-
1
-
-
0030801002
-
Grapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W. Lipman, D.J. (1997) Grapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389 3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0030893297
-
The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these genera
-
Anzai, Y., Kudo, Y. Oyaizu, H. (1997) The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these genera. Int J Syst Bacteriol 47, 249 251.
-
(1997)
Int J Syst Bacteriol
, vol.47
, pp. 249-251
-
-
Anzai, Y.1
Kudo, Y.2
Oyaizu, H.3
-
3
-
-
0019513663
-
Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli
-
Brosius, J., Dull, T.J., Sleeter, D.D. Noller, H.F. (1981) Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli. J Mol Biol 148, 107 127.
-
(1981)
J Mol Biol
, vol.148
, pp. 107-127
-
-
Brosius, J.1
Dull, T.J.2
Sleeter, D.D.3
Noller, H.F.4
-
4
-
-
0842304289
-
Bacteria-induced intestinal cancer in mice with disrupted Gpx1 and Gpx2 genes
-
Chu, F.F., Esworthy, R.S., Chu, P.G., Longmate, J.A., Huycke, M.M., Wilczynski, S. Doroshow, J.H. (2004) Bacteria-induced intestinal cancer in mice with disrupted Gpx1 and Gpx2 genes. Cancer Res 64, 962 968.
-
(2004)
Cancer Res
, vol.64
, pp. 962-968
-
-
Chu, F.F.1
Esworthy, R.S.2
Chu, P.G.3
Longmate, J.A.4
Huycke, M.M.5
Wilczynski, S.6
Doroshow, J.H.7
-
5
-
-
0028126829
-
The phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations
-
Collins, M.D., Lawson, P.A., Willems, A., Cordoba, J.J., Fernandez-Garayzabal, J., Garcia, P., Cai, J., Hippe, H. et al. (1994) The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations. Int J Syst Bacteriol 44, 812 826.
-
(1994)
Int J Syst Bacteriol
, vol.44
, pp. 812-826
-
-
Collins, M.D.1
Lawson, P.A.2
Willems, A.3
Cordoba, J.J.4
Fernandez-Garayzabal, J.5
Garcia, P.6
Cai, J.7
Hippe, H.8
-
6
-
-
0032803862
-
Phylogeny of the defined murine microbiota: Altered Schaedler flora
-
Dewhirst, F.E., Chien, C.C., Paster, B.J., Ericson, R.L., Orcutt, R.P., Schauer, D.B. Fox, J.G. (1999) Phylogeny of the defined murine microbiota: altered Schaedler flora. Appl Environ Microbiol 65, 3287 3292.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3287-3292
-
-
Dewhirst, F.E.1
Chien, C.C.2
Paster, B.J.3
Ericson, R.L.4
Orcutt, R.P.5
Schauer, D.B.6
Fox, J.G.7
-
7
-
-
20444422471
-
Host distributions of uncultivated fecal Bacteroides bacteria reveal genetic markers for fecal source identification
-
Dick, L.K., Bernhard, A.E., Brodeur, T.J., Santo Domingo, J.W., Simpson, J.M., Walters, S.P. Field, K.G. (2005) Host distributions of uncultivated fecal Bacteroides bacteria reveal genetic markers for fecal source identification. Appl Environ Microbiol 71, 3184 3191.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 3184-3191
-
-
Dick, L.K.1
Bernhard, A.E.2
Brodeur, T.J.3
Santo Domingo, J.W.4
Simpson, J.M.5
Walters, S.P.6
Field, K.G.7
-
8
-
-
0027248058
-
A modified alkaline lysis method for the preparation of highly purified plasmid DNA from Escherichia coli
-
Feliciello, I. Chinali, G. (1993) A modified alkaline lysis method for the preparation of highly purified plasmid DNA from Escherichia coli. Anal Biochem 212, 394 401.
