-
1
-
-
0032573579
-
Zebrafish box clusters and vertebrate genome evolution
-
Amores A, Force A, Yan YL, Joly L, Amemiya C, Fritz A, Ho RK, Langeland J, Prince V, Wang YL, Westerfield M, Ekker M, Postlethwait JH. 1998. Zebrafish box clusters and vertebrate genome evolution. Science 282:1711-1714.
-
(1998)
Science
, vol.282
, pp. 1711-1714
-
-
Amores, A.1
Force, A.2
Yan, Y.L.3
Joly, L.4
Amemiya, C.5
Fritz, A.6
Ho, R.K.7
Langeland, J.8
Prince, V.9
Wang, Y.L.10
Westerfield, M.11
Ekker, M.12
Postlethwait, J.H.13
-
2
-
-
0346734128
-
Divergence of Hoxc8 early enhancer parallels diverged axial morphologies between mammals and fishes
-
Anand S, Wang WC, Powell DR, Bolanowski SA, Zhang J, Ledje C, Pawashe AB, Amemiya CT, Shashikant CS. 2003. Divergence of Hoxc8 early enhancer parallels diverged axial morphologies between mammals and fishes. Proc Natl Acad Sci USA 100:15666-15669.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 15666-15669
-
-
Anand, S.1
Wang, W.C.2
Powell, D.R.3
Bolanowski, S.A.4
Zhang, J.5
Ledje, C.6
Pawashe, A.B.7
Amemiya, C.T.8
Shashikant, C.S.9
-
3
-
-
0028962333
-
Detecting conserved regulatory elements with the model genome of the Japanese puffer fish, Fugu rubripes
-
Aparicio S, Morrison A, Gould A, Gilthorpe J, Chaudhuri C, Rigby P, Krumlauf R, Brenner S. 1995. Detecting conserved regulatory elements with the model genome of the Japanese puffer fish, Fugu rubripes. Proc Natl Acad Sci USA 92:1684-1688.
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 1684-1688
-
-
Aparicio, S.1
Morrison, A.2
Gould, A.3
Gilthorpe, J.4
Chaudhuri, C.5
Rigby, P.6
Krumlauf, R.7
Brenner, S.8
-
4
-
-
0034691196
-
Isolation and characterization of BEN, a member of the TFII-I family of DNA-binding proteins containing distinct helix-loop-helix domains
-
Bayarsaihan D, Ruddle FH. 2000. Isolation and characterization of BEN, a member of the TFII-I family of DNA-binding proteins containing distinct helix-loop-helix domains. Proc Natl Acad Sci USA 97:7342-7347.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 7342-7347
-
-
Bayarsaihan, D.1
Ruddle, F.H.2
-
5
-
-
0030044927
-
Conserved regulatory element involved in the early onset of Hoxb6 gene expression
-
Becker D, Jiang Z, Knodler P, Deinard AS, Eid R, Kidd KK, Shashikant CS, Ruddle FH, Schughart K. 1996. Conserved regulatory element involved in the early onset of Hoxb6 gene expression. Dev Dyn 205:73-81.
-
(1996)
Dev Dyn
, vol.205
, pp. 73-81
-
-
Becker, D.1
Jiang, Z.2
Knodler, P.3
Deinard, A.S.4
Eid, R.5
Kidd, K.K.6
Shashikant, C.S.7
Ruddle, F.H.8
Schughart, K.9
-
6
-
-
3543019636
-
Multiple phases of expression and regulation of mouse Hoxc8 during early embryogenesis
-
Belting HG, Shashikant CS, Ruddle FH. 1998a. Multiple phases of expression and regulation of mouse Hoxc8 during early embryogenesis. J Exp Zool 282:196-222.
