kobayashi R., Bavykin S., Turner B.M., and Grunstein M. HDA1 and RPD3 are members of distinct yeast histone deactylase complexes that regulate silencing and transcription. Proc. Natl. Acad. Sci. USA 93 (1996) 14503-14508
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 14503-14508
    • Rundlett, S.E.1    Carmen, A.A.2    Kobayashi, R.3    Bavykin, S.4    Turner, B.M.5    Grunstein, M.6
  • 21
    • 0032560117 scopus 로고    scopus 로고
    • Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3
    • Rundlett S.E., Carmen A.A., Suka N., Turner B.M., and Grunstein M. Transcriptional repression by UME6 involves deacetylation of lysine 5 of histone H4 by RPD3. Nature 392 (1998) 831-835
    • (1998) Nature , vol.392 , pp. 831-835
    • Rundlett, S.E.1    Carmen, A.A.2    Suka, N.3    Turner, B.M.4    Grunstein, M.5
  • 22
    • 0033010289 scopus 로고    scopus 로고
    • The product of the SNF2/SWI2 paralogue INO80 of Saccharomyces cerevisiae required for efficient expression of various yeast structural genes is part of a high-molecular-weight protein complex
    • Ebbert R., Birkmann A., and Schuller H.J. The product of the SNF2/SWI2 paralogue INO80 of Saccharomyces cerevisiae required for efficient expression of various yeast structural genes is part of a high-molecular-weight protein complex. Mol. Microbiol. 32 (1999) 741-751
    • (1999) Mol. Microbiol. , vol.32 , pp. 741-751
    • Ebbert, R.1    Birkmann, A.2    Schuller, H.J.3
  • 23
    • 0026584855 scopus 로고
    • Characterization of the yeast SWI1, SWI2, and SWI3 genes, which encode a global activator of transcription
    • Peterson C.L., and Herskowitz I. Characterization of the yeast SWI1, SWI2, and SWI3 genes, which encode a global activator of transcription. Cell 68 (1992) 573-583
    • (1992) Cell , vol.68 , pp. 573-583
    • Peterson, C.L.1    Herskowitz, I.2
  • 24
    • 0034601464 scopus 로고    scopus 로고
    • A chromatin remodeling complex involved in transcription and DNA processing
    • Shen X., Mizuguchi G., Hamiche A., and Wu C. A chromatin remodeling complex involved in transcription and DNA processing. Nature 406 (2000) 541-544
    • (2000) Nature , vol.406 , pp. 541-544
    • Shen, X.1    Mizuguchi, G.2    Hamiche, A.3    Wu, C.4
  • 25
    • 0037414839 scopus 로고    scopus 로고
    • Modulation of ATP-dependent chromatin-remodeling complexes by inositol polyphosphates
    • Shen X., Xiao H., Ranallo R., Wu W.H., and Wu C. Modulation of ATP-dependent chromatin-remodeling complexes by inositol polyphosphates. Science 299 (2003) 112-114
    • (2003) Science , vol.299 , pp. 112-114
    • Shen, X.1    Xiao, H.2    Ranallo, R.3    Wu, W.H.4    Wu, C.5
  • 26
    • 0035281586 scopus 로고    scopus 로고
    • In vivo chromatin remodeling by yeast ISWI homologs Isw1p and Isw2p
    • Kent N.A., Karabetsou N., Politis P.K., and Mellor J. In vivo chromatin remodeling by yeast ISWI homologs Isw1p and Isw2p. Genes Dev. 15 (2001) 619-626
    • (2001) Genes Dev. , vol.15 , pp. 619-626
    • Kent, N.A.1    Karabetsou, N.2    Politis, P.K.3    Mellor, J.4
  • 27
    • 0034879861 scopus 로고    scopus 로고
    • The Saccharomyces cerevisiae Isw2p-Itc1p complex represses INO1 expression and maintains cell morphology
    • Sugiyama M., and Nikawa J. The Saccharomyces cerevisiae Isw2p-Itc1p complex represses INO1 expression and maintains cell morphology. J. Bacteriol. 183 (2001) 4985-4993
    • (2001) J. Bacteriol. , vol.183 , pp. 4985-4993
    • Sugiyama, M.1    Nikawa, J.2
  • 28
    • 0035168506 scopus 로고    scopus 로고
    • Remodeling of yeast CUP1 chromatin involves activator-dependent repositioning of nucleosomes over the entire gene and flanking sequences
