메뉴 건너뛰기




Volumn 4, Issue 8, 2008, Pages

Mitochondrial targeting adaptation of the hominoid-specific glutamate dehydrogenase driven by positive darwinian selection

Author keywords

[No Author keywords available]

Indexed keywords

GLUTAMATE DEHYDROGENASE; GLUTAMIC ACID; LYSINE; ARABIDOPSIS PROTEIN; GLUD2 PROTEIN, HUMAN; GLUTAMATE DEHYDROGENASE (NADP); SIGNAL PEPTIDE;

EID: 50849144657     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1000150     Document Type: Article
Times cited : (55)

References (36)
  • 1
    • 0003421005 scopus 로고    scopus 로고
    • Sunderland MA: Sinauer Associates
    • Li W-H (1997) Molecular evolution. Sunderland MA: Sinauer Associates.
    • (1997) Molecular evolution
    • Li, W.-H.1
  • 3
    • 0036245495 scopus 로고    scopus 로고
    • Segmental duplications and the evolution of the primate genome
    • Samonte RV, Eichler EE (2002) Segmental duplications and the evolution of the primate genome. Nature Rev Genet 3: 65-72.
    • (2002) Nature Rev Genet , vol.3 , pp. 65-72
    • Samonte, R.V.1    Eichler, E.E.2
  • 4
    • 0242354129 scopus 로고    scopus 로고
    • The origin of new genes: Glimpses from the young and old
    • Long M, Betran E, Thornton K, Wang W (2003) The origin of new genes: glimpses from the young and old. Nature Rev Genet 4: 865-875.
    • (2003) Nature Rev Genet , vol.4 , pp. 865-875
    • Long, M.1    Betran, E.2    Thornton, K.3    Wang, W.4
  • 5
    • 0025864962 scopus 로고
    • Retroposons-seeds of evolution
    • Brosius J (1991) Retroposons-seeds of evolution. Science 251: 753.
    • (1991) Science , vol.251 , pp. 753
    • Brosius, J.1
  • 7
    • 6944242766 scopus 로고    scopus 로고
    • Birth and adaptive evolution of a hominoid gene that supports high neurotransmitter flux
    • Burki F, Kaessmann H (2004) Birth and adaptive evolution of a hominoid gene that supports high neurotransmitter flux. Nature Genet 36: 1061-1063.
    • (2004) Nature Genet , vol.36 , pp. 1061-1063
    • Burki, F.1    Kaessmann, H.2
  • 8
    • 0035895567 scopus 로고    scopus 로고
    • Birth of two chimeric genes in the Hominidae lineage
    • Courseaux A, Nahon JL (2001) Birth of two chimeric genes in the Hominidae lineage. Science 291: 1293-1297.
    • (2001) Science , vol.291 , pp. 1293-1297
    • Courseaux, A.1    Nahon, J.L.2
  • 9
    • 0035807336 scopus 로고    scopus 로고
    • Positive selection of a gene family during the emergence of humans and African apes
    • Johnson ME, Viggiano L, Bailey JA, Abdul-Rauf M, Goodwin G, et al. (2001) Positive selection of a gene family during the emergence of humans and African apes. Nature 413: 514-519.
    • (2001) Nature , vol.413 , pp. 514-519
    • Johnson, M.E.1    Viggiano, L.2    Bailey, J.A.3    Abdul-Rauf, M.4    Goodwin, G.5
  • 11
    • 33744734662 scopus 로고    scopus 로고
    • Origination and evolution of a human-specific transmembrane protein gene, c1orf37-dup
    • Yu H, Jiang H, Zhou Q, Yang J, Cun Y, et al. (2006) Origination and evolution of a human-specific transmembrane protein gene, c1orf37-dup. Hum Mol Genet 15: 1870-1875.
    • (2006) Hum Mol Genet , vol.15 , pp. 1870-1875
    • Yu, H.1    Jiang, H.2    Zhou, Q.3    Yang, J.4    Cun, Y.5
  • 12
    • 77956904836 scopus 로고
    • Glutamate dehydrogenase
    • Boyer PD, ed, New York: Academic Press. pp
    • Smith EL (1975) Glutamate dehydrogenase. In: Boyer PD, ed. The Enzymes. New York: Academic Press. pp 293-367.
    • (1975) The Enzymes , pp. 293-367
    • Smith, E.L.1
  • 13
    • 0038403827 scopus 로고    scopus 로고
    • Study of structure-function relationships in human glutamate dehydrogenases reveals novel molecular mechanisms for the regulation of the nerve tissue-specific (GLUD2) isoenzyme
    • Plaitakis A, Spanaki C, Mastorodemos V, Zaganas I (2003) Study of structure-function relationships in human glutamate dehydrogenases reveals novel molecular mechanisms for the regulation of the nerve tissue-specific (GLUD2) isoenzyme. Neurochem Int 43: 401-410.
    • (2003) Neurochem Int , vol.43 , pp. 401-410
    • Plaitakis, A.1    Spanaki, C.2    Mastorodemos, V.3    Zaganas, I.4
  • 14
    • 34147195565 scopus 로고    scopus 로고