-
(1998)
J Exp Zool
, vol.282
, pp. 196-222
-
-
Belting, H.G.1
Shashikant, C.S.2
Ruddle, F.H.3
-
7
-
-
0032478086
-
Modification of expression and deregulation of Hoxc8 in the evolution of diverged axial morphology
-
Belting HG, Shashikant CS, Ruddle FH. 1998b. Modification of expression and deregulation of Hoxc8 in the evolution of diverged axial morphology. Proc Natl Acad Sci USA 95:2355-2360.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 2355-2360
-
-
Belting, H.G.1
Shashikant, C.S.2
Ruddle, F.H.3
-
8
-
-
0029911791
-
A longrange regulatory element of Hoxc8 identified by using the pClasper vector
-
Bradshaw MS, Shashikant CS, Belting HG, Bollekens JA, Ruddle FH. 1996. A longrange regulatory element of Hoxc8 identified by using the pClasper vector. Proc Natl Acad Sci USA 93:2426-2430.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 2426-2430
-
-
Bradshaw, M.S.1
Shashikant, C.S.2
Belting, H.G.3
Bollekens, J.A.4
Ruddle, F.H.5
-
9
-
-
0028950248
-
Hox genes and the evolution of vertebrate axial morphology
-
Burke AC, Nelson CE, Morgan BA, Tabin C. 1995. Hox genes and the evolution of vertebrate axial morphology. Development 121:333-346.
-
(1995)
Development
, vol.121
, pp. 333-346
-
-
Burke, A.C.1
Nelson, C.E.2
Morgan, B.A.3
Tabin, C.4
-
11
-
-
0037117587
-
Molecular evolution of the HoxA cluster in the three major gnathostome lineages
-
Chiu CH, Amemiya C, Dewar K, Kim CB, Ruddle FH, Wagner GP. 2002. Molecular evolution of the HoxA cluster in the three major gnathostome lineages. Proc Natl Acad Sci USA 99:5492-5497.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 5492-5497
-
-
Chiu, C.H.1
Amemiya, C.2
Dewar, K.3
Kim, C.B.4
Ruddle, F.H.5
Wagner, G.P.6
-
12
-
-
0033519674
-
Developmental basis of limblessness and axial patterning in snakes
-
Cohn MJ, Tickle C. 1999. Developmental basis of limblessness and axial patterning in snakes. Nature 399:474-479.
-
(1999)
Nature
, vol.399
, pp. 474-479
-
-
Cohn, M.J.1
Tickle, C.2
-
13
-
-
0024947630
-
The caudal gene product is a direct activator of fushi tarazu transcription during Drosophila embryogenesis
-
Dearolf CR, Topol J, Parker CS. 1989. The caudal gene product is a direct activator of fushi tarazu transcription during Drosophila embryogenesis. Nature 341:340-343.
-
(1989)
Nature
, vol.341
, pp. 340-343
-
-
Dearolf, C.R.1
Topol, J.2
Parker, C.S.3
-
14
-
-
0028897837
-
Evolutionary-conserved enhancers direct region-specific expression of the murine Hoxa-1 and Hoxa-2 loci in both mice and Drosophila
-
Frasch M, Chen X, Lufkin T. 1995. Evolutionary-conserved enhancers direct region-specific expression of the murine Hoxa-1 and Hoxa-2 loci in both mice and Drosophila. Development 121:957-974.
-
(1995)
Development
, vol.121
, pp. 957-974
-
-
Frasch, M.1
Chen, X.2
Lufkin, T.3
-
15
-
-
0028090063
-
Conservation in the Hox code during morphological evolution
-
Gaunt SJ. 1994. Conservation in the Hox code during morphological evolution. Int J Dev Biol 38:549-552.
-
(1994)
Int J Dev Biol
, vol.38
, pp. 549-552
-
-
Gaunt, S.J.1
-
16
-
-
0031260032
-
Interspecies exchange of a Hoxd enhancer in vivo induces premature transcription and anterior shift of the sacrum
-
Gerard M, Zakany J, Duboule D. 1997. Interspecies exchange of a Hoxd enhancer in vivo induces premature transcription and anterior shift of the sacrum. Dev Biol 190:32-40.
-
(1997)
Dev Biol
, vol.190
, pp. 32-40
-
-
Gerard, M.1
Zakany, J.2
Duboule, D.3
-
17
-
-
12944332088
-
Mammalian Trithorax and polycomb-group homologues are antagonistic regulators of homeotic development
-
Hanson RD, Hess JL, Yu BD, Ernst P, van Lohuizen M, Berns A, van der Lugt NM, Shashikant CS, Ruddle FH, Seto M, Korsmeyer SJ. 1999. Mammalian Trithorax and polycomb-group homologues are antagonistic regulators of homeotic development. Proc Natl Acad Sci USA 96:14372-14377.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 14372-14377
-
-
Hanson, R.D.1
Hess, J.L.2
Yu, B.D.3
Ernst, P.4
Van Lohuizen, M.5
Berns, A.6
Van Der Lugt, N.M.7
Shashikant, C.S.8
Ruddle, F.H.9
Seto, M.10
Korsmeyer, S.J.11
-
18
-
-
0033518287
-
The future of evolutionary developmental biology
-
Holland PW. 1999. The future of evolutionary developmental biology. Nature 402:C41-C44.
