Exploration of homodimer receptor: Homodimer protein interactions

International Journal of Bioinformatics Research and Applications

Volumn 5, Issue 4, 2009, Pages 447-457

  Vera, Julio ^a   Kwon, Taesoo ^b   Schmitz, Ulf ^a   Kolch, Walter ^c,d   Wolkenhauer, Olaf ^a  

^a UNIVERSITY OF ROSTOCK   (Germany)

^b Korea National Institute of Health   (South Korea)

^c BEATSON INSTITUTE FOR CANCER RESEARCH   (United Kingdom)

^d UNIVERSITY OF GLASGOW   (United Kingdom)

Author keywords

Cell signalling; Homodimerisation; Protein protein interactions; Receptor; Systems biology.; Transducer

Indexed keywords

PROTEIN;

ARTICLE; BINDING SITE; BIOLOGY; CHEMISTRY; DIMERIZATION; HUMAN; METABOLISM; METHODOLOGY; PROTEIN MULTIMERIZATION;

BINDING SITES; COMPUTATIONAL BIOLOGY; DIMERIZATION; HUMANS; PROTEIN MULTIMERIZATION; PROTEINS;

EID: 73349107140     PISSN: 17445485     EISSN: 17445493     Source Type: Journal    
DOI: 10.1504/IJBRA.2009.027518     Document Type: Article

References (20)

1. Amoutzias, G.D., Pichler, E.E., Mian, N., De Graaf, D., Imsiridou, A., Robinson-Rechavi, M., Bornberg-Bauer, E., Robertson, D.L. and Oliver, S.G. (2007) 'A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network', BMC Systems Biology, Vol. 1, p.34.
2. Amoutzias, G.D., Robertson, D.L. and Bornberg-Bauer, E. (2004) 'The evolution of protein interaction networks in regulatory proteins', Comp. Funct. Genomics, Vol. 5, No. 1, pp.79-84.
3. Ashburner, M., Ball, C.A., Blake, J.A., Botstein, D., Butler, H., Cherry, J.M., Davis, A.P., Dolinski, K., Dwight, S.S., Eppig, J.T., Harris, M.A., Hill, D.P., Issel-Tarver, L., Kasarskis, A., Lewis, S., Matese, J.C., Richardson, J.E., Ringwald, M., Rubin, G.M. and Sherlock, G. (2000) 'Gene ontology: Tool for the unification of biology. The gene ontology consortium', Nat Genet., Vol. 25, pp.25-29.
4. Ashkenazi, M., Bader, G.D., Kuchinsky, A., Moshelion, M. and States, D.J. (2008) 'Cytoscape ESP: simple search of complex biological networks', Bioinformatics, Vol. 24, No. 12, pp.1465, 1466.
5. Bader, G.D. and Hogue, C.W. (2000) 'BIND-A data specification for storing and describing biomolecular interactions, molecular complexes and pathways', Bioinformatics, Vol. 16, pp.465-477.
6. Bader, G.D., Betel, D. and Hogue, C.W. (2003) 'BIND: The biomolecular interaction network database', Nucleic Acids Res., Vol. 31, pp.248-250.
7. Dhe-Paganon, S., Ottinger, E.A., Nolte, R.T., Eck, M.J. and Shoelson, S.E. (1999) 'Crystal structure of the pleckstrin homology-phosphotyrosine binding (PH-PTB) targeting region of insulin receptor substrate 1', PNAS 96, pp.8378-8383.
8. Donaldson, I., Martin, J., de Bruijn, B., Wolting, C., Lay, V., Tuekam, B., Zhang, S., Baskin, B., Bader, G.D., Michalickova, K., Pawson, T. and Hogue, C.W. (2003) 'PreBIND and Textomy-mining the biomedical literature for protein-protein interactions using a support vector machine', BMC Bioinformatics, Vol. 4, p.11.
9. Ferrajoli, A., Faderl, S., Ravandi, F. and Estrov, Z. (2006) 'The JAK-STAT pathway: A therapeutic target in hematological malignancies', Curr. Cancer Drug Targets, Vol. 6, pp.671-679.
10. Heldin, C.H. (1995) 'Dimerization of cell surface receptors in signal transduction', Cell, Vol. 80, pp.213-223.
11. Idriss, H.T. and Naismith, J.H. (2000) 'TNF alpha and the TNF receptor superfamily: structure-function relationship(s)', Microsc. Res. Tech., Vol. 50, No. 3, pp.184-195.
12. Klemm, J.D., Schreiber, S.L. and Crabtree, G.R. (1998) 'Dimerisation as a regulatory mechanism in signal transduction', Annu. Rev. Immunol., Vol. 16, pp.569-592.
13. Marchler-Bauer, A., Addess, K.J., Chappey, C., Geer, L., Madej, T., Matsuo, Y., Wang, Y. and Bryant, S.H. (1999) 'MMDB: Entrez's 3D structure database', Nucleic Acids Res., Vol. 27, No. 1, pp.240-243.
14. Massagué, J. and Gomis, R. (2006) 'The logic of TGFβ signaling', FEBS Letters, Vol. 580, No. 12, pp.2811-2820.
15. Mishra, G.R., Suresh, M., Kumaran, K., Kannabiran, N., Suresh, S., Bala, P., Shivakumar, K., Anuradha, N., Reddy, R., Raghavan, T.M., Menon, S., Hanumanthu, G., Gupta, M., Upendran, S., Gupta, S., Mahesh, M., Jacob, B., Mathew, P., Chatterjee, P., Arun, K.S., Sharma, S., Chandrika, K.N., Deshpande, N., Palvankar, K., Raghavnath, R., Krishnakanth, R., Karathia, H., Rekha, B., Nayak, R., Vishnupriya, G., Kumar, H.G., Nagini, M., Kumar, G.S., Jose, R., Deepthi, P., Mohan, S.S., Gandhi, T.K., Harsha, H.C., Deshpande, K.S., Sarker, M., Prasad, T.S. and Pandey, A. (2006) 'Human protein reference database-2006 update', Nucleic Acids Res., Vol. 34, Database issue, pp.D411-D414.
16. Reich, Z, Boniface, J.J., Lyons, D.S., Borochov, N., Wachtel, E.J. and Davis, M.M. (1997) 'Ligand-specific oligomerisation of T-cell receptor molecules', Nature, Vol. 387, pp.617-620.
17. Schlessinger, J. (1988) 'Signal transduction by allosteric receptor oligomerization', Trends Biol. Sci., Vol. 13, pp.443-447.
18. Shuai, K., Horvath, C.M., Huang, L.H., Qureshi, S.A., Cowburn, D. and Darnell, J.E. (1994) 'Interferon activation of the transcription factor Stat91 involves dimerization through SH2-phosphotyrosyl peptide interactions', Cell, Vol. 76, pp.821-828.
19. Uyemura, T., Takagi, , H., Yanagida, T. and Sakoy, Y. (2005) 'Single-molecule analysis of epidermal growth factor signaling that leads to ultrasensitive calcium response', Biophysical Journal, Vol. 88, pp.3720-3730.
20. Vera, J., Millat, T., Kolch, W. and Wolkenhauer, O. (2008) 'Dynamics of receptor and protein transducer homodimerisation', BMC Systems Biology, Vol. 2, p.92.