-
(1993)
Anal Biochem
, vol.212
, pp. 394-401
-
-
Feliciello, I.1
Chinali, G.2
-
9
-
-
0031692488
-
Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes
-
Franks, A.H., Harmsen, H.J.M., Raangs, G.C., Jansen, G.J., Schut, F. Welling, G.W. (1998) Variations of bacterial populations in human feces measured by fluorescent in situ hybridization with group-specific 16S rRNA-targeted oligonucleotide probes. Appl Environ Microbiol 64, 3336 3345.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 3336-3345
-
-
Franks, A.H.1
Harmsen, H.J.M.2
Raangs, G.C.3
Jansen, G.J.4
Schut, F.5
Welling, G.W.6
-
10
-
-
0025778965
-
Rapid 16S ribosomal DNA sequencing from a single colony without DNA extraction or purification
-
Frothingham, R., Allen, R.L. Wilson, K.H. (1991) Rapid 16S ribosomal DNA sequencing from a single colony without DNA extraction or purification. BioTechniques 11, 40 44.
-
(1991)
BioTechniques
, vol.11
, pp. 40-44
-
-
Frothingham, R.1
Allen, R.L.2
Wilson, K.H.3
-
11
-
-
0016767839
-
Membrane-bound DNA from Escherichia coli: Extraction freeze-thaw-lysozome
-
Grossman, N. Ron, E. (1975) Membrane-bound DNA from Escherichia coli: extraction freeze-thaw-lysozome. FEBS Lett 54, 327 329.
-
(1975)
FEBS Lett
, vol.54
, pp. 327-329
-
-
Grossman, N.1
Ron, E.2
-
12
-
-
0019268534
-
Production of gnotobiotic mice with normal physiological functions. I. Section of useful bacteria from feces of conventional mice
-
Itoh, K. Mitsuoka, T. (1980) Production of gnotobiotic mice with normal physiological functions. I. Section of useful bacteria from feces of conventional mice. Z Versuchstierk 22, 173 178.
-
(1980)
Z Versuchstierk
, vol.22
, pp. 173-178
-
-
Itoh, K.1
Mitsuoka, T.2
-
13
-
-
0021923837
-
Characterization of clostridia isolated from faeces of limited flora mice and their effect on caecal size when associated with germ-free mice
-
Itoh, K. Mitsuoka, T. (1985) Characterization of clostridia isolated from faeces of limited flora mice and their effect on caecal size when associated with germ-free mice. Lab Anim 19, 111 118.
-
(1985)
Lab Anim
, vol.19
, pp. 111-118
-
-
Itoh, K.1
Mitsuoka, T.2
-
14
-
-
18244392212
-
Intestinal flora of animal models of human diseases as an environmental factor
-
Itoh, K. Narushima, S. (2005) Intestinal flora of animal models of human diseases as an environmental factor. Curr Issues Intest Microbiol 6, 9 16.
-
(2005)
Curr Issues Intest Microbiol
, vol.6
, pp. 9-16
-
-
Itoh, K.1
Narushima, S.2
-
15
-
-
0022633366
-
Colonization resistance against Pseudomonas aeruginosa in gnotobiotic mice
-
Itoh, K., Urano, T. Mitsuoka, T. (1986) Colonization resistance against Pseudomonas aeruginosa in gnotobiotic mice. Lab Anim 20, 197 201.
-
(1986)
Lab Anim
, vol.20
, pp. 197-201
-
-
Itoh, K.1
Urano, T.2
Mitsuoka, T.3
-
16
-
-
0023156767
-
Intestinal bacteria antagonistic to Clostridium difficile in mice
-
Itoh, K., Lee, W.K., Kawamura, H., Mitsuoka, T. Magaribuchi, T. (1987) Intestinal bacteria antagonistic to Clostridium difficile in mice. Lab Anim 21, 20 25.
-
(1987)
Lab Anim
, vol.21
, pp. 20-25
-
-
Itoh, K.1
Lee, W.K.2
Kawamura, H.3
Mitsuoka, T.4
Magaribuchi, T.5
-
17
-
-
2442675506
-
Maturation of the murine cecal microbiota as revealed by terminal restriction fragment length polymorphism and 16S rRNA gene clone libraries
-
Kibe, R., Sakamoto, M., Hayashi, H., Yokota, H. Benno, Y. (2004) Maturation of the murine cecal microbiota as revealed by terminal restriction fragment length polymorphism and 16S rRNA gene clone libraries. FEMS Microbiol Lett 235, 139 146.
