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Volumn 37, Issue 8, 2010, Pages 1395-1405

Genetic programming for anticancer therapeutic response prediction using the NCI-60 dataset

Author keywords

Anticancer therapy; Genetic programming; Machine learning; Microarray data; NCI 60; Regression

Indexed keywords

ANTI-CANCER THERAPIES; ANTICANCER THERAPY; CYTARABINE; DATA SETS; DRUG DEVELOPMENT; DRUG RESISTANCE; FLUDARABINE; FLUOROURACIL; LEAST SQUARE REGRESSION; MACHINE LEARNING METHODS; MACHINE-LEARNING; MICROARRAY DATA; MICROARRAY DATASET; RESPONSE PREDICTION;

EID: 73449093194     PISSN: 03050548     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cor.2009.02.015     Document Type: Article
Times cited : (17)

References (48)
  • 2
    • 0034677518 scopus 로고    scopus 로고
    • One-stop shop for microarray data
    • Brazma A., Robinson A., Cameron G., and Ashburner M. One-stop shop for microarray data. Nature 403 6771 (2000) 699-700
    • (2000) Nature , vol.403 , Issue.6771 , pp. 699-700
    • Brazma, A.1    Robinson, A.2    Cameron, G.3    Ashburner, M.4
  • 5
    • 38149019213 scopus 로고    scopus 로고
    • Evolutionary biclustering with correlation for gene interaction networks
    • Pattern recognition and machine intelligence, Berlin: Springer;
    • Das R, Mitra S, Banka H, Mukhopadhyay S. Evolutionary biclustering with correlation for gene interaction networks. In: Pattern recognition and machine intelligence. Lecture notes in computer science, vol. 4815. Berlin: Springer; 2007. p. 416-24.
    • (2007) Lecture notes in computer science , vol.4815 , pp. 416-424
    • Das, R.1    Mitra, S.2    Banka, H.3    Mukhopadhyay, S.4
  • 6
    • 73449129893 scopus 로고    scopus 로고
    • Modeling pharmacogenomics of the NCI-60 anticancer data set: Utilizing kernel PLS to correlate the microarray data to therapeutic responses
    • US: Springer;
    • Dasgupta N, Lin SM, Carin L. Modeling pharmacogenomics of the NCI-60 anticancer data set: utilizing kernel PLS to correlate the microarray data to therapeutic responses. In: Methods of microarray data analysis II. US: Springer; 2002. p. 151-67.
    • (2002) Methods of microarray data analysis II , pp. 151-167
    • Dasgupta, N.1    Lin, S.M.2    Carin, L.3
  • 7
    • 33947540860 scopus 로고    scopus 로고
    • Gene expression signature in advanced colorectal cancer patients select drugs and response for the use of Leucovorin, Fluorouracil, and Irinotecan
    • Del Rio M., et al. Gene expression signature in advanced colorectal cancer patients select drugs and response for the use of Leucovorin, Fluorouracil, and Irinotecan. Journal of Clinical Oncology 25 7 (2007) 773-780
    • (2007) Journal of Clinical Oncology , vol.25 , Issue.7 , pp. 773-780
    • Del Rio, M.1
  • 8
    • 0034050902 scopus 로고    scopus 로고
    • Systematic variation in gene expression patterns in human cancer cell lines
    • Ross D.T., et al. Systematic variation in gene expression patterns in human cancer cell lines. Nature Genetics 24 3 (2000) 227-235
    • (2000) Nature Genetics , vol.24 , Issue.3 , pp. 227-235
    • Ross, D.T.1
  • 9
    • 0037081081 scopus 로고    scopus 로고
    • Genome-wide cDNA microarray screening to correlate gene expression profiles with sensitivity of 85 human cancer xenografts to anticancer drugs
    • Zembutsu H., et al. Genome-wide cDNA microarray screening to correlate gene expression profiles with sensitivity of 85 human cancer xenografts to anticancer drugs. Cancer Research 62 (2002) 518-527
    • (2002) Cancer Research , vol.62 , pp. 518-527
    • Zembutsu, H.1
  • 10
    • 34547792015 scopus 로고    scopus 로고
    • Comparative study of gene expression by cDNA microarray in human colorectal cancer tissues and normal mucosa
    • Bianchini M., et al. Comparative study of gene expression by cDNA microarray in human colorectal cancer tissues and normal mucosa. International Journal of Oncology 29 1 (2006) 83-94
    • (2006) International Journal of Oncology , vol.29 , Issue.1 , pp. 83-94
    • Bianchini, M.1
  • 11
    • 0034088857 scopus 로고    scopus 로고
    • A gene expression database for the molecular pharmacology of cancer
    • Sherf U., et al. A gene expression database for the molecular pharmacology of cancer. Nature Genetics 24 3 (2000) 236-244
    • (2000) Nature Genetics , vol.24 , Issue.3 , pp. 236-244
    • Sherf, U.1
  • 12
    • 33748060533 scopus 로고    scopus 로고
    • Predicting cancer drug response by proteomic profiling
    • Ma Y., et al. Predicting cancer drug response by proteomic profiling. Clinical Cancer Research 12 (2006) 4583-4589