    • Properties and molecular evolution of human GLUD2 (neural and testicular tissue-specific) glutamate dehydrogenase
    • Kanavouras K, Mastorodemos V, Borompokas N, Spanaki C, Plaitakis A (2007) Properties and molecular evolution of human GLUD2 (neural and testicular tissue-specific) glutamate dehydrogenase. J Neurosci Res 85: 1101-1109.
    • (2007) J Neurosci Res , vol.85 , pp. 1101-1109
    • Kanavouras, K.1    Mastorodemos, V.2    Borompokas, N.3    Spanaki, C.4    Plaitakis, A.5
  • 15
    • 0033788590 scopus 로고    scopus 로고
    • Nerve tissue-specific (GLUD2) and housekeeping (GLUD1) human glutamate dehydrogenases are regulated by distinct allosteric mechanisms: Implications for biologic function
    • Plaitakis A, Metaxari M, Shashidharan P (2000) Nerve tissue-specific (GLUD2) and housekeeping (GLUD1) human glutamate dehydrogenases are regulated by distinct allosteric mechanisms: implications for biologic function. J Neurochem 75: 1862-1869.
    • (2000) J Neurochem , vol.75 , pp. 1862-1869
    • Plaitakis, A.1    Metaxari, M.2    Shashidharan, P.3
  • 16
    • 12244298900 scopus 로고    scopus 로고
    • Molecular basis of human glutamate dehydrogenase regulation under changing energy demands
    • Mastorodemos V, Zaganas I, Spanaki C, Bessa M, Plaitakis A (2005) Molecular basis of human glutamate dehydrogenase regulation under changing energy demands. J Neurosci Res 79: 65-73.
    • (2005) J Neurosci Res , vol.79 , pp. 65-73
    • Mastorodemos, V.1    Zaganas, I.2    Spanaki, C.3    Bessa, M.4    Plaitakis, A.5
  • 17
    • 2942589051 scopus 로고    scopus 로고
    • Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences
    • Small I, Peeters N, Legeai F, Lurin C (2004) Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences. Proteomics 4: 1581-1590.
    • (2004) Proteomics , vol.4 , pp. 1581-1590
    • Small, I.1    Peeters, N.2    Legeai, F.3    Lurin, C.4
  • 18
    • 0025360581 scopus 로고
    • The mitochondrial protein import apparatus
    • Pfanner N, Neupert W (1990) The mitochondrial protein import apparatus. Annu Rev Biochem 59: 331-353.
    • (1990) Annu Rev Biochem , vol.59 , pp. 331-353
    • Pfanner, N.1    Neupert, W.2
  • 19
    • 0030969942 scopus 로고    scopus 로고
    • Protein import into mitochondria
    • Neupert W (1997) Protein import into mitochondria. Annu Rev Biochem 66: 863-917.
    • (1997) Annu Rev Biochem , vol.66 , pp. 863-917
    • Neupert, W.1
  • 21
    • 34250325855 scopus 로고    scopus 로고
    • Protein subcellular relocalization: A new perspective on the origin of novel genes
    • Byun-McKay SA, Geeta R (2007) Protein subcellular relocalization: a new perspective on the origin of novel genes. Trends Ecol Evol 22: 338-344.
    • (2007) Trends Ecol Evol , vol.22 , pp. 338-344
    • Byun-McKay, S.A.1    Geeta, R.2
  • 22
    • 0033133729 scopus 로고    scopus 로고
    • Mitochondrial-matrix proteins at unexpected locations: Are they exported?
    • Soltys BJ, Gupta RS (1999) Mitochondrial-matrix proteins at unexpected locations: are they exported? Trends Biochem Sci 24: 174-177.
    • (1999) Trends Biochem Sci , vol.24 , pp. 174-177
    • Soltys, B.J.1    Gupta, R.S.2
  • 23
    • 0028341884 scopus 로고
    • Novel human glutamate dehydrogenase expressed in neural and testicular tissues and encoded by an X-linked intronless gene
    • Shashidharan P, Michaelidis TM, Robakis NK, Kresovali A, Papamatheakis J, et al. (1994) Novel human glutamate dehydrogenase expressed in neural and testicular tissues and encoded by an X-linked intronless gene. J Biol Chem 269: 16971-16976.
    • (1994) J Biol Chem , vol.269 , pp. 16971-16976
    • Shashidharan, P.1    Michaelidis, T.M.2    Robakis, N.K.3    Kresovali, A.4    Papamatheakis, J.5
  • 24
    • 0004235430 scopus 로고    scopus 로고
    • New York: J. Wiley and Sons. 364 p
    • Scheffler IE (2007) Mitochondria. New York: J. Wiley and Sons. 364 p.
    • (2007) Mitochondria
    • Scheffler, I.E.1
  • 25
    • 0030468155 scopus 로고    scopus 로고
    • Mitochondrial distribution and inheritance
    • Berger KH, Yaffe MP (1996) Mitochondrial distribution and inheritance. Experientia 52: 1111-1116.
    • (1996) Experientia , vol.52 , pp. 1111-1116
