-
1
-
-
0000359208
-
-
0027-8424. 10.1073/pnas.71.10.4135
-
J. Hopfield, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 71, 4135 (1974). 10.1073/pnas.71.10.4135
-
(1974)
Proc. Natl. Acad. Sci. U.S.A.
, vol.71
, pp. 4135
-
-
Hopfield, J.1
-
2
-
-
0033613387
-
A kinetic proofreading mechanism for disentanglement of DNA by topoisomerases
-
DOI 10.1038/44872
-
J. Yan, M. Magnasco, and J. Marko, Nature (London) 0028-0836 401, 932 (1999). 10.1038/44872 (Pubitemid 29518965)
-
(1999)
Nature
, vol.401
, Issue.6756
, pp. 932-935
-
-
Yan, J.1
Magnasco, M.O.2
Marko, J.F.3
-
3
-
-
3943107573
-
Molecular mechanisms of mammalian DNA repair and the DNA damage checkpoints
-
DOI 10.1146/annurev.biochem.73.011303.073723
-
A. Sancar, K. Unsal-Kacmaz, and S. Linn, Annu. Rev. Biochem. 0066-4154 73, 39 (2004). 10.1146/annurev.biochem.73.011303.073723 (Pubitemid 39050363)
-
(2004)
Annual Review of Biochemistry
, vol.73
, pp. 39-85
-
-
Sancar, A.1
Lindsey-Boltz, L.A.2
Unsal-Kacmaz, K.3
Linn, S.4
-
5
-
-
4744365694
-
TRNA selection and kinetic proofreading in translation
-
DOI 10.1038/nsmb831
-
S. C. Blanchard, R. L. Gonzalez Jr., H. D. Kim, S. Chu, and J. D. Puglisi, Nat. Struct. Mol. Biol. 1545-9993 11, 1008 (2004). 10.1038/nsmb831 (Pubitemid 39315306)
-
(2004)
Nature Structural and Molecular Biology
, vol.11
, Issue.10
, pp. 1008-1014
-
-
Blanchard, S.C.1
Gonzalez Jr., R.L.2
Kim, H.D.3
Chu, S.4
Puglisi, J.D.5
-
6
-
-
60549102848
-
-
0028-0836. 10.1038/nature07600
-
T. Jovanovic-Talisman, J. Tetenbaum-Novatt, A. S. McKenney, A. Zilman, R. Peters, M. P. Rout, and B. T. Chait, Nature (London) 0028-0836 457, 1023 (2009). 10.1038/nature07600
-
(2009)
Nature (London)
, vol.457
, pp. 1023
-
-
Jovanovic-Talisman, T.1
Tetenbaum-Novatt, J.2
McKenney, A.S.3
Zilman, A.4
Peters, R.5
Rout, M.P.6
Chait, B.T.7
-
8
-
-
0029926145
-
Kinetic discrimination in T-cell activation
-
DOI 10.1073/pnas.93.4.1401
-
J. D. Rabinowitz, C. Beeson, D. S. Lyons, M. M. Davis, and H. M. McConnell, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 93, 1401 (1996). 10.1073/pnas.93.4.1401 (Pubitemid 26075134)
-
(1996)
Proceedings of the National Academy of Sciences of the United States of America
, vol.93
, Issue.4
, pp. 1401-1405
-
-
Rabinowitz, J.D.1
Beeson, C.2
Lyons, D.S.3
Davis, M.M.4
Mcconnell, H.M.5
-
9
-
-
0034903068
-
The Impact of duration versus extent of TCR occupancy on T cell activation: A revision of the kinetic proofreading model
-
DOI 10.1016/S1074-7613(01)00173-X
-
C. Rosette, G. Werlen, M. Daniels, P. Holman, S. Alam, P. Travers, N. Gascoigne, E. Palmer, and S. Jameson, Immunity 1074-7613 15, 59 (2001). 10.1016/S1074-7613(01)00173-X (Pubitemid 32728320)
-
(2001)
Immunity
, vol.15
, Issue.1
, pp. 59-70
-
-
Rosette, C.1
Werlen, G.2
Daniels, M.A.3
Holman, P.O.4
Alam S.Munir5
Travers, P.J.6
Gascoigne, N.R.J.7
Palmer, E.8
Jameson, S.C.9
-
10
-
-
0035912716
-
Unexpected signals in a system subject to kinetic proofreading
-
DOI 10.1073/pnas.121171998
-
Z. -J. Liu, H. Haleem-Smith, H. Chen, and H. Metzger, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 98, 7289 (2001). 10.1073/pnas.121171998 (Pubitemid 32567941)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.13
, pp. 7289-7294
-
-
Liu, Z.-J.1
Haleem-Smith, H.2
Chen, H.3
Metzger, H.4
-
12
-
-
0037378771
-
-
0022-1767
-
J. R. Faeder, W. S. Hlavacek, I. Reischl, M. L. Blinov, H. Metzger, A. Redondo, C. Wofsy, and B. Goldstein, J. Immunol. 0022-1767 170, 3769 (2003).
