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Volumn 391, Issue 1, 2010, Pages 33-37

Delineating role of ubiquitination on nuclear factor-kappa B pathway by a computational modeling approach

Author keywords

Cell signaling; Computational modeling; NF B; Post translational modification; Ubiquitin

Indexed keywords

I KAPPA B KINASE; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; PROTEASOME; UBIQUITIN;

EID: 72949102216     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2009.10.155     Document Type: Article
Times cited : (5)

References (31)
  • 1
    • 33645312379 scopus 로고    scopus 로고
    • Circuitry of nuclear factor kappaB signaling
    • Hoffmann A., and Baltimore D. Circuitry of nuclear factor kappaB signaling. Immunol. Rev. 210 (2006) 171-186
    • (2006) Immunol. Rev. , vol.210 , pp. 171-186
    • Hoffmann, A.1    Baltimore, D.2
  • 2
    • 0034084163 scopus 로고    scopus 로고
    • Phosphorylation meets ubiquitination: the control of NF-[kappa]B activity
    • Karin M., and Ben-Neriah Y. Phosphorylation meets ubiquitination: the control of NF-[kappa]B activity. Annu. Rev. Immunol. 18 (2000) 621-663
    • (2000) Annu. Rev. Immunol. , vol.18 , pp. 621-663
    • Karin, M.1    Ben-Neriah, Y.2
  • 3
    • 17644383370 scopus 로고    scopus 로고
    • A pervasive role of ubiquitin conjugation in activation and termination of IkappaB kinase pathways
    • Krappmann D., and Scheidereit C. A pervasive role of ubiquitin conjugation in activation and termination of IkappaB kinase pathways. EMBO Rep. 6 (2005) 321-326
    • (2005) EMBO Rep. , vol.6 , pp. 321-326
    • Krappmann, D.1    Scheidereit, C.2
  • 5
    • 23144449789 scopus 로고    scopus 로고
    • Ubiquitin signalling in the NF-kappaB pathway
    • Chen Z.J. Ubiquitin signalling in the NF-kappaB pathway. Nat. Cell Biol. 7 (2005) 758-765
    • (2005) Nat. Cell Biol. , vol.7 , pp. 758-765
    • Chen, Z.J.1
  • 6
    • 33645703930 scopus 로고    scopus 로고
    • Sensing of Lys 63-linked polyubiquitination by NEMO is a key event in NF-kappaB activation [corrected]
    • Wu C.J., Conze D.B., Li T., Srinivasula S.M., and Ashwell J.D. Sensing of Lys 63-linked polyubiquitination by NEMO is a key event in NF-kappaB activation [corrected]. Nat. Cell Biol. 8 (2006) 398-406
    • (2006) Nat. Cell Biol. , vol.8 , pp. 398-406
    • Wu, C.J.1    Conze, D.B.2    Li, T.3    Srinivasula, S.M.4    Ashwell, J.D.5
  • 7
    • 33646034316 scopus 로고    scopus 로고
    • Activation of IKK by TNFalpha requires site-specific ubiquitination of RIP1 and polyubiquitin binding by NEMO
    • Ea C.K., Deng L., Xia Z.P., Pineda G., and Chen Z.J. Activation of IKK by TNFalpha requires site-specific ubiquitination of RIP1 and polyubiquitin binding by NEMO. Mol. Cell 22 (2006) 245-257
    • (2006) Mol. Cell , vol.22 , pp. 245-257
    • Ea, C.K.1    Deng, L.2    Xia, Z.P.3    Pineda, G.4    Chen, Z.J.5
  • 10
    • 9744222883 scopus 로고    scopus 로고
    • Protein quality control in Alzheimer's disease by the ubiquitin proteasome system
    • de Vrij F.M., Fischer D.F., van Leeuwen F.W., and Hol E.M. Protein quality control in Alzheimer's disease by the ubiquitin proteasome system. Prog. Neurobiol. 74 (2004) 249-270
    • (2004) Prog. Neurobiol. , vol.74 , pp. 249-270
    • de Vrij, F.M.1    Fischer, D.F.2    van Leeuwen, F.W.3    Hol, E.M.4
  • 11
    • 27844548672 scopus 로고    scopus 로고
    • The proteasome in Alzheimer's disease and Parkinson's disease: lessons from ubiquitin B+1
    • Hol E.M., van Leeuwen F.W., and Fischer D.F. The proteasome in Alzheimer's disease and Parkinson's disease: lessons from ubiquitin B+1. Trends Mol. Med. 11 (2005) 488-495
    • (2005) Trends Mol. Med. , vol.11 , pp. 488-495
    • Hol, E.M.1    van Leeuwen, F.W.2    Fischer, D.F.3
  • 12
