Utilization of SSR and AFLP markers for the assessment of distinctness in durum wheat

Molecular Breeding

Volumn 22, Issue 2, 2008, Pages 301-313

  Noli, E ^a   Teriaca, M S ^a   Sanguineti, M C ^a   Conti, S ^a  

^a UNIVERSITY OF BOLOGNA   (Italy)

Author keywords

AFLPs; Durum wheat; DUS; Genetic similarity; Morphological descriptors; SSRs

Indexed keywords

BIOMARKERS; DNA SEQUENCES;

AFLP; AMPLIFIED FRAGMENT LENGTH POLYMORPHISM MARKERS; DURUM WHEATS; DUS; GENETIC SIMILARITIES; MOLECULAR MARKER; MOLECULAR TECHNIQUES; MORPHOLOGICAL DESCRIPTORS; SIMPLE SEQUENCE REPEATS; SSR;

CHROMOSOMES;

TRITICUM AESTIVUM; TRITICUM TURGIDUM SUBSP. DURUM;

EID: 48349129768     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-008-9176-4     Document Type: Article

References (39)

1. E Autrique MM Nachit P Monneveux SD Tanksley ME Sorrells 1996 Genetic diversity in durum wheat based on RFLPs, morphophysiological traits and coefficient of parentage. Crop Sci 36 735 742
2. Y Beyene AM Botha AA Myburg 2005 A comparative study of molecular and morphological methods of describing relationships in traditional Ethiopian highland maize African J Biotech 4 586 595
3. MS Camlin 2001 Possible future roles for molecular techniques in the identification and registration of new plant cultivars Acta Hortic 546 289 296
4. RJ Cooke JC Reeves 2003 Plant genetic resources and molecular markers: variety registration in a new era Plant Genet Res 1 81 87
5. CPVO (2003) European Union - Community plant variety office. Protocol for distinctness, uniformity and stability tests: durum wheat (Triticum durum Desf.) http://www.cpvo.eu.int/documents/TP/agricoles/TPdurumwheat120.pdf
6. Fehr WR (1984) Genetic contributions to yield grains of five major crop plants. Spec. Publ. 7. CSSA, Madison, WI
7. H Fufa PS Baenziger BS Beecher I Dweikat RA Graybosh KM Eskridge 2005 Comparison of phenotypic and molecular marker-based classifications of hard red winter wheat cultivars Euphytica 145 133 146
8. A Graner WF Ludwig AE Melchinger 1994 Relationships among European barley germplasm: II. Comparison of RFLP and pedigree data Crop Sci 34 1199 1205
9. P Gupta H Balyan K Edwards P Isaac V Korzun M Röder MF Gautier P Joudrier A Schlatter J Dubcovsky R De la Pena M Khairallah G Penner M Hayden P Sharp B Keller R Wang J Hardouin P Jack P Leroy 2002 Genetic mapping of 66 new microsatellite (SSR) loci in bread wheat Theor Appl Genet 105 413 422
10. H Guyomarc'h P Sourdille G Charmet KJ Edwards M Bernard 2002 Characterisation of polymorphic markers from T. tauschii and transferability to the D-genome of bread wheat Theor Appl Genet 104 1164 1172
11. ISF (2003) ISF view on intellectual property http://www.worldseed.org/ pdf/ISF_View_on_Intellectual_Property.pdf
12. ISF (2006) Use of DNA markers for DUS testing, essential derivation and identification http://www.worldseed.org/Position_papers/Use_DNA_Markers.htm
13. JR Law P Donini RMD Koebner JC Reeves RJ Cooke 1998 DNA profiling and plant variety registration. III: the statistical assessment of distinctness in wheat using amplified fragment length polymorphisms Euphytica 102 335 342
14. V Lefebvre B Goffinet JC Chauvet B Caromel P Signoret R Brand A Palloix 2001 Evaluation of genetic distances between pepper inbred lines for cultivar protection purposes: comparison of AFLP, RAPD and phenotypic data Theor Appl Genet 102 741 750
15. C Lotti S Salvi A Pasqualone R Tuberosa A Blanco 2000 Integration of AFLP markers into an RFLP-based map of durum wheat Plant Breed 119 393 401
16. M Maccaferri S Stefanelli F Rotondo R Tuberosa MC Sanguineti 2007 Relationships among durum wheat accessions. I. Comparative analysis of SSR, AFLP, and phenotypic data Genome 50 373 384
