Molecular markers for establishing distinctness in vegetatively propagated crops: A case study in grapevine

Theoretical and Applied Genetics

Volumn 119, Issue 7, 2009, Pages 1213-1222

  Ibáñez, Javier ^a   Vélez, M Dolores ^a   Teresa de Andres M ^a   Borrego, Joaquín ^a  

^a Dept Agroalimentación   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

AVERAGE VALUES; INFORMATION CONTENTS; KEY ISSUES; MICROSATELLITE MARKERS; MINIMUM DISTANCE; MOLECULAR MARKER; MORPHOLOGICAL TRAITS; PAIR-WISE COMPARISON; PLANT BREEDERS;

CROPS; FRUITS; GENES; OPTIMIZATION;

DNA SEQUENCES;

VITIS;

MICROSATELLITE DNA; PLANT DNA; PRIMER DNA;

ALLELE; ARTICLE; BASE PAIRING; CROP; GENETIC MARKER; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENETICS; GENOTYPE; GRAPE; HETEROZYGOTE; ISOLATION AND PURIFICATION; POLYMERASE CHAIN REACTION;

ALLELES; BASE PAIRING; CROPS, AGRICULTURAL; DNA PRIMERS; DNA, PLANT; GENETIC MARKERS; GENETIC VARIATION; GENOTYPE; HETEROZYGOTE; MICROSATELLITE REPEATS; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; VITIS;

EID: 73449112685     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-009-1122-2     Document Type: Article

References (42)