    • (2006) Clinical Cancer Research , vol.12 , pp. 4583-4589
    • Ma, Y.1
  • 16
    • 0033569406 scopus 로고    scopus 로고
    • Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
    • Golub T., Slonim D., Tamayo P., Huard C., Gaasenbeek M., Mesirov J., et al. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286 5439 (1999) 531-537
    • (1999) Science , vol.286 , Issue.5439 , pp. 531-537
    • Golub, T.1    Slonim, D.2    Tamayo, P.3    Huard, C.4    Gaasenbeek, M.5    Mesirov, J.6
  • 17
    • 0000501656 scopus 로고
    • Information theory and an extension of maximum likelihood principle
    • Akademia Kiado, Budapest
    • Akaike H. Information theory and an extension of maximum likelihood principle. 2nd international symposium on information theory (1973), Akademia Kiado, Budapest
    • (1973) 2nd international symposium on information theory
    • Akaike, H.1
  • 20
    • 25444528447 scopus 로고    scopus 로고
    • Feature selection and classification for microarray data analysis: evolutionary methods for identifying predictive genes
    • Jirapech-Umpai T., and Aitken S. Feature selection and classification for microarray data analysis: evolutionary methods for identifying predictive genes. BMC Bioinformatics 6 1 (2005) 148
    • (2005) BMC Bioinformatics , vol.6 , Issue.1 , pp. 148
    • Jirapech-Umpai, T.1    Aitken, S.2
  • 21
    • 35248880083 scopus 로고    scopus 로고
    • Improving symbolic regression with interval arithmetic and linear scaling
    • Ryan C, et al, editor, Genetic programming, Proceedings of the 6th European conference, EuroGP, Essex, UK, April 14-16, Berlin: Springer;, 2003
    • Keijzer M. Improving symbolic regression with interval arithmetic and linear scaling. In: Ryan C, et al, editor, Genetic programming, Proceedings of the 6th European conference, EuroGP 2003, Essex, UK, April 14-16, 2003. Lecture notes in computer science, vol. 2610. Berlin: Springer; 2003. p. 71-83.
    • (2003) Lecture notes in computer science , vol.2610 , pp. 71-83
    • Keijzer, M.1
  • 25
    • 24644434032 scopus 로고    scopus 로고
    • Repeated patterns in tree genetic programming
    • Keijzer M, et al, editors, Genetic programming, 8th European conference, EuroGP2005, Berlin, Heidelberg, New York: Springer;
    • Langdon WB, Banzhaf W. Repeated patterns in tree genetic programming. In: Keijzer M, et al, editors, Genetic programming, 8th European conference, EuroGP2005. Lecture notes in computer science, vol. 3447. Berlin, Heidelberg, New York: Springer; 2005. p. 190-202.
    • (2005) Lecture notes in computer science , vol.3447 , pp. 190-202
    • Langdon, W.B.1    Banzhaf, W.2
  • 28
    • 33750623605 scopus 로고    scopus 로고
    • An empirical study of univariate and genetic algorithm-based feature selection in binary classification with microarray data
    • Lecocke M.L., and Hess K. An empirical study of univariate and genetic algorithm-based feature selection in binary classification with microarray data. Cancer Informatics 2 (2006) 313-327
    • (2006) Cancer Informatics , vol.2 , pp. 313-327
    • Lecocke, M.L.1    Hess, K.2
  • 29
    • 0034659898 scopus 로고    scopus 로고
    • Genomics, gene expression and DNA arrays
    • Lockhart D.J., and Winzeler E.A. Genomics, gene expression and DNA arrays. Nature 405 6788 (2000) 827-836
    • (2000) Nature , vol.405 , Issue.6788 , pp. 827-836
    • Lockhart, D.J.1    Winzeler, E.A.2
  • 30
    • 0004060921 scopus 로고    scopus 로고
    • Correlation-based feature selection for machine learning
    • PhD thesis. Hamilton, NZ: Waikato University, Department of Computer Science;
    • Hall MA. Correlation-based feature selection for machine learning. PhD thesis. Hamilton, NZ: Waikato University, Department of Computer Science; 1998.
    • (1998)
    • Hall, M.A.1
  • 32
    • 38049086193 scopus 로고    scopus 로고
    • Genome-wide genetic analysis using genetic programming: the critical need for expert knowledge
    • Riolo R.L., Soule T., and Worzel B. (Eds), Springer, Ann Arbor
    • Moore J.H., and White B.C. Genome-wide genetic analysis using genetic programming: the critical need for expert knowledge. In: Riolo R.L., Soule T., and Worzel B. (Eds). Genetic programming theory and practice IV. Genetic and evolutionary computation vol. 5 (11-13 May 2007), Springer, Ann Arbor 11-28
    • (2007) Genetic programming theory and practice IV. Genetic and evolutionary computation , vol.5 , pp. 11-28
    • Moore, J.H.1    White, B.C.2
  • 33
    • 0035452020 scopus 로고    scopus 로고
    • Shortcuts in genome-scale cancer pharmacology research from multivariate analysis of the National Cancer Institute gene expression database