    • 7244260495 scopus 로고    scopus 로고
    • Alzheimer's disease meets the ubiquitin-proteasome system
    • Song S., and Jung Y.K. Alzheimer's disease meets the ubiquitin-proteasome system. Trends Mol. Med. 10 (2004) 565-570
    • (2004) Trends Mol. Med. , vol.10 , pp. 565-570
    • Song, S.1    Jung, Y.K.2
  • 13
    • 33845424529 scopus 로고    scopus 로고
    • A rate equation approach to elucidate the kinetics and robustness of the TGF-beta pathway
    • Melke P., Jonsson H., Pardali E., ten Dijke P., and Peterson C. A rate equation approach to elucidate the kinetics and robustness of the TGF-beta pathway. Biophys. J. 91 (2006) 4368-4380
    • (2006) Biophys. J. , vol.91 , pp. 4368-4380
    • Melke, P.1    Jonsson, H.2    Pardali, E.3    ten Dijke, P.4    Peterson, C.5
  • 14
    • 33746605149 scopus 로고    scopus 로고
    • Minimal model of spiky oscillations in NF-kappaB signaling
    • Krishna S., Jensen M.H., and Sneppen K. Minimal model of spiky oscillations in NF-kappaB signaling. Proc. Natl. Acad. Sci. USA 103 (2006) 10840-10845
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 10840-10845
    • Krishna, S.1    Jensen, M.H.2    Sneppen, K.3
  • 15
    • 0035444539 scopus 로고    scopus 로고
    • Signal transduction by tumor necrosis factor and its relatives
    • Baud V., and Karin M. Signal transduction by tumor necrosis factor and its relatives. Trends Cell Biol. 11 (2001) 372-377
    • (2001) Trends Cell Biol. , vol.11 , pp. 372-377
    • Baud, V.1    Karin, M.2
  • 16
    • 10044298518 scopus 로고    scopus 로고
    • Restoration of NF-kappaB activation by tumor necrosis factor alpha receptor complex-targeted MEKK3 in receptor-interacting protein-deficient cells
    • Blonska M., You Y., Geleziunas R., and Lin X. Restoration of NF-kappaB activation by tumor necrosis factor alpha receptor complex-targeted MEKK3 in receptor-interacting protein-deficient cells. Mol. Cell. Biol. 24 (2004) 10757-10765
    • (2004) Mol. Cell. Biol. , vol.24 , pp. 10757-10765
    • Blonska, M.1    You, Y.2    Geleziunas, R.3    Lin, X.4
  • 19
    • 0023009780 scopus 로고
    • A high molecular weight protease in the cytosol of rat liver. I. Purification, enzymological properties, and tissue distribution
    • Tanaka K., Ii K., Ichihara A., Waxman L., and Goldberg A.L. A high molecular weight protease in the cytosol of rat liver. I. Purification, enzymological properties, and tissue distribution. J. Biol. Chem. 261 (1986) 15197-15203
    • (1986) J. Biol. Chem. , vol.261 , pp. 15197-15203
    • Tanaka, K.1    Ii, K.2    Ichihara, A.3    Waxman, L.4    Goldberg, A.L.5
  • 20
    • 0036143575 scopus 로고    scopus 로고
    • Tumor necrosis factor-related apoptosis-inducing ligand induces caspase-dependent interleukin-8 expression and apoptosis in human astroglioma cells
    • Choi C., Kutsch O., Park J., Zhou T., Seol D.W., and Benveniste E.N. Tumor necrosis factor-related apoptosis-inducing ligand induces caspase-dependent interleukin-8 expression and apoptosis in human astroglioma cells. Mol. Cell. Biol. 22 (2002) 724-736
    • (2002) Mol. Cell. Biol. , vol.22 , pp. 724-736
    • Choi, C.1    Kutsch, O.2    Park, J.3    Zhou, T.4    Seol, D.W.5    Benveniste, E.N.6
  • 21
    • 0344258462 scopus 로고    scopus 로고
    • Fas ligand and Fas are expressed constitutively in human astrocytes and the expression increases with IL-1, IL-6, TNF-alpha, or IFN-gamma
    • Choi C., Park J.Y., Lee J., Lim J.H., Shin E.C., Ahn Y.S., Kim C.H., Kim S.J., Kim J.D., Choi I.S., and Choi I.H. Fas ligand and Fas are expressed constitutively in human astrocytes and the expression increases with IL-1, IL-6, TNF-alpha, or IFN-gamma. J. Immunol. 162 (1999) 1889-1895
    • (1999) J. Immunol. , vol.162 , pp. 1889-1895