1. Blouet F, Collonnier C, Guerin D, Guiard J, Lallemand J (2006) Possible use of molecular techniques in DUS testing on maize. How to integrate a new tool to serve the eVectiveness of protection oVered under the UPOV system. 10th Session of the BMT working group (UPOV), Seoul (Republic of Korea)
2. Bowers JE, Dangl GS, Vignani R, Meredith CP (1996) Isolation and characterization of new polymorphic simple sequence repeat loci in grape (Vitis vinifera L.). Genome 39:628-633
3. Bowers JE, Dangl GS, Meredith CP (1999) Development and characterization of additional microsatellite DNA markers for grape. Am J Enol Vitic 50:243-246
4. Branas J, Truel P (1965) Variétés de raisins de table. Nomenclature, description, sélection, amélioration. Le Progrés Agricole et Viticole, Montpellier
5. Cipriani G, Marrazzo MT, Di Gaspero G, PfeiVer A, Morgante M, Testolin R (2008) A set of microsatellite markers with long core repeat optimized for grape (Vitis spp.) genotyping-art. no. 127. BMC Plant Biol 8:127
6. Crespan M (2004) Evidence on the evolution of polymorphism of microsatellite markers in varieties of Vitis vinifera L. Theor Appl Genet 108:231-237
7. Crespan M, Cabello F, Giannietto S, Ibanez J, Kontic JK, Maletic E, Pejic I, Rodriguez-Torres I, Antonacci D (2006) Malvasia delle Lipari, Malvasia di Sardegna, Greco di Gerace, Malvasia de Sitges and Malvasia dubrovacka-synonyms of an old and famous grape cultivar. Vitis 45:69-73
8. De Riek J, Calsyn E, Everaert I, Van Bockstaele E, De Loose M (2001) AFLP based alternatives for the assessment of Distinctness, Uniformity and Stability of sugar beet varieties. Theor Appl Genet 103:1254-1265
9. Di Gaspero G, Peterlunger E, Testolin R, Edwards KJ, Cipriani G (2000) Conservation of microsatellite loci within the genus Vitis. Theor Appl Genet 101:301-308
10. Galet P (2000) Dictionnaire Encyclopédique des Cépages. Hachette, Paris
11. Gunjaca J, Buhinicek I, Jukic M, Sarcevic H, Vragolovic A, Kozic Z, Jambrovic A, Pejic I (2008) Discriminating maize inbred lines using molecular and DUS data. Euphytica 161:165-172
12. Hocquigny S, Pelsy F, Dumas V, Kindt S, Heloir MC, Merdinoglu D (2004) DiversiWcation within grapevine cultivars goes through chimeric states. Genome 47:579-589
13. Ibáñez J, de Andrés MT, Borrego J (2000) Allelic variation observed at one microsatellite locus between the two synonym grape cultivars Black Currant and Mavri Corinthiaki. Vitis 39:173-174
14. Ibáñez J, de Andrés MT, Molino A, Borrego J (2003) Genetic study of key Spanish grapevine varieties using microsatellite analysis. Am J Enol Vitic 54:22-30
15. Ibáñez J, Vargas AM, Palancar M, Borrego J, de Andrés MT (2009) Genetic relationships among table-grape varieties. Am J Enol Vitic 60:35-42
16. Kwon YS, Lee JM, Yi GB, Yi SI, Kim KM, Soh EH, Bae KM, Park EK, Song IH, Kim BD (2005) Use of SSR markers to complement tests of distinctiveness, uniformity and stability (DUS) of pepper (Capsicum annuum L.) varieties. Mol Cells 19:428-435
17. Le Cunff L, Fournier-Level A, Laucou V, Vezzulli S, Lacombe T, Adam-Blondon A-F, Boursiquot J-M, This P (2008) Construction of nested genetic core collections to optimize the exploitation of natural diversity in Vitis vinifera L. subsp. sativa. BMC Plant Biol 8:31
18. Martín JP, Borrego J, Cabello F, Ortiz JM (2003) Characterization of Spanish grapevine cultivar diversity using sequence-tagged microsatellite site markers. Genome 46:10-18
19. Merdinoglu D, Butterlin G, Bevilacqua L, Chiquet V, Adam-Blondon AF, Decroocq S (2005) Development and characterization of a large set of microsatellite markers in grapevine (Vitis vinifera L.) suitable for multiplex PCR. Mol Breed 15:349-366
20. Noli E, Teriaca MS, Sanguineti MC, Conti S (2008) Utilization of SSR and AFLP markers for the assessment of distinctness in durum wheat. Mol Breed 22:301-313
21. OIV (1987) Synonyms of the varieties of table grapes and raisins. Bull l'OIV 671-672:44-82
22. OIV (2007) 2nd edition of the OIV descriptor list for grape varieties and Vitis species. Organisation internationale de la vigne et du vin, Paris
23. Park SDE (2001) Trypanotolerance in West African cattle and the population genetic eVects of selection. University of Dublin, Dublin
24. Regner F, Wiedeck E, Stadlbauer A (2000) DiVerentiation and identiWcation of White Riesling clones by genetic markers. Vitis 39:103-107