-
(1999)
Nature
, vol.402
-
-
Holland, P.W.1
-
19
-
-
0142212148
-
Enhancer timing of Hox gene expression: Deletion of the endogenous Hoxc8 early enhancer
-
Juan AH, Ruddle FH. 2003. Enhancer timing of Hox gene expression: deletion of the endogenous Hoxc8 early enhancer. Development 130:4823-4834.
-
(2003)
Development
, vol.130
, pp. 4823-4834
-
-
Juan, A.H.1
Ruddle, F.H.2
-
20
-
-
12944301125
-
Hox cluster genomics in the horn shark, Heterodontus francisci
-
Kim CB, Amemiya C, Bailey W, Kawasaki K, Mezey J, Miller W, Minoshima S, Shimizu N, Wagner G, Ruddle F. 2000. Hox cluster genomics in the horn shark, Heterodontus francisci. Proc Natl Acad Sci USA 97:1655-1660.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 1655-1660
-
-
Kim, C.B.1
Amemiya, C.2
Bailey, W.3
Kawasaki, K.4
Mezey, J.5
Miller, W.6
Minoshima, S.7
Shimizu, N.8
Wagner, G.9
Ruddle, F.10
-
21
-
-
0346448016
-
Phylogenetic analysis of the mammalian Hoxc8 non-coding region
-
Kim CB, Shashikant CS, Sumiyama K, Wang WC, Amemiya CT, Ruddle FH. 2003. Phylogenetic analysis of the mammalian Hoxc8 non-coding region. J Struct Funct Genomics 3:195-199.
-
(2003)
J Struct Funct Genomics
, vol.3
, pp. 195-199
-
-
Kim, C.B.1
Shashikant, C.S.2
Sumiyama, K.3
Wang, W.C.4
Amemiya, C.T.5
Ruddle, F.H.6
-
22
-
-
0038115063
-
Organizing axes in time and space; 25 years of colinear tinkering
-
Kmita M, Duboule D. 2003. Organizing axes in time and space; 25 years of colinear tinkering. Science 301:331-333.
-
(2003)
Science
, vol.301
, pp. 331-333
-
-
Kmita, M.1
Duboule, D.2
-
23
-
-
0027953771
-
Hox genes in vertebrate development
-
Krumlauf R. 1994. Hox genes in vertebrate development. Cell 78:191-201.
-
(1994)
Cell
, vol.78
, pp. 191-201
-
-
Krumlauf, R.1
-
24
-
-
0030272803
-
Transcriptional control of Hox genes in the vertebrate nervous system
-
Lufkin T. 1996. Transcriptional control of Hox genes in the vertebrate nervous system. Curr Opin Genet Dev 6:575-580.
-
(1996)
Curr Opin Genet Dev
, vol.6
, pp. 575-580
-
-
Lufkin, T.1
-
25
-
-
0028065238
-
A conserved retinoic acid response element required for early expression of the homeobox gene Hoxb-1
-
Marshall H, Studer M, Popperl H, Aparicio S, Kuroiwa A, Brenner S, Krumlauf R. 1994. A conserved retinoic acid response element required for early expression of the homeobox gene Hoxb-1. Nature 370:567-571.
-
(1994)
Nature
, vol.370
, pp. 567-571
-
-
Marshall, H.1
Studer, M.2
Popperl, H.3
Aparicio, S.4
Kuroiwa, A.5
Brenner, S.6
Krumlauf, R.7
-
26
-
-
18744373853
-
MLL targets SET domain methyltransferase activity to Hox gene promoters
-
Milne TA, Briggs SD, Brock HW, Martin ME, Gibbs D, Allis CD, Hess JL. 2002. MLL targets SET domain methyltransferase activity to Hox gene promoters. Mol Cell 10:1107-1117.