-
(2003)
J. Immunol.
, vol.170
, pp. 3769
-
-
Faeder, J.R.1
Hlavacek, W.S.2
Reischl, I.3
Blinov, M.L.4
Metzger, H.5
Redondo, A.6
Wofsy, C.7
Goldstein, B.8
-
13
-
-
0016748476
-
-
0022-2836. 10.1016/S0022-2836(75)80060-X
-
C. F. Springgate and L. A. Loeb, J. Mol. Biol. 0022-2836 97, 577 (1975). 10.1016/S0022-2836(75)80060-X
-
(1975)
J. Mol. Biol.
, vol.97
, pp. 577
-
-
Springgate, C.F.1
Loeb, L.A.2
-
14
-
-
0016793283
-
-
0300-9084. 10.1016/S0300-9084(75)80139-8
-
J. Ninio, Biochimie 0300-9084 57, 587 (1975). 10.1016/S0300-9084(75) 80139-8
-
(1975)
Biochimie
, vol.57
, pp. 587
-
-
Ninio, J.1
-
15
-
-
0018968958
-
Proofreading systems of multiple stages for improved accuracy of biological discrimination
-
DOI 10.1016/0022-5193(80)90284-2
-
R. R. Freter and M. Savageau, J. Theor. Biol. 0022-5193 85, 99 (1980). 10.1016/0022-5193(80)90284-2 (Pubitemid 10014852)
-
(1980)
Journal of Theoretical Biology
, vol.85
, Issue.1
, pp. 99-123
-
-
Freter, R.R.1
Savageau, M.A.2
-
16
-
-
0019874915
-
-
0022-5193. 10.1016/0022-5193(81)90063-1
-
M. Savageau, J. Theor. Biol. 0022-5193 93, 179 (1981). 10.1016/0022-5193(81)90063-1
-
(1981)
J. Theor. Biol.
, vol.93
, pp. 179
-
-
Savageau, M.1
-
17
-
-
70349284544
-
-
0031-9007. 10.1103/PhysRevLett.103.128103
-
A. Zilman, J. Pearson, and G. Bel, Phys. Rev. Lett. 0031-9007 103, 128103 (2009). 10.1103/PhysRevLett.103.128103
-
(2009)
Phys. Rev. Lett.
, vol.103
, pp. 128103
-
-
Zilman, A.1
Pearson, J.2
Bel, G.3
-
18
-
-
28844497063
-
-
0031-9007. 10.1103/PhysRevLett.95.170603
-
M. D'Orsogna and T. Chou, Phys. Rev. Lett. 0031-9007 95, 170603 (2005). 10.1103/PhysRevLett.95.170603
-
(2005)
Phys. Rev. Lett.
, vol.95
, pp. 170603
-
-
D'Orsogna, M.1
Chou, T.2
-
20
-
-
27744586782
-
-
0031-9007. 10.1103/PhysRevLett.94.240602
-
G. Bel and E. Barkai, Phys. Rev. Lett. 0031-9007 94, 240602 (2005). 10.1103/PhysRevLett.94.240602
-
(2005)
Phys. Rev. Lett.