    • Shen C.-H., Leblanc B.P., Alfieri J.A., and Clark D.J. Remodeling of yeast CUP1 chromatin involves activator-dependent repositioning of nucleosomes over the entire gene and flanking sequences. Mol. Cell Biol. 21 (2001) 534-547
    • (2001) Mol. Cell Biol. , vol.21 , pp. 534-547
    • Shen, C.-H.1    Leblanc, B.P.2    Alfieri, J.A.3    Clark, D.J.4
  • 30
    • 0029818842 scopus 로고    scopus 로고
    • The role of phosphatidylcholine biosynthesis in the regulation of the INO1 gene of yeast
    • Griac P., Swede M.J., and Henry S.A. The role of phosphatidylcholine biosynthesis in the regulation of the INO1 gene of yeast. J. Biol. Chem. 271 (1996) 25692-25698
    • (1996) J. Biol. Chem. , vol.271 , pp. 25692-25698
    • Griac, P.1    Swede, M.J.2    Henry, S.A.3
  • 31
    • 0028331723 scopus 로고
    • Isolation and characterization of a mutant of Saccharomyces cerevisiae with pleiotropic deficiencies in transcriptional activation and repression
    • Lamping E., Paltauf F., Henry S.A., and Kohlwein S.D. Isolation and characterization of a mutant of Saccharomyces cerevisiae with pleiotropic deficiencies in transcriptional activation and repression. Genetics 137 (1995) 55-65
    • (1995) Genetics , vol.137 , pp. 55-65
    • Lamping, E.1    Paltauf, F.2    Henry, S.A.3    Kohlwein, S.D.4
  • 32
    • 18944372568 scopus 로고    scopus 로고
    • Mot1-mediated control of transcription complex assembly and activity
    • Dasgupta A., Juedes S.A., Sprouse R.O., and Auble D.T. Mot1-mediated control of transcription complex assembly and activity. EMBO J. 24 (2005) 1717-1729
    • (2005) EMBO J. , vol.24 , pp. 1717-1729
    • Dasgupta, A.1    Juedes, S.A.2    Sprouse, R.O.3    Auble, D.T.4
  • 33
    • 1842314454 scopus 로고
    • Sequence-specific positioning of nucleosomes over the steroid-inducible MMTV promoter
    • Richard-Roy H., and Hager G.L. Sequence-specific positioning of nucleosomes over the steroid-inducible MMTV promoter. EMBO J. 6 (1987) 2321-2328
    • (1987) EMBO J. , vol.6 , pp. 2321-2328
    • Richard-Roy, H.1    Hager, G.L.2
  • 34
    • 0025930248 scopus 로고
    • Nucleosome positioning - occurrence, mechanisms, and functional consequences
    • Simpson R.T. Nucleosome positioning - occurrence, mechanisms, and functional consequences. Prog. Nucleic Acid Res. Mol. Biol. 40 (1991) 143-184
    • (1991) Prog. Nucleic Acid Res. Mol. Biol. , vol.40 , pp. 143-184
    • Simpson, R.T.1
  • 35
    • 0035860797 scopus 로고    scopus 로고
    • DNA sequence plays a major role in determining nucleosome positions in yeast CUP1 chromatin
    • Shen C.-H., and Clark D.J. DNA sequence plays a major role in determining nucleosome positions in yeast CUP1 chromatin. J. Biol. Chem. 276 (2001) 35209-35216
    • (2001) J. Biol. Chem. , vol.276 , pp. 35209-35216
    • Shen, C.-H.1    Clark, D.J.2
  • 36
    • 33750989356 scopus 로고    scopus 로고
    • Activation of Saccharomyces cerevisiae HIS3 results in Gcn4p-dependent, SWI/SNF-dependent moblization of nucleosomes over the entire gene
    • Kim Y., McLaughlin N., Lindstrom K., Tsukiyama T., and Clark D.J. Activation of Saccharomyces cerevisiae HIS3 results in Gcn4p-dependent, SWI/SNF-dependent moblization of nucleosomes over the entire gene. Mol. Cell Biol. 26 (2006) 8607-8622
    • (2006) Mol. Cell Biol. , vol.26 , pp. 8607-8622
    • Kim, Y.1    McLaughlin, N.2    Lindstrom, K.3    Tsukiyama, T.4    Clark, D.J.5
  • 37
    • 0343924289 scopus 로고    scopus 로고
    • Repression by Ume6 involves recruitment of a complex containing Sin3 corepressor and Rpd3 histone deactylase to target promoters
    • Kadosh D., and Struhl K. Repression by Ume6 involves recruitment of a complex containing Sin3 corepressor and Rpd3 histone deactylase to target promoters. Cell 89 (1997) 365-371
    • (1997) Cell , vol.89 , pp. 365-371
    • Kadosh, D.1    Struhl, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.