    • Choi, C.1    Park, J.Y.2    Lee, J.3    Lim, J.H.4    Shin, E.C.5    Ahn, Y.S.6    Kim, C.H.7    Kim, S.J.8    Kim, J.D.9    Choi, I.S.10    Choi, I.H.11
  • 22
    • 0033712615 scopus 로고    scopus 로고
    • Recruitment of the IKK signalosome to the p55 TNF receptor: RIP and A20 bind to NEMO (IKKgamma) upon receptor stimulation
    • Zhang S.Q., Kovalenko A., Cantarella G., and Wallach D. Recruitment of the IKK signalosome to the p55 TNF receptor: RIP and A20 bind to NEMO (IKKgamma) upon receptor stimulation. Immunity 12 (2000) 301-311
    • (2000) Immunity , vol.12 , pp. 301-311
    • Zhang, S.Q.1    Kovalenko, A.2    Cantarella, G.3    Wallach, D.4
  • 23
    • 33749340654 scopus 로고    scopus 로고
    • Parameter estimation in biochemical systems models with alternating regression
    • Chou I.C., Martens H., and Voit E.O. Parameter estimation in biochemical systems models with alternating regression. Theor. Biol. Med. Model 3 (2006) 25
    • (2006) Theor. Biol. Med. Model , vol.3 , pp. 25
    • Chou, I.C.1    Martens, H.2    Voit, E.O.3
  • 24
    • 0242574982 scopus 로고    scopus 로고
    • Parameter estimation in biochemical pathways: a comparison of global optimization methods
    • Moles C.G., Mendes P., and Banga J.R. Parameter estimation in biochemical pathways: a comparison of global optimization methods. Genome. Res. 13 (2003) 2467-2474
    • (2003) Genome. Res. , vol.13 , pp. 2467-2474
    • Moles, C.G.1    Mendes, P.2    Banga, J.R.3
  • 25
    • 32044474451 scopus 로고    scopus 로고
    • A hybrid approach for efficient and robust parameter estimation in biochemical pathways
    • Rodriguez-Fernandez M., Mendes P., and Banga J.R. A hybrid approach for efficient and robust parameter estimation in biochemical pathways. Biosystems 83 (2006) 248-265
    • (2006) Biosystems , vol.83 , pp. 248-265
    • Rodriguez-Fernandez, M.1    Mendes, P.2    Banga, J.R.3
  • 26
    • 13844296861 scopus 로고    scopus 로고
    • In silico identification of the key components and steps in IFN-gamma induced JAK-STAT signaling pathway
    • Zi Z., Cho K.H., Sung M.H., Xia X., Zheng J., and Sun Z. In silico identification of the key components and steps in IFN-gamma induced JAK-STAT signaling pathway. FEBS. Lett. 579 (2005) 1101-1108
    • (2005) FEBS. Lett. , vol.579 , pp. 1101-1108
    • Zi, Z.1    Cho, K.H.2    Sung, M.H.3    Xia, X.4    Zheng, J.5    Sun, Z.6
  • 27
    • 34548674948 scopus 로고    scopus 로고
    • Divergent effect of proteasome inhibition on interleukin-1beta and tumor necrosis factor alpha signaling in human astroglial cells
    • Choi K., Lee J., and Choi C. Divergent effect of proteasome inhibition on interleukin-1beta and tumor necrosis factor alpha signaling in human astroglial cells. FEBS. Lett. 581 (2007) 4691-4696
    • (2007) FEBS. Lett. , vol.581 , pp. 4691-4696
    • Choi, K.1    Lee, J.2    Choi, C.3
  • 29
    • 0033913111 scopus 로고    scopus 로고
    • Molecular misreading. A new type of transcript mutation in gerontology
    • van Leeuwen F.W., Fischer D.F., Benne R., and Hol E.M. Molecular misreading. A new type of transcript mutation in gerontology. Ann. NY Acad. Sci. 908 (2000) 267-281
    • (2000) Ann. NY Acad. Sci. , vol.908 , pp. 267-281
    • van Leeuwen, F.W.1    Fischer, D.F.2    Benne, R.3    Hol, E.M.4
  • 30
    • 4644328932 scopus 로고    scopus 로고
    • Mutant ubiquitin UBB+1 is accumulated in sporadic inclusion-body myositis muscle fibers
    • Fratta P., Engel W.K., Van Leeuwen F.W., Hol E.M., Vattemi G., and Askanas V. Mutant ubiquitin UBB+1 is accumulated in sporadic inclusion-body myositis muscle fibers. Neurology 63 (2004) 1114-1117
    • (2004) Neurology , vol.63 , pp. 1114-1117
    • Fratta, P.1    Engel, W.K.2    Van Leeuwen, F.W.3    Hol, E.M.4    Vattemi, G.5    Askanas, V.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.