, vol.94
, pp. 240602
-
-
Bel, G.1
Barkai, E.2
-
23
-
-
34848892126
-
First passage times of Lévy flights coexisting with subdiffusion
-
DOI 10.1103/PhysRevE.76.031129
-
T. Koren, J. Klafter, and M. Magdziarz, Phys. Rev. E 1063-651X 76, 031129 (2007). 10.1103/PhysRevE.76.031129 (Pubitemid 47507693)
-
(2007)
Physical Review E - Statistical, Nonlinear, and Soft Matter Physics
, vol.76
, Issue.3
, pp. 031129
-
-
Koren, T.1
Klafter, J.2
Magdziarz, M.3
-
25
-
-
33751347484
-
The finite state projection algorithm for the solution of the chemical master equation
-
DOI 10.1063/1.2145882, 044104
-
B. Munsky and M. Khammash, J. Chem. Phys. 0021-9606 124, 044104 (2006). 10.1063/1.2145882 (Pubitemid 43166302)
-
(2006)
Journal of Chemical Physics
, vol.124
, Issue.4
, pp. 1-13
-
-
Munsky, B.1
Khammash, M.2
-
26
-
-
35348848671
-
-
unpublished
-
K. Burrage, M. Hegland, S. Macnamara, and R. Sidje, Proceedings of the A. A. Markov 150th Anniversary Meeting, 2006 (unpublished), p. 21.
-
(2006)
Proceedings of the A. A. Markov 150th Anniversary Meeting
, pp. 21
-
-
Burrage, K.1
Hegland, M.2
MacNamara, S.3
Sidje, R.4
-
27
-
-
34548417080
-
-
0021-9991. 10.1016/j.jc2007.05.016
-
B. Munsky and M. Khammash, J. Comput. Phys. 0021-9991 226, 818 (2007). 10.1016/j.jcp.2007.05.016
-
(2007)
J. Comput. Phys.
, vol.226
, pp. 818
-
-
Munsky, B.1
Khammash, M.2
-
28
-
-
33751566347
-
Reduction and solution of the chemical master equation using time scale separation and finite state projection
-
DOI 10.1063/1.2397685
-
S. Peleš, B. Munsky, and M. Khammash, J. Chem. Phys. 0021-9606 125, 204104 (2006). 10.1063/1.2397685 (Pubitemid 44847661)
-
(2006)
Journal of Chemical Physics
, vol.125
, Issue.20
, pp. 204104
-
-
Peles, S.1
Munsky, B.2
Khammash, M.3
-
29
-
-
40049086435
-
The finite state projection approach for the analysis of stochastic noise in gene networks
-
DOI 10.1109/TAC.2007.911361
-
B. Munsky and M. Khammash, IEEE Trans. Autom. Control 52, 201 (2008). 10.1109/TAC.2007.911361 (Pubitemid 351320411)
-
(2008)
IEEE Transactions on Automatic Control
, vol.53
, Issue.1
, pp. 201-214
-
-
Munsky, B.1
Khammash, M.2
-
30
-
-
33749237987
-
A variational approach to the stochastic aspects of cellular signal transduction
-
DOI 10.1063/1.2353835
-
Y. Lan, P. G. Wolynes, and G. A. Papoian, J. Chem. Phys. 0021-9606 125, 124106 (2006). 10.1063/1.2353835 (Pubitemid 44484189)
-
(2006)
Journal of Chemical Physics
, vol.125
, Issue.12
, pp. 124106
-
-
Lan, Y.1
Wolynes, P.G.2
Papoian, G.A.3
-
32
-
-
0017030517
-
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
-
DOI 10.1016/0021-9991(76)90041-3
-
D. T. Gillespie, J. Comput. Phys. 22, 403 (1976). 10.1016/0021-9991(76) 90041-3 (Pubitemid 8008311)
-
(1976)
Journal of Computational Physics
, vol.22
, Issue.4
, pp. 403-434
-
-
Gillepsie, D.T.1
-
33
-
-
0035933994
-
-
0021-9606. 10.1063/1.1378322
-
D. T. Gillespie, J. Chem. Phys. 0021-9606 115, 1716 (2001). 10.1063/1.1378322
-
(2001)
