-
2
-
-
0036359736
-
The evolution of gene duplicates
-
full-text. 11931235
-
The evolution of gene duplicates. SP Otto P Yong, Adv Genet 2002 46 451 483 full-text 11931235
-
(2002)
Adv Genet
, vol.46
, pp. 451-483
-
-
Otto, S.P.1
Yong, P.2
-
3
-
-
0000842626
-
The bar "gene" a duplication
-
10.1126/science.83.2148.210. 17796454
-
The bar "gene" a duplication. CB Bridges, Science 1936 83 210 211 10.1126/science.83.2148.210 17796454
-
(1936)
Science
, vol.83
, pp. 210-211
-
-
Bridges, C.B.1
-
4
-
-
0037500141
-
Evolution by gene duplication: An update
-
DOI 10.1016/S0169-5347(03)00033-8
-
Evolution by gene duplication: an update. J Zhang, Trends Ecol Evol 2003 18 292 298 10.1016/S0169-5347(03)00033-8 (Pubitemid 36631749)
-
(2003)
Trends in Ecology and Evolution
, vol.18
, Issue.6
, pp. 292-298
-
-
Zhang, J.1
-
5
-
-
56549119570
-
Turning a hobby into a job: How duplicated genes find new functions
-
10.1038/nrg2482. 19015656
-
Turning a hobby into a job: how duplicated genes find new functions. GC Conant KH Wolfe, Nat Rev Genet 2008 9 938 950 10.1038/nrg2482 19015656
-
(2008)
Nat Rev Genet
, vol.9
, pp. 938-950
-
-
Conant, G.C.1
Wolfe, K.H.2
-
6
-
-
34247874698
-
Current topics in genome evolution: Molecular mechanisms of new gene formation
-
10.1007/s00018-006-6453-4. 17192808
-
Current topics in genome evolution: molecular mechanisms of new gene formation. DV Babushok EM Ostertag HHJ Kazazian, Cell Mol Life Sci 2007 64 542 554 10.1007/s00018-006-6453-4 17192808
-
(2007)
Cell Mol Life Sci
, vol.64
, pp. 542-554
-
-
Babushok, D.V.1
Ostertag, E.M.2
Kazazian, H.H.J.3
-
7
-
-
36549038087
-
Consequences of genome duplication
-
10.1016/j.gde.2007.09.007. 18006297
-
Consequences of genome duplication. M Semon KH Wolfe, Curr Opin Genet Dev 2007 17 505 512 10.1016/j.gde.2007.09.007 18006297
-
(2007)
Curr Opin Genet Dev
, vol.17
, pp. 505-512
-
-
Semon, M.1
Wolfe, K.H.2
-
8
-
-
57749177443
-
RNA-based gene duplication: Mechanistic and evolutionary insights
-
10.1038/nrg2487. 19030023
-
RNA-based gene duplication: mechanistic and evolutionary insights. H Kaessmann N Vinckenbosch M Long, Nat Rev Genet 2009 10 19 31 10.1038/nrg2487 19030023
-
(2009)
Nat Rev Genet
, vol.10
, pp. 19-31
-
-
Kaessmann, H.1
Vinckenbosch, N.2
Long, M.3
-
9
-
-
33646559207
-
On the formation of novel genes by duplication in the Caenorhabditis elegans genome
-
10.1093/molbev/msj114. 16500928
-
On the formation of novel genes by duplication in the Caenorhabditis elegans genome. V Katju M Lynch, Mol Biol Evol 2006 23 1056 1067 10.1093/molbev/msj114 16500928
-
(2006)
Mol Biol Evol
, vol.23
, pp. 1056-1067
-
-
Katju, V.1
Lynch, M.2
-
10
-
-
57149114784
-
The evolutionary position of subfunctionalization, downgraded
-
full-text. 18756075
-
The evolutionary position of subfunctionalization, downgraded. M Freeling, Genome Dyn 2008 4 25 40 full-text 18756075
-
(2008)
Genome Dyn
, vol.4
, pp. 25-40
-
-
Freeling, M.1
-
11
-
-
20044369186
-
An adaptive radiation model for the origin of new gene functions
-
10.1038/ng1579. 15920518
-
An adaptive radiation model for the origin of new gene functions. MP Francino, Nat Genet 2005 37 573 577 10.1038/ng1579 15920518
-
(2005)
Nat Genet
, vol.37
, pp. 573-577
-
-
Francino, M.P.1
-
13
-
-
0038157152
-
Dosage sensitivity and the evolution of gene families in yeast
-
10.1038/nature01771. 12853957
-