-
(2002)
Mol Cell
, vol.10
, pp. 1107-1117
-
-
Milne, T.A.1
Briggs, S.D.2
Brock, H.W.3
Martin, M.E.4
Gibbs, D.5
Allis, C.D.6
Hess, J.L.7
-
27
-
-
0029055810
-
Segmental expression of Hoxb-1 is controlled by a highly conserved autoregulatory loop dependent upon exd/pbx
-
Popperl H, Bienz M, Studer M, Chan SK, Aparicio S, Brenner S, Mann RS, Krumlauf R. 1995. Segmental expression of Hoxb-1 is controlled by a highly conserved autoregulatory loop dependent upon exd/pbx. Cell 81:1031-1042.
-
(1995)
Cell
, vol.81
, pp. 1031-1042
-
-
Popperl, H.1
Bienz, M.2
Studer, M.3
Chan, S.K.4
Aparicio, S.5
Brenner, S.6
Mann, R.S.7
Krumlauf, R.8
-
28
-
-
0036382945
-
The Hox Paradox: More complex(es) than imagined
-
Prince V. 2002. The Hox Paradox: More complex(es) than imagined. Dev Biol 249:1-15.
-
(2002)
Dev Biol
, vol.249
, pp. 1-15
-
-
Prince, V.1
-
29
-
-
0032796625
-
Evolution of chordate hox gene clusters
-
Ruddle FH, Amemiya CT, Carr JL, Kim CB, Ledje C, Shashikant CS, Wagner GP. 1999. Evolution of chordate hox gene clusters. Ann N Y Acad Sci 870:238-248.
-
(1999)
Ann N Y Acad Sci
, vol.870
, pp. 238-248
-
-
Ruddle, F.H.1
Amemiya, C.T.2
Carr, J.L.3
Kim, C.B.4
Ledje, C.5
Shashikant, C.S.6
Wagner, G.P.7
-
30
-
-
0029590307
-
Regulation of Hoxc8 during mouse embryonic development: Identification and characterization of critical elements involved in early neural tube expression
-
Shashikant CS, Bieberich CJ, Belting HG, Wang JC, Borbely MA, Ruddle FH. 1995. Regulation of Hoxc8 during mouse embryonic development: identification and characterization of critical elements involved in early neural tube expression. Development 121:4339-4347.
-
(1995)
Development
, vol.121
, pp. 4339-4347
-
-
Shashikant, C.S.1
Bieberich, C.J.2
Belting, H.G.3
Wang, J.C.4
Borbely, M.A.5
Ruddle, F.H.6
-
31
-
-
0029864497
-
Combinations of closely situated cis-acting elements determine tissue-specific patterns and anterior extent of early Hoxc8 expression
-
Shashikant CS, Ruddle FH. 1996. Combinations of closely situated cis-acting elements determine tissue-specific patterns and anterior extent of early Hoxc8 expression. Proc Natl Acad Sci USA 93:12364-12369.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 12364-12369
-
-
Shashikant, C.S.1
Ruddle, F.H.2
-
32
-
-
0032417693
-
Comparative studies on mammalian Hoxc8 early enhancer sequence reveal a baleen whale-specific deletion of a cis-acting element
-
Shashikant CS, Kim CB, Borbely MA, Wang WC, Ruddle FH. 1998. Comparative studies on mammalian Hoxc8 early enhancer sequence reveal a baleen whale-specific deletion of a cis-acting element. Proc Natl Acad Sci USA 95:15446-15451.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 15446-15451
-
-
Shashikant, C.S.1
Kim, C.B.2
Borbely, M.A.3
Wang, W.C.4
Ruddle, F.H.5
-
33
-
-
0028150628
-
Role of a conserved retinoic acid response element in rhombomere restriction of Hoxb-1
-
Studer M, Popperl H, Marshall H, Kuroiwa A, Krumlauf R. 1994. Role of a conserved retinoic acid response element in rhombomere restriction of Hoxb-1. Science 265:1728-1732.
-
(1994)
Science
, vol.265
, pp. 1728-1732
-
-
Studer, M.1
Popperl, H.2
Marshall, H.3
Kuroiwa, A.4
Krumlauf, R.5
-
34
-
-
0035862568
-
An efficient cis-element discovery method using multiple sequence comparisons based on evolutionary relationships
-
Sumiyama K, Kim CB, Ruddle FH. 2001. An efficient cis-element discovery method using multiple sequence comparisons based on evolutionary relationships. Genomics 71:260-262.