    • Berger, K.H.1    Yaffe, M.P.2
  • 26
    • 45549083763 scopus 로고    scopus 로고
    • Functional diversification of duplicate genes through subcellular adaptation of encoded proteins
    • Marques AC, Vinckenbosh N, Brawand D, Kaessmann H (2008) Functional diversification of duplicate genes through subcellular adaptation of encoded proteins. Genome Biol 9: R54.
    • (2008) Genome Biol , vol.9
    • Marques, A.C.1    Vinckenbosh, N.2    Brawand, D.3    Kaessmann, H.4
  • 27
    • 45849119853 scopus 로고    scopus 로고
    • Birth and Rapid Subcellular Adaptation of a Hominoid-Specific CDC14 Protein
    • Rosso L, Marques AC, Weier M, Lambert N, Lambot M-A, et al. (2008) Birth and Rapid Subcellular Adaptation of a Hominoid-Specific CDC14 Protein. PLoS Biol 6: e140.
    • (2008) PLoS Biol , vol.6
    • Rosso, L.1    Marques, A.C.2    Weier, M.3    Lambert, N.4    Lambot, M.-A.5
  • 28
    • 0041884765 scopus 로고    scopus 로고
    • Retention of a duplicate gene through changes in subcellular targeting: An electron transport protein homologue localizes to the golgi
    • Schmidt TR, Doan JW, Goodman M, Grossman LI (2003) Retention of a duplicate gene through changes in subcellular targeting: an electron transport protein homologue localizes to the golgi. J Mol Evol 57: 222-228.
    • (2003) J Mol Evol , vol.57 , pp. 222-228
    • Schmidt, T.R.1    Doan, J.W.2    Goodman, M.3    Grossman, L.I.4
  • 29
    • 17744371839 scopus 로고    scopus 로고
    • The tripartite motif family identifies cell compartments
    • Reymond A, Meroni G, Fantozzi A, Merla G, Cairo S, et al. (2001) The tripartite motif family identifies cell compartments. Embo J 20: 2140-2151.
    • (2001) Embo J , vol.20 , pp. 2140-2151
    • Reymond, A.1    Meroni, G.2    Fantozzi, A.3    Merla, G.4    Cairo, S.5
  • 30
    • 45549083763 scopus 로고    scopus 로고
    • Functional diversification of duplicate genes through subcellular adaptation of encoded proteins
    • Marques AC, Vinckenbosch N, Brawand D, Kaessmann H (2008) Functional diversification of duplicate genes through subcellular adaptation of encoded proteins. Genome Biol 9: R54.
    • (2008) Genome Biol , vol.9
    • Marques, A.C.1    Vinckenbosch, N.2    Brawand, D.3    Kaessmann, H.4
  • 31
    • 45849119853 scopus 로고    scopus 로고
    • Birth and Rapid Subcellular Adaptation of a Hominoid-Specific CDC14 Protein
    • in press
    • Rosso L, Marques AC, Weier M, Lambert N, Lambot M-A, et al. (2008) Birth and Rapid Subcellular Adaptation of a Hominoid-Specific CDC14 Protein. PLoS Biology (in press).
    • (2008) PLoS Biology
    • Rosso, L.1    Marques, A.C.2    Weier, M.3    Lambert, N.4    Lambot, M.-A.5
  • 32
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang Z (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 13: 555-556.
    • (1997) Comput Appl Biosci , vol.13 , pp. 555-556
    • Yang, Z.1
  • 33
    • 0031897964 scopus 로고    scopus 로고
    • Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
    • Yang Z (1998) Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution. Mol Biol Evol 15: 568-573.
    • (1998) Mol Biol Evol , vol.15 , pp. 568-573
    • Yang, Z.1
  • 34
    • 27844439855 scopus 로고    scopus 로고
    • Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
    • Zhang J, Nielsen R, Yang Z (2005) Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol 22: 2472-2479.
    • (2005) Mol Biol Evol , vol.22 , pp. 2472-2479
    • Zhang, J.1    Nielsen, R.2    Yang, Z.3
  • 35
    • 16344378246 scopus 로고    scopus 로고
    • Bayes empirical bayes inference of amino acid sites under positive selection
    • Yang Z, Wong WS, Nielsen R (2005) Bayes empirical bayes inference of amino acid sites under positive selection. Mol Biol Evol 22: 1107-1118.
    • (2005) Mol Biol Evol , vol.22 , pp. 1107-1118
    • Yang, Z.1    Wong, W.S.2    Nielsen, R.3
  • 36
    • 0033360816 scopus 로고    scopus 로고
    • The genomic record of Humankind's evolutionary roots
    • Goodman M (1999) The genomic record of Humankind's evolutionary roots. Am J Hum Genet 64: 31-39.
    • (1999) Am J Hum Genet , vol.64 , pp. 31-39
    • Goodman, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.