Dosage sensitivity and the evolution of gene families in yeast. B Papp C Pal LD Hurst, Nature 2003 424 194 197 10.1038/nature01771 12853957
-
(2003)
Nature
, vol.424
, pp. 194-197
-
-
Papp, B.1
Pal, C.2
Hurst, L.D.3
-
14
-
-
55749104408
-
Gene dosage and gene duplicability
-
10.1534/genetics.108.090936. 18689880
-
Gene dosage and gene duplicability. W Qian J Zhang, Genetics 2008 179 2319 2324 10.1534/genetics.108.090936 18689880
-
(2008)
Genetics
, vol.179
, pp. 2319-2324
-
-
Qian, W.1
Zhang, J.2
-
15
-
-
51649110669
-
A compromise required by gene sharing enables survival: Implications for evolution of new enzyme activities
-
10.1073/pnas.0804804105. 18757760
-
A compromise required by gene sharing enables survival: Implications for evolution of new enzyme activities. SY McLoughlin SD Copley, Proc Natl Acad Sci USA 2008 105 13497 13502 10.1073/pnas.0804804105 18757760
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 13497-13502
-
-
McLoughlin, S.Y.1
Copley, S.D.2
-
16
-
-
0037396292
-
Enzymes with extra talents: Moonlighting functions and catalytic promiscuity
-
10.1016/S1367-5931(03)00032-2. 12714060
-
Enzymes with extra talents: moonlighting functions and catalytic promiscuity. SD Copley, Curr Opin Chem Biol 2003 7 265 272 10.1016/S1367- 5931(03)00032-2 12714060
-
(2003)
Curr Opin Chem Biol
, vol.7
, pp. 265-272
-
-
Copley, S.D.1
-
17
-
-
33845874632
-
Evaluation of whether accelerated protein evolution in chordates has occurred before, after, or simultaneously with gene duplication
-
10.1093/molbev/msl162. 17065596
-
Evaluation of whether accelerated protein evolution in chordates has occurred before, after, or simultaneously with gene duplication. CR Johnston C O'Dushlaine DA Fitzpatrick RJ Edwards DC Shields, Mol Biol Evol 2007 24 315 323 10.1093/molbev/msl162 17065596
-
(2007)
Mol Biol Evol
, vol.24
, pp. 315-323
-
-
Johnston, C.R.1
O'Dushlaine, C.2
Fitzpatrick, D.A.3
Edwards, R.J.4
Shields, D.C.5
-
18
-
-
33747066766
-
Allelic divergence precedes and promotes gene duplication
-
16817530
-
Allelic divergence precedes and promotes gene duplication. SR Proulx PC Phillips, Evolution 2006 60 881 892 16817530
-
(2006)
Evolution
, vol.60
, pp. 881-892
-
-
Proulx, S.R.1
Phillips, P.C.2
-
19
-
-
34250325855
-
Protein subcellular relocalization: A new perspective on the origin of novel genes
-
10.1016/j.tree.2007.05.002. 17507112
-
Protein subcellular relocalization: a new perspective on the origin of novel genes. SA Byun-McKay R Geeta, Trends Ecol Evol 2007 22 338 344 10.1016/j.tree.2007.05.002 17507112
-
(2007)
Trends Ecol Evol
, vol.22
, pp. 338-344
-
-
Byun-Mckay, S.A.1
Geeta, R.2
-
20
-
-
45549083763
-
Functional diversification of duplicate genes through subcellular adaptation of encoded proteins
-
10.1186/gb-2008-9-3-r54. 18336717
-
Functional diversification of duplicate genes through subcellular adaptation of encoded proteins. AC Marques N Vinckenbosch D Brawand H Kaessmann, Genome Biol 2008 9 54 10.1186/gb-2008-9-3-r54 18336717
-
(2008)
Genome Biol
, vol.9
, pp. 1854
-
-
Marques, A.C.1
Vinckenbosch, N.2
Brawand, D.3
Kaessmann, H.4
-
21
-
-
50849144657
-
Mitochondrial targeting adaptation of the hominoid-specific glutamate dehydrogenase driven by positive Darwinian selection
-
10.1371/journal.pgen.1000150. 18688271
-
Mitochondrial targeting adaptation of the hominoid-specific glutamate dehydrogenase driven by positive Darwinian selection. L Rosso AC Marques AS Reichert H Kaessmann, PLoS Genet 2008 4 1000150 10.1371/journal.pgen.1000150 18688271