-
(2001)
Genomics
, vol.71
, pp. 260-262
-
-
Sumiyama, K.1
Kim, C.B.2
Ruddle, F.H.3
-
35
-
-
0037154177
-
Genomic structure and functional control of the Dlx3-7 bigene cluster
-
Sumiyama K, Irvine SQ, Stock DW, Weiss KM, Kawasaki K, Shimizu N, Shashikant CS, Miller W, Ruddle FH. 2002. Genomic structure and functional control of the Dlx3-7 bigene cluster. Proc Natl Acad Sci USA 99:780-785.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 780-785
-
-
Sumiyama, K.1
Irvine, S.Q.2
Stock, D.W.3
Weiss, K.M.4
Kawasaki, K.5
Shimizu, N.6
Shashikant, C.S.7
Miller, W.8
Ruddle, F.H.9
-
36
-
-
0037388173
-
Regulation of Dlx3 gene expression in visceral arches by evolutionary conserved enhancer elements
-
Sumiyama K, Ruddle FH. 2003. Regulation of Dlx3 gene expression in visceral arches by evolutionary conserved enhancer elements. Proc Natl Acad Sci USA 100:4030-4034.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 4030-4034
-
-
Sumiyama, K.1
Ruddle, F.H.2
-
37
-
-
0036607102
-
Conservation and diversity in the cis-regulatory networks that integrate information controlling expression of Hoxa2 in hindbrain and cranial neural crest cells in vertebrates
-
Tumpel S, Maconochie M, Wiedemann LM, Krumlauf R. 2002. Conservation and diversity in the cis-regulatory networks that integrate information controlling expression of Hoxa2 in hindbrain and cranial neural crest cells in vertebrates. Dev Biol 246:45-56.
-
(2002)
Dev Biol
, vol.246
, pp. 45-56
-
-
Tumpel, S.1
Maconochie, M.2
Wiedemann, L.M.3
Krumlauf, R.4
-
38
-
-
0344736730
-
Hox cluster duplications and the opportunity for evolutionary novelties
-
Wagner GP, Amemiya C, Ruddle F. 2003. Hox cluster duplications and the opportunity for evolutionary novelties. Proc Natl Acad Sci USA 100:14603-14606.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 14603-14606
-
-
Wagner, G.P.1
Amemiya, C.2
Ruddle, F.3
-
39
-
-
0032526641
-
Chromatin remodeling of the interleukin-2 gene: Distinct alterations in the proximal versus distal enhancer regions
-
Ward SB, Hernandez-Hoyos G, Chen F, Waterman M, Reeves R, Rothenberg EV. 1998. Chromatin remodeling of the interleukin-2 gene: distinct alterations in the proximal versus distal enhancer regions. Nucleic Acids Res 26:2923-2934.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 2923-2934
-
-
Ward, S.B.1
Hernandez-Hoyos, G.2
Chen, F.3
Waterman, M.4
Reeves, R.5
Rothenberg, E.V.6
-
40
-
-
0042697343
-
The evolution of transcriptional regulation in eukaryotes
-
Wray GA, Hahn MW, Abouheif E, Balhoff JP, Pizer M, Rockman MV, Romano LA. 2003. The evolution of transcriptional regulation in eukaryotes. Mol Biol Evol 20:1377-1419.
-
(2003)
Mol Biol Evol
, vol.20
, pp. 1377-1419
-
-
Wray, G.A.1
Hahn, M.W.2
Abouheif, E.3
Balhoff, J.P.4
Pizer, M.5
Rockman, M.V.6
Romano, L.A.7
-
41
-
-
0032014216
-
Human Smad3 and Smad4 are sequence-specific transcription activators
-
Zawel L, Dai JL, Buckhaults P, Zhou S, Kinzler KW, Vogelstein B, Kern SE. 1998. Human Smad3 and Smad4 are sequence-specific transcription activators. Mol Cell 1:611-617.
-
(1998)
Mol Cell
, vol.1
, pp. 611-617
-
-
Zawel, L.1
Dai, J.L.2
Buckhaults, P.3
Zhou, S.4
Kinzler, K.W.5
Vogelstein, B.6
Kern, S.E.7
|