-
(2004)
FEMS Microbiol Lett
, vol.235
, pp. 139-146
-
-
Kibe, R.1
Sakamoto, M.2
Hayashi, H.3
Yokota, H.4
Benno, Y.5
-
18
-
-
0014414350
-
Enumeration of the oxygen sensitive bacteria usually present in the intestine of healthy mice
-
Lee, A., Gordon, J. Dubos, R. (1968) Enumeration of the oxygen sensitive bacteria usually present in the intestine of healthy mice. Nature 220, 1137 1139.
-
(1968)
Nature
, vol.220
, pp. 1137-1139
-
-
Lee, A.1
Gordon, J.2
Dubos, R.3
-
19
-
-
0028158541
-
PCR-based random amplified polymorphic DNA fingerprinting of Yersinia pseudotuberculosis and its practical applications
-
Makino, S., Okada, Y., Maruyama, T., Kaneko, S. Sasakawa, C. (1994) PCR-based random amplified polymorphic DNA fingerprinting of Yersinia pseudotuberculosis and its practical applications. J Clin Microbiol 32, 65 69.
-
(1994)
J Clin Microbiol
, vol.32
, pp. 65-69
-
-
Makino, S.1
Okada, Y.2
Maruyama, T.3
Kaneko, S.4
Sasakawa, C.5
-
20
-
-
10444226583
-
Use of 16S rRNA gene-targeted group-specific primers for real-time PCR analysis of predominant bacteria in human feces
-
Matsuki, T., Watanabe, K., Fujimoto, J., Takada, T. Tanaka, R. (2004) Use of 16S rRNA gene-targeted group-specific primers for real-time PCR analysis of predominant bacteria in human feces. Appl Environ Microbiol 70, 7220 7228.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 7220-7228
-
-
Matsuki, T.1
Watanabe, K.2
Fujimoto, J.3
Takada, T.4
Tanaka, R.5
-
21
-
-
0013777656
-
Eine verbesserte Methodik der qualitativen und quantitativen Analyse der Darmflora von Menschen und Tieren
-
Mitsuoka, T., Sega, T. Yamamoto, S. (1965) Eine verbesserte Methodik der qualitativen und quantitativen Analyse der Darmflora von Menschen und Tieren. Z Bakteriol Parasitenkd Infektionskr Hyg I Orig 195, 455 469.
-
(1965)
Z Bakteriol Parasitenkd Infektionskr Hyg i Orig
, vol.195
, pp. 455-469
-
-
Mitsuoka, T.1
Sega, T.2
Yamamoto, S.3
-
22
-
-
0032042772
-
Effect of mouse intestinal bacteria on incidence of colorectal tumors induced by 1,2-dimethylhydrazine injection in gnotobiotic transgenic mice harboring human prototype c-Ha-ras genes
-
Narushima, S., Itoh, K., Mitsuoka, T., Nakayama, H., Itoh, T., Hioki, K. Nomura, T. (1998) Effect of mouse intestinal bacteria on incidence of colorectal tumors induced by 1,2-dimethylhydrazine injection in gnotobiotic transgenic mice harboring human prototype c-Ha-ras genes. Exp Anim 47, 111 117.
-
(1998)
Exp Anim
, vol.47
, pp. 111-117
-
-
Narushima, S.1
Itoh, K.2
Mitsuoka, T.3
Nakayama, H.4
Itoh, T.5
Hioki, K.6
Nomura, T.7
-
23
-
-
19044369245
-
Effect of the intestinal flora on amyloid deposition in a transgenic mouse model of familial amyloidotic polyneuropathy
-
Noguchi, H., Ohta, M., Wakasugi, S., Noguchi, K., Nakamura, N., Nakamura, O., Miyakawa, K., Takeya, M. et al. (2002) Effect of the intestinal flora on amyloid deposition in a transgenic mouse model of familial amyloidotic polyneuropathy. Exp Anim 51, 309 316.
-
(2002)
Exp Anim
, vol.51
, pp. 309-316
-
-
Noguchi, H.1
Ohta, M.2
Wakasugi, S.3
Noguchi, K.4
Nakamura, N.5
Nakamura, O.6
Miyakawa, K.7
Takeya, M.8
-
24
-
-
21244486272
-
Species-specific oligonucleotide probes for the detection and identification of Lactobacillus isolated from mouse faeces
-
Park, S.H. Itoh, K. (2005) Species-specific oligonucleotide probes for the detection and identification of Lactobacillus isolated from mouse faeces. J Appl Microbiol 99, 51 57.