-
(2008)
PLoS Genet
, vol.4
, pp. 51000150
-
-
Rosso, L.1
Marques, A.C.2
Reichert, A.S.3
Kaessmann, H.4
-
22
-
-
45849119853
-
Birth and rapid subcellular adaptation of a hominoid-specific CDC14 protein
-
10.1371/journal.pbio.0060140. 18547142
-
Birth and rapid subcellular adaptation of a hominoid-specific CDC14 protein. L Rosso AC Marques M Weier N Lambert MA Lambot P Vanderhaeghen H Kaessmann, PLoS Biol 2008 6 140 10.1371/journal.pbio.0060140 18547142
-
(2008)
PLoS Biol
, vol.6
, pp. 5140
-
-
Rosso, L.1
Marques, A.C.2
Weier, M.3
Lambert, N.4
Lambot, M.A.5
Vanderhaeghen, P.6
Kaessmann, H.7
-
23
-
-
34250811284
-
Mitochondrial-nuclear communications
-
10.1146/annurev.biochem.76.052305.091720. 17227225
-
Mitochondrial-nuclear communications. MT Ryan NJ Hoogenraad, Annu Rev Biochem 2007 76 701 722 10.1146/annurev.biochem.76.052305.091720 17227225
-
(2007)
Annu Rev Biochem
, vol.76
, pp. 701-722
-
-
Ryan, M.T.1
Hoogenraad, N.J.2
-
24
-
-
0036613509
-
Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution
-
10.1038/ng902. 12032571
-
Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution. X Gu Y Wang J Gu, Nat Genet 2002 31 205 209 10.1038/ng902 12032571
-
(2002)
Nat Genet
, vol.31
, pp. 205-209
-
-
Gu, X.1
Wang, Y.2
Gu, J.3
-
25
-
-
26444603772
-
Two rounds of whole genome duplication in the ancestral vertebrate
-
10.1371/journal.pbio.0030314. 16128622
-
Two rounds of whole genome duplication in the ancestral vertebrate. P Dehal JL Boore, PLoS Biol 2005 3 314 10.1371/journal.pbio.0030314 16128622
-
(2005)
PLoS Biol
, vol.3
, pp. 5314
-
-
Dehal, P.1
Boore, J.L.2
-
26
-
-
59849091566
-
The life and death of gene families
-
10.1002/bies.080085. 19153999
-
The life and death of gene families. JP Demuth MW Hahn, Bioessays 2009 31 29 39 10.1002/bies.080085 19153999
-
(2009)
Bioessays
, vol.31
, pp. 29-39
-
-
Demuth, J.P.1
Hahn, M.W.2
-
27
-
-
0036085460
-
Cellular roles of DNA topoisomerases: A molecular perspective
-
10.1038/nrm831. 12042765
-
Cellular roles of DNA topoisomerases: a molecular perspective. JC Wang, Nat Rev Mol Cell Biol 2002 3 430 440 10.1038/nrm831 12042765
-
(2002)
Nat Rev Mol Cell Biol
, vol.3
, pp. 430-440
-
-
Wang, J.C.1
-
28
-
-
54849425967
-
Mitochondrial topoisomerase i sites in the regulatory D-loop region of mitochondrial DNA
-
10.1021/bi800774b. 18826252
-
Mitochondrial topoisomerase I sites in the regulatory D-loop region of mitochondrial DNA. H Zhang Y Pommier, Biochemistry 2008 47 11196 11203 10.1021/bi800774b 18826252
-
(2008)
Biochemistry
, vol.47
, pp. 11196-11203
-
-
Zhang, H.1
Pommier, Y.2
-
29
-
-
0037126059
-
Dual localization of human DNA topoisomerase IIIalpha to mitochondria and nucleus
-
10.1073/pnas.192449499. 12209014
-
Dual localization of human DNA topoisomerase IIIalpha to mitochondria and nucleus. Y Wang YL Lyu JC Wang, Proc Natl Acad Sci USA 2002 99 12114 12119 10.1073/pnas.192449499 12209014
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 12114-12119
-
-
Wang, Y.1
Lyu, Y.L.2
Wang, J.C.3
-
30
-
-
13544268324
-
Drosophila melanogaster topoisomerase IIIalpha preferentially relaxes a positively or negatively supercoiled bubble substrate and is essential during development
-
10.1074/jbc.M411337200. 15537633
-