    • Musumarra G., Condorelli D.F., Scire S., and Costa A.S. Shortcuts in genome-scale cancer pharmacology research from multivariate analysis of the National Cancer Institute gene expression database. Biochemical pharmacology 62 (2001) 547-553
    • (2001) Biochemical pharmacology , vol.62 , pp. 547-553
    • Musumarra, G.1    Condorelli, D.F.2    Scire, S.3    Costa, A.S.4
  • 34
    • 73449111110 scopus 로고    scopus 로고
    • NCBI. The National Center for Biotechnology Information Database, 2008. See 〈http://www.ncbi.nlm.nih.gov/〉.
    • NCBI. The National Center for Biotechnology Information Database, 2008. See 〈http://www.ncbi.nlm.nih.gov/〉.
  • 36
    • 0041828876 scopus 로고    scopus 로고
    • General schema theory for genetic programming with subtree swapping crossover: Part I
    • Poli R., and McPhee N.F. General schema theory for genetic programming with subtree swapping crossover: Part I. Evolutionary Computation 11 1 (2003) 53-66
    • (2003) Evolutionary Computation , vol.11 , Issue.1 , pp. 53-66
    • Poli, R.1    McPhee, N.F.2
  • 37
    • 0042378952 scopus 로고    scopus 로고
    • General schema theory for genetic programming with subtree swapping crossover: Part II
    • Poli R., and McPhee N.F. General schema theory for genetic programming with subtree swapping crossover: Part II. Evolutionary Computation 11 2 (2003) 169-206
    • (2003) Evolutionary Computation , vol.11 , Issue.2 , pp. 169-206
    • Poli, R.1    McPhee, N.F.2
  • 38
    • 73449111431 scopus 로고    scopus 로고
    • NCI60 Cancer Microarray Project. National Cancer Institute, Bethesda, MD, 2008. See 〈http://genome-www.stanford.edu/nci60/〉.
    • NCI60 Cancer Microarray Project. National Cancer Institute, Bethesda, MD, 2008. See 〈http://genome-www.stanford.edu/nci60/〉.
  • 40
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena M., Shalon D., Davis R.W., and Brown P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270 (1995) 467-470
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 41
    • 0029126926 scopus 로고
    • Genomic structure and expression of the human gene encoding cytochrome b561, an integral protein of the chromaffin granule membrane
    • Srivastava M. Genomic structure and expression of the human gene encoding cytochrome b561, an integral protein of the chromaffin granule membrane. Journal of Biological Chemistry 270 39 (1995) 714-720
    • (1995) Journal of Biological Chemistry , vol.270 , Issue.39 , pp. 714-720
    • Srivastava, M.1
  • 42
    • 0042388208 scopus 로고    scopus 로고
    • Rankgene: identification of diagnostic genes based on expression data
    • Su Y., Murali T.M., Pavlovic V., Schaffer M., and Kasif S. Rankgene: identification of diagnostic genes based on expression data. Bioinformatics 19 12 (2003) 1578-1579
    • (2003) Bioinformatics , vol.19 , Issue.12 , pp. 1578-1579
    • Su, Y.1    Murali, T.M.2    Pavlovic, V.3    Schaffer, M.4    Kasif, S.5
  • 43
    • 73449126391 scopus 로고    scopus 로고
    • Theory and practice for efficient genetic programming. PhD thesis, Faculty of Sciences, University of Lausanne, Switzerland;
    • Vanneschi L. Theory and practice for efficient genetic programming. PhD thesis, Faculty of Sciences, University of Lausanne, Switzerland; 2004.
    • (2004)
    • Vanneschi, L.1
  • 45
    • 34547691339 scopus 로고    scopus 로고
    • Extracting gene regulation information for cancer classification
    • Wang H.Q., Wong H.S., Huang D.S., and Shu J. Extracting gene regulation information for cancer classification. Pattern Recognition 40 12 (2007) 3379-3392
    • (2007) Pattern Recognition , vol.40 , Issue.12 , pp. 3379-3392
    • Wang, H.Q.1    Wong, H.S.2    Huang, D.S.3    Shu, J.4
  • 46
    • 73449101665 scopus 로고    scopus 로고
    • Weka. A multi-task machine learning software developed by Waikato University, 2006. See 〈www.cs.waikato.ac.nz/ml/weka〉.
    • Weka. A multi-task machine learning software developed by Waikato University, 2006. See 〈www.cs.waikato.ac.nz/ml/weka〉.
  • 48
    • 34247214462 scopus 로고    scopus 로고
    • Feature selection and molecular classification of cancer using genetic programming
    • Yu J., Yu J., Almal A.A., Dhanasekaran S.M., Ghosh D., Worzel W.P., et al. Feature selection and molecular classification of cancer using genetic programming. Neoplasia 9 4 (2007) 292-303
    • (2007) Neoplasia , vol.9 , Issue.4 , pp. 292-303
    • Yu, J.1    Yu, J.2    Almal, A.A.3    Dhanasekaran, S.M.4    Ghosh, D.5    Worzel, W.P.6


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