-
(2005)
J Appl Microbiol
, vol.99
, pp. 51-57
-
-
Park, S.H.1
Itoh, K.2
-
25
-
-
0002993495
-
Anaerobiosis with iron wool
-
Parker, C.A. (1955) Anaerobiosis with iron wool. Aust J Exp Biol Med Sci 33, 33 38.
-
(1955)
Aust J Exp Biol Med Sci
, vol.33
, pp. 33-38
-
-
Parker, C.A.1
-
27
-
-
0036854372
-
Analysis of 16S libraries of mouse gastrointestinal microflora reveals a large new group of mouse intestinal bacteria
-
Salzman, N.H., de Jong, H., Paterson, Y., Harmsen, H.J.M., Welling, G.W. Bos, N.A. (2002) Analysis of 16S libraries of mouse gastrointestinal microflora reveals a large new group of mouse intestinal bacteria. Microbiology 148, 3651 3660.
-
(2002)
Microbiology
, vol.148
, pp. 3651-3660
-
-
Salzman, N.H.1
De Jong, H.2
Paterson, Y.3
Harmsen, H.J.M.4
Welling, G.W.5
Bos, N.A.6
-
28
-
-
32944459814
-
Abundant and diverse fungal microbiota in the murine intestine
-
Scupham, A.J., Presley, L.L., Wei, B., Bent, E., Griffith, N., McPherson, M., Zhu, F., Oluwadara, O. et al. (2006) Abundant and diverse fungal microbiota in the murine intestine. Appl Environ Microbiol 72, 793 801.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 793-801
-
-
Scupham, A.J.1
Presley, L.L.2
Wei, B.3
Bent, E.4
Griffith, N.5
McPherson, M.6
Zhu, F.7
Oluwadara, O.8
-
29
-
-
0032412057
-
Resident enteric bacteria are necessary for development of spontaneous colitis and immune system activation in interleukin-10-deficient mice
-
Sellon, R.K., Tonkonogy, S., Schultz, M., Dieleman, L.A., Grenther, W., Balish, E., Rennick, D.M. Sartor, R.B. (1998) Resident enteric bacteria are necessary for development of spontaneous colitis and immune system activation in interleukin-10-deficient mice. Infect Immun 66, 5224 5231.
-
(1998)
Infect Immun
, vol.66
, pp. 5224-5231
-
-
Sellon, R.K.1
Tonkonogy, S.2
Schultz, M.3
Dieleman, L.A.4
Grenther, W.5
Balish, E.6
Rennick, D.M.7
Sartor, R.B.8
-
30
-
-
0028028182
-
Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
-
Stackebrandt, E. Goebel, B.M. (1994) Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846 849.
-
(1994)
Int J Syst Bacteriol
, vol.44
, pp. 846-849
-
-
Stackebrandt, E.1
Goebel, B.M.2
-
31
-
-
14844351844
-
Spatial organization of bacterial flora in normal and inflamed intestine: A fluorescence in situ hybridization study in mice
-
Swidsinski, A., Loening-Baucke, V., Lochs, H. Hale, L.P. (2007) Spatial organization of bacterial flora in normal and inflamed intestine: a fluorescence in situ hybridization study in mice. World J Gastroenterol 11, 1131 1140.
-
(2007)
World J Gastroenterol
, vol.11
, pp. 1131-1140
-
-
Swidsinski, A.1
Loening-Baucke, V.2
Lochs, H.3
Hale, L.P.4
-
32
-
-
34547781750
-
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
-
Tamura, K., Dudley, J., Nei, M. Kumar, S. (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596 1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
33
-
-
0031574072
-
CLUSTAL-X windows interface: Flexible strategies of multiple sequence alignment aided by quality analysis tools
-
Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. Higgins, D.G. (1997) CLUSTAL-X windows interface: flexible strategies of multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876 4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
34
-
-
0026067797
-
16S ribosomal DNA amplification for phylogenetic study
-
Weisburg, W.A., Barns, S.M., Pelletier, D.A. Lane, D.J. (1991) 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697 703.
-
(1991)
J Bacteriol
, vol.173
, pp. 697-703
-
-
Weisburg, W.A.1
Barns, S.M.2
Pelletier, D.A.3
Lane, D.J.4
|