Drosophila melanogaster topoisomerase IIIalpha preferentially relaxes a positively or negatively supercoiled bubble substrate and is essential during development. JL Plank SH Chu JR Pohlhaus T Wilson-Sali TS Hsieh, J Biol Chem 2005 280 3564 3573 10.1074/jbc.M411337200 15537633
-
(2005)
J Biol Chem
, vol.280
, pp. 3564-3573
-
-
Plank, J.L.1
Chu, S.H.2
Pohlhaus, J.R.3
Wilson-Sali, T.4
Hsieh, T.S.5
-
31
-
-
0033887456
-
Phylogenetic classification of prokaryotic and eukaryotic Sir2-like proteins
-
10.1006/bbrc.2000.3000. 10873683
-
Phylogenetic classification of prokaryotic and eukaryotic Sir2-like proteins. RA Frye, Biochem Biophys Res Commun 2000 273 793 798 10.1006/bbrc.2000.3000 10873683
-
(2000)
Biochem Biophys Res Commun
, vol.273
, pp. 793-798
-
-
Frye, R.A.1
-
32
-
-
26244436281
-
Evolutionarily conserved and nonconserved cellular localizations and functions of human SIRT proteins
-
10.1091/mbc.E05-01-0033. 16079181
-
Evolutionarily conserved and nonconserved cellular localizations and functions of human SIRT proteins. E Michishita JY Park JM Burneskis JC Barrett I Horikawa, Mol Biol Cell 2005 16 4623 4635 10.1091/mbc.E05-01-0033 16079181
-
(2005)
Mol Biol Cell
, vol.16
, pp. 4623-4635
-
-
Michishita, E.1
Park, J.Y.2
Burneskis, J.M.3
Barrett, J.C.4
Horikawa, I.5
-
33
-
-
2942564591
-
Sirtuins: Sir2-related NAD-dependent protein deacetylases
-
10.1186/gb-2004-5-5-224. 15128440
-
Sirtuins: Sir2-related NAD-dependent protein deacetylases. BJ North E Verdin, Genome Biol 2004 5 224 10.1186/gb-2004-5-5-224 15128440
-
(2004)
Genome Biol
, vol.5
, pp. 224
-
-
North, B.J.1
Verdin, E.2
-
34
-
-
0034331238
-
Cloning and characterization of two mouse genes with homology to the yeast Sir2 gene
-
10.1006/geno.2000.6360. 11056054
-
Cloning and characterization of two mouse genes with homology to the yeast Sir2 gene. YH Yang YH Chen CY Zhang MA Nimmakayalu DC Ward S Weissman, Genomics 2000 69 355 369 10.1006/geno.2000.6360 11056054
-
(2000)
Genomics
, vol.69
, pp. 355-369
-
-
Yang, Y.H.1
Chen, Y.H.2
Zhang, C.Y.3
Nimmakayalu, M.A.4
Ward, D.C.5
Weissman, S.6
-
35
-
-
34547894695
-
Reconstructing the evolution of the mitochondrial ribosomal proteome
-
10.1093/nar/gkm441. 17604309
-
Reconstructing the evolution of the mitochondrial ribosomal proteome. P Smits JA Smeitink LP van den Heuvel MA Huynen TJ Ettema, Nucleic Acids Res 2007 35 4686 4703 10.1093/nar/gkm441 17604309
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 4686-4703
-
-
Smits, P.1
Smeitink, J.A.2
Den Van, P.H.L.3
Huynen, M.A.4
Ettema, T.J.5
-
36
-
-
0032534869
-
Identification and characterization of human cDNAs specific to BCS1, PET112, SCO1, COX15, and COX11, five genes involved in the formation and function of the mitochondrial respiratory chain
-
10.1006/geno.1998.5580. 9878253
-
Identification and characterization of human cDNAs specific to BCS1, PET112, SCO1, COX15, and COX11, five genes involved in the formation and function of the mitochondrial respiratory chain. V Petruzzella V Tiranti P Fernandez P Ianna R Carrozzo M Zeviani, Genomics 1998 54 494 504 10.1006/geno.1998.5580 9878253
-
(1998)
Genomics
, vol.54
, pp. 494-504
-
-
Petruzzella, V.1
Tiranti, V.2
Fernandez, P.3
Ianna, P.4
Carrozzo, R.5
Zeviani, M.6
-
37
-
-
0031799733
-
Mitochondria-targeting sequence, a multi-role sorting sequence recognized at all steps of protein import into mitochondria
-
9603986
-