17. S Marić S Bolarić J Martinčić I Pejić V Kozumplik 2004 Genetic diversity of hexaploid wheat cultivars estimated by RAPD markers, morphological traits and coefficients of parentage Plant Breed 123 366 369
18. G Moore S Abbo W Cheung T Foote MD Gale RMD Koebner A Leitch I Leitch T Money P Stancombe MM Yano RB Flavell 1993 Key features of cereal genome organization as revealed by the use of cytosine methylation-sensitive restriction endonucleases Genomics 15 472 482
19. E Noli S Salvi R Tuberosa 1997 Comparative analysis of genetic relationships in barley based on RFLP and RAPD markers Genome 40 607 616
20. G Nuel C Baril S Robin 2001 Varietal distinctness assisted by molecular markers: a methodological approach Acta Hortic 546 65 71
21. W Powell M Morgante C Andre M Hanafey J Vogel S Tingey A Rafalsky 1996 The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis Mol Breed 2 225 238
22. W Powell WTB Thomas E Baird P Lawrence A Booth B Harrower JW Mc Nicol R Waugh 1997 Analysis of quantitative traits in barley by the use of amplified fragment length polymorphism Heredity 78 48 59
23. LR Preston N Harker T Holton MK Morell 1999 Plant cultivar identification using DNA analysis Plant Var Seeds 12 191 205
24. MS Röder V Korzun K Wendehake J Plaschke MH Tixier P Leroy MW Ganal 1998 A microsatellite map of wheat Genetics 149 2007 2023
25. Rohlf FJ (1997) NTSYS-pc version 2.0. Exter, Setauket, NY
26. JK Roy MS Lakshmikumaran HS Balyan PK Gupta 2004 AFLP-based genetic diversity and its comparison with diversity based on SSR, SAMPL, and phenotypic traits in bread wheat Biochem Genet 42 43 59
27. C Royo F Álvaro V Martos A Ramdani J Isidro D Villegas LF del García Moral 2007 Genetic changes in durum wheat yield components and associated traits in Italian and Spanish varieties during the 20th century Euphytica 155 259 270
28. MA Saghai-Maroof KM Soliman RA Jorgensen RW Allard 1984 Ribosomal DNA spacer length polymorphism in barley: Mendelian inheritance, chromosomal location and population dynamics Proc Natl Acad Sci USA 83 1757 1761
29. JW Shut X Qi P Stam 1997 Association between relationship measures based on AFLP markers, pedigree data and morphological traits in barley Theor Appl Genet 95 1161 1168
30. JSC Smith OS Smith 1992 Fingerprinting crop varieties Adv Agron 47 5 140
31. Sneath PHA, Sokal RR (1973) Numerical taxonomy. WH Freeman, San Francisco, CA, USA
32. M Soller JS Beckman 1983 Genetic polymorphism in verietal identification and genetic improvement Theor Appl Genet 67 25 33
33. DJ Somers P Isaac K Edwards 2004 A high-density microsatellite consensus map for bread wheat (Triticum aestivum L.) Theor Appl Genet 109 1105 1114
34. QJ Song JR Shi S Singh EW Fickus JM Costa J Lewis BS Gill R Ward PB Cregan 2005 Development and mapping of microsatellite (SSR) markers in wheat Theor Appl Genet 110 550 560
35. Sourdille P, Guyomarc'h H, Baron C, Gandon B, Chiquet V, Artiguenave F, Edwards K, Foisset N, Dufour P, Bernard M (2001) Improvement of the genetic maps of wheat using new microsatellite markers. Proceedings of the 9th plant and animal genome. Final Abstract Guide. San Diego January 13-17 2001 P425 p167
36. UPOV (1961) International convention for the protection of new varieties of plants. http://www.upov.int/en/publications/conventions/index.html
37. UPOV (2004) Administrative and legal committee - molecular techniques. UPOV CAJ/50/4
38. FA van Eeuwijk CP Baril 2001 Conceptual and statistical issues related to the use of molecular markers for distinctness and essential derivation Acta Hortic 546 35 53
39. J-K Yu M La Rota RV Kantety ME Sorrells 2004 EST derived SSR markers for comparative mapping in wheat and rice Mol Genet Genom 271 742 751