25. Regner F, Hack R, Santiago JL (2006) Highly variable Vitis microsatellite loci for the identiWcation of Pinot Noir clones. Vitis 45:85-91
26. Riaz S, Dangl GS, Edwards KJ, Meredith CP (2004) A microsatellite marker based framework linkage map of Vitis vinifera L. Theor Appl Genet 108:864-872
27. Rodríguez-Torres I (2001) Caracterización de variedades de vid por métodos ampelográWcos y bioquímicos. Resolución de homonimias y sinonimias. Departamento de Biología Vegetal, Universdad Politécnica de Madrid, Madrid, p 351
28. Roldan-Ruiz I, van Euwijk FA, Gilliland TJ, Dubreuil P, Dillmann C, Lallemand J, De Loose M, Baril CP (2001) A comparative study of molecular and morphological methods of describing relationships between perennial ryegrass (Lolium perenne L.) varieties. Theor Appl Genet 103:1138-1150
29. Sefc KM, Regner F, Turetschek E, Glössl J, Steinkellner H (1999) IdentiWcation of microsatellite sequences in Vitis riparia and their applicability for genotyping of diVerent Vitis species. Genome 42:367-373
30. Sefc KM, Lefort F, Grando MS, Scott KD, Steinkellner H, Thomas MR (2001) Microsatellite markers for grapevine: a state of the art. In: Roubelakis-Angelakis KA (ed) Molecular biology & biotechnology of grapevine. Kluwer Academic Publishers, The Netherlands, p 30
31. Singh RK, Sharma RK, Singh AK, Singh VP, Singh NK, Tiwari SP, Mohapatra T (2004) Suitability of mapped sequence tagged microsatellite site markers for establishing distinctness, uniformity and stability in aromatic rice. Euphytica 135:135-143
32. This P, Jung A, Boccacci P, Borrego J, Botta R, Costantini L, Crespan M, Dangl GS, Eisenheld C, Ferreira-Monteiro F, Grando S, Ibáñez J, Lacombe T, Laucou V, Magalhaes R, Meredith CP, Milani N, Peterlunger E, Regner F, Zulini L, Maul E (2004) Development of a standard set of microsatellite reference alleles for identiWcation of grape cultivars. Theor Appl Genet 109:1448-1458
33. This P, Lacombe T, Thomas MR (2006) Historical origins and genetic diversity of wine grapes. Trends Genet 22:511-519
34. Thomas MR, Scott NS (1993) Microsatellite repeats in grapevine reveal DNA polymorphisms when analysed as sequence-tagged sites (STSs). Theor Appl Genet 86:985-990
35. Tommasini L, Batley J, Arnold GM, Cooke RJ, Donini P, Lee D, Law JR, Lowe C, Moule C, Trick M, Edwards KJ (2003) The development of multiplex simple sequence repeat (SSR) markers to complement distinctness uniformity and stability testing of rape (Brassica napus L.) varieties. Theor Appl Genet 106:1091-1101
36. UPOV (2002) General introduction to the examination of Distinctness, Uniformity and Stability and the development of harmonized descriptions of new varieties of plants. International Union for the Protection of New Varieties of Plants, Geneva, p 26
37. van Eeuwijk FA, Baril CP (2001) Conceptual and statistical issues related to the use of molecular markers for distinctness and essential derivation. Acta Hort 546:35-53
38. Vargas AM, Velez MD, de Andres MT, Laucou V, Lacombe T, Boursiquot JM, Borrego J, Ibáñez J (2007) Corinto bianco: a seedless mutant of Pedro Ximenes. Am J Enol Vitic 58:540-543
39. Velasco R, Zharkikh A, Troggio M, Cartwright DA, Cestaro A, Pruss D, Pindo M, Fitzgerald LM, Vezzulli S, Reid J, Malacarne G, Iliev D, Coppola G, Wardell B, Micheletti D, Macalma T, Facci M, Mitchell JT, Perazzolli M, Eldredge G, Gatto P, Oyzerski R, Moretto M, Gutin N, Stefanini M, Chen Y, Segala C, Davenport C, Dematte L, Mraz A, Battilana J, Stormo K, Costa F, Tao Q, Si-Ammour A, Harkins T, Lackey A, Perbost C, Taillon B, Stella A, Solovyev V, Fawcett JA, Sterck L, Vandepoele K, Grando SM, Toppo S, Moser C, Lanchbury J, Bogden R, Skolnick M, Sgaramella V, Bhatnagar SK, Fontana P, Gutin A, Van de Peer Y, Salamini F, Viola R (2007) A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS ONE 2:e1326
40. Vosman B, Visser D, van der Voort JR, Smulders MJM, van Eeuwijk F (2004) The establishment of 'essential derivation' among rose varieties, using AFLP. Theor Appl Genet 109:1718-1725
41. Wagner HW, Sefc KM (1999) Identity 1.0, Centre for Applied Genetics, University of Agricultural Sciences, Vienna
42. Welter L, Göktürk-Baydar N, Akkurt M, Maul E, Eibach R, Töpfer R, Zyprian E (2007) Genetic mapping and localization of quantitative trait loci aVecting fungal disease resistance and leaf morphology in grapevine (Vitis vinifera L). Mol Breed 20:359-374