Mitochondria-targeting sequence, a multi-role sorting sequence recognized at all steps of protein import into mitochondria. T Omura, J Biochem 1998 123 1010 1016 9603986
-
(1998)
J Biochem
, vol.123
, pp. 1010-1016
-
-
Omura, T.1
-
38
-
-
0034697980
-
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
-
10.1006/jmbi.2000.3903. 10891285
-
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. O Emanuelsson H Nielsen S Brunak G von Heijne, J Mol Biol 2000 300 1005 1016 10.1006/jmbi.2000.3903 10891285
-
(2000)
J Mol Biol
, vol.300
, pp. 1005-1016
-
-
Emanuelsson, O.1
Nielsen, H.2
Brunak, S.3
Von Heijne, G.4
-
39
-
-
0038450250
-
Phosphorylation regulates the subcellular location and activity of the snail transcriptional repressor
-
10.1128/MCB.23.14.5078-5089.2003. 12832491
-
Phosphorylation regulates the subcellular location and activity of the snail transcriptional repressor. D Dominguez B Montserrat-Sentis A Virgos-Soler S Guaita J Grueso M Porta I Puig J Baulida C Franci A Garcia de Herreros, Mol Cell Biol 2003 23 5078 5089 10.1128/MCB.23.14.5078-5089.2003 12832491
-
(2003)
Mol Cell Biol
, vol.23
, pp. 5078-5089
-
-
Dominguez, D.1
Montserrat-Sentis, B.2
Virgos-Soler, A.3
Guaita, S.4
Grueso, J.5
Porta, M.6
Puig, I.7
Baulida, J.8
Franci, C.9
De Herreros, A.G.10
-
40
-
-
33646362551
-
Systematic identification of human mitochondrial disease genes through integrative genomics
-
10.1038/ng1776. 16582907
-
Systematic identification of human mitochondrial disease genes through integrative genomics. S Calvo M Jain X Xie SA Sheth B Chang OA Goldberger A Spinazzola M Zeviani SA Carr VK Mootha, Nat Genet 2006 38 576 582 10.1038/ng1776 16582907
-
(2006)
Nat Genet
, vol.38
, pp. 576-582
-
-
Calvo, S.1
Jain, M.2
Xie, X.3
Sheth, S.A.4
Chang, B.5
Goldberger, O.A.6
Spinazzola, A.7
Zeviani, M.8
Carr, S.A.9
Mootha, V.K.10
-
41
-
-
33644876911
-
MitoP2: The mitochondrial proteome database - Now including mouse data
-
10.1093/nar/gkj127. 16381964
-
MitoP2: the mitochondrial proteome database - now including mouse data. H Prokisch C Andreoli U Ahting K Heiss A Ruepp C Scharfe T Meitinger, Nucleic Acids Res 2006 34 705 11 10.1093/nar/gkj127 16381964
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 4705-11
-
-
Prokisch, H.1
Andreoli, C.2
Ahting, U.3
Heiss, K.4
Ruepp, A.5
Scharfe, C.6
Meitinger, T.7
-
42
-
-
0036187351
-
Extent of gene duplication in the genomes of Drosophila, nematode, and yeast
-
11861885
-
Extent of gene duplication in the genomes of Drosophila, nematode, and yeast. Z Gu A Cavalcanti FC Chen P Bouman WH Li, Mol Biol Evol 2002 19 256 262 11861885
-
(2002)
Mol Biol Evol
, vol.19
, pp. 256-262
-
-
Gu, Z.1
Cavalcanti, A.2
Chen, F.C.3
Bouman, P.4
Li, W.H.5
-
43
-
-
0034623005
-
T-Coffee: A novel method for fast and accurate multiple sequence alignment
-
10.1006/jmbi.2000.4042. 10964570
-
T-Coffee: A novel method for fast and accurate multiple sequence alignment. C Notredame DG Higgins J Heringa, J Mol Biol 2000 302 205 217 10.1006/jmbi.2000.4042 10964570
-
(2000)
J Mol Biol
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.G.2
Heringa, J.3
-
44
-
-
45949109669
-
MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences
-
10.1093/bib/bbn017. 18417537
-
MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. S Kumar M Nei J Dudley K Tamura, Brief Bioinform 2008 9 299 306 10.1093/bib/bbn017 18417537
-
(2008)
Brief Bioinform
, vol.9
, pp. 299-306
-
-
Kumar, S.1
Nei, M.2
Dudley, J.3
Tamura, K.4
|