J. Chem. Phys.
, vol.115
, pp. 1716
-
-
Gillespie, D.T.1
-
34
-
-
22944480262
-
The slow-scale stochastic simulation algorithm
-
DOI 10.1063/1.1824902, 014116
-
Y. Cao, D. Gillespie, and L. Petzold, J. Chem. Phys. 0021-9606 122, 014116 (2005). 10.1063/1.1824902 (Pubitemid 41047759)
-
(2005)
Journal of Chemical Physics
, vol.122
, Issue.1
, pp. 1-18
-
-
Cao, Y.1
Gillespie, D.T.2
Petzold, L.R.3
-
35
-
-
54049151604
-
-
10.1049/iet-syb:20070082 1751-8849
-
B. Munsky and M. Khammash, IET Syst. Biol. 2, 323 (2008). 10.1049/iet-syb:20070082 1751-8849
-
(2008)
IET Syst. Biol.
, vol.2
, pp. 323
-
-
Munsky, B.1
Khammash, M.2
-
36
-
-
0000729781
-
-
0021-9606. 10.1063/1.475562
-
C. Dellago, P. Bolhuis, F. Csajka, and D. Chandler, J. Chem. Phys. 0021-9606 108, 1964 (1998). 10.1063/1.475562
-
(1998)
J. Chem. Phys.
, vol.108
, pp. 1964
-
-
Dellago, C.1
Bolhuis, P.2
Csajka, F.3
Chandler, D.4
-
37
-
-
3042545299
-
-
0021-9606. 10.1063/1.1738640
-
A. Faradjian and R. Elber, J. Chem. Phys. 0021-9606 120, 10880 (2004). 10.1063/1.1738640
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 10880
-
-
Faradjian, A.1
Elber, R.2
-
39
-
-
16844362197
-
-
0021-9991. 10.1016/j.jc2004.11.003
-
T. van Erp and P. Bolhuis, J. Comput. Phys. 0021-9991 205, 157 (2005). 10.1016/j.jcp.2004.11.003
-
(2005)
J. Comput. Phys.
, vol.205
, pp. 157
-
-
Van Erp, T.1
Bolhuis, P.2
-
40
-
-
30744470375
-
Simulating rare events in equilibrium or nonequilibrium stochastic systems
-
DOI 10.1063/1.2140273, 024102
-
R. Allen, D. Frenkel, and P. Rein ten Wolde, J. Chem. Phys. 0021-9606 124, 024102 (2006). 10.1063/1.2140273 (Pubitemid 43100174)
-
(2006)
Journal of Chemical Physics
, vol.124
, Issue.2
, pp. 1-16
-
-
Allen, R.J.1
Frenkel, D.2
Ten Wolde, P.R.3
-
41
-
-
33750957815
-
Statistics of cellular signal transduction as a race to the nucleus by multiple random walkers in compartment/phosphorylation space
-
DOI 10.1073/pnas.0607698103
-
T. Lu, T. Shen, C. Zong, J. Hasty, and P. G. Wolynes, Proc. Natl. Acad. Sci. U.S.A. 0027-8424 103, 16752 (2006). 10.1073/pnas.0607698103 (Pubitemid 44737325)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.45
, pp. 16752-16757
-
-
Lu, T.1
Shen, T.2
Zong, C.3
Hasty, J.4
Wolynes, P.G.5
-
42
-
-
75449108347
-
Simplicity of completion time distributions for common complex biochemical processes
-
in press
-
G. Bel, B. Munsky, and I. Nemenman, Simplicity of completion time distributions for common complex biochemical processes.,'' Phys. Biol. (in press).
-
Phys. Biol.
-
-
Bel, G.1
Munsky, B.2
Nemenman, I.3
|