-
1
-
-
0035836728
-
Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach
-
USA
-
BEERLI, P., and J. FELSENSTEIN, 2001 Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach. Proc. Natl. Acad. Sci. USA 98: 4563-4568.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 4563-4568
-
-
Beerli, P.1
Felsenstein, J.2
-
2
-
-
0000913755
-
Spatial interaction and the statistical analysis of lattice systems
-
BESAG, J., 1974 Spatial interaction and the statistical analysis of lattice systems. J. R. Stat. Soc. Ser. B 36: 192-236.
-
(1974)
J. R. Stat. Soc. Ser. B
, vol.36
, pp. 192-236
-
-
Besag, J.1
-
3
-
-
0027386016
-
Effective sizes for subdivided populations
-
CHESSER, R. K., O. E. RHODES, JR., D. W. SUGG and A. SCHNABEL, 1993 Effective sizes for subdivided populations. Genetics 135: 1221-1232.
-
(1993)
Genetics
, vol.135
, pp. 1221-1232
-
-
Chesser, R.K.1
Rhodes Jr., O.E.2
Sugg, D.W.3
Schnabel, A.4
-
5
-
-
0030741420
-
Sociometric risk networks and risk for HIV infection
-
FRIEDMAN, S. R., A. NEAIGUS, B. JOSE, R. CURTIS, M. GOLDSTEIN et al., 1997 Sociometric risk networks and risk for HIV infection. Am. J. Public Health 87: 1289-1296.
-
(1997)
Am. J. Public Health
, vol.87
, pp. 1289-1296
-
-
Friedman, S.R.1
Neaigus, A.2
Jose, B.3
Curtis, R.4
Goldstein, M.5
-
6
-
-
0001279747
-
Population genetic models of source-sink metapopulations
-
GAGGIOTTI, O. E., 1996 Population genetic models of source-sink metapopulations. Theor. Popul. Biol. 50: 178-208.
-
(1996)
Theor. Popul. Biol.
, vol.50
, pp. 178-208
-
-
Gaggiotti, O.E.1
-
7
-
-
0029993305
-
Sexual mixing patterns of patients attending sexually transmitted diseases clinics
-
GARNETT, G. P., J. P. HUGHES, R. M. ANDERSON, B. P. STONER, S. O. ARAL et al., 1996 Sexual mixing patterns of patients attending sexually transmitted diseases clinics. Sex. Transm. Dis. 23: 249-257.
-
(1996)
Sex. Transm. Dis.
, vol.23
, pp. 249-257
-
-
Garnett, G.P.1
Hughes, J.P.2
Anderson, R.M.3
Stoner, B.P.4
Aral, S.O.5
-
9
-
-
0037338702
-
Heterosexual transmission of HIV in Africa: An empiric estimate
-
GISSELQUIST, D., and J. J. POTTERAT, 2003 Heterosexual transmission of HIV in Africa: an empiric estimate. Int. J. STD AIDS 14: 162-173.
-
(2003)
Int. J. STD AIDS
, vol.14
, pp. 162-173
-
-
Gisselquist, D.1
Potterat, J.J.2
-
10
-
-
0032912338
-
Population dynamics of HIV-1 inferred from gene sequences
-
GRASSLY, N. C., P. H. HARVEY and E. C. HOLMES, 1999 Population dynamics of HIV-1 inferred from gene sequences. Genetics 151: 427-438.
-
(1999)
Genetics
, vol.151
, pp. 427-438
-
-
Grassly, N.C.1
Harvey, P.H.2
Holmes, E.C.3
-
11
-
-
0000187077
-
Genetic effective size of a metapopulation
-
edited by I. HANSKI and M. E. GILPIN. Academic Press, New York
-
HEDRICK, P. W., and M. E. GILPIN, 1997 Genetic effective size of a metapopulation, pp. 165-181 in Metapopulation Biology: Ecology, Genetics and Evolution, edited by I. HANSKI and M. E. GILPIN. Academic Press, New York.
-
(1997)
Metapopulation Biology: Ecology, Genetics and Evolution
, pp. 165-181
-
-
Hedrick, P.W.1
Gilpin, M.E.2
-
12
-
-
0029991257
-
The estimated prevalence and incidence of HIV in 96 large US metropolitan areas
-
HOLMBERG, S. D., 1996 The estimated prevalence and incidence of HIV in 96 large US metropolitan areas. Am. J. Public Health 86: 642-654.
-
(1996)
Am. J. Public Health
, vol.86
, pp. 642-654
-
-
Holmberg, S.D.1
-
13
-
-
0002277392
-
The molecular population dynamics of HIV-1
-
edited by K. A. CRANDALL. Johns Hopkins University Press, Baltimore
-
HOLMES, E. C., O. G. PYBUS and P. H. HARVEY, 1999 The molecular population dynamics of HIV-1, pp. 177-207 in The Evolution of HIV, edited by K. A. CRANDALL. Johns Hopkins University Press, Baltimore.
-
(1999)
The Evolution of HIV
, pp. 177-207
-
-
Holmes, E.C.1
Pybus, O.G.2
Harvey, P.H.3
-
14
-
-
0028366512
-
Social networks and infectious disease: The Colorado Springs study
-
KLOVDAHL, A. S., J. J. POTTERAT, D. E. WOODHOUSE, J. B. MUTH, S. Q. MUTH et al., 1994 Social networks and infectious disease: the Colorado Springs study. Soc. Sci. Med. 38: 79-88.
-
(1994)
Soc. Sci. Med.
, vol.38
, pp. 79-88
-
-
Klovdahl, A.S.1
Potterat, J.J.2
Woodhouse, D.E.3
Muth, J.B.4
Muth, S.Q.5
-
15
-
-
0003672308
-
-
University of Chicago Press, Chicago
-
LAUMANN, E. O., J. H. GAGNON, R. T. MICHAEL and S. MICHAELS, 1994 The Social Organization of Sexuality: Sexual Practices in the United States. University of Chicago Press, Chicago.
-
(1994)
The Social Organization of Sexuality: Sexual Practices in the United States
-
-
Laumann, E.O.1
Gagnon, J.H.2
Michael, R.T.3
Michaels, S.4
-
16
-
-
0004732896
-
Analysis of HIV-1 env gene sequences reveals evidence for a low effective number in the viral population
-
USA
-
LEIGH BROWN, A. J., 1997 Analysis of HIV-1 env gene sequences reveals evidence for a low effective number in the viral population. Proc. Natl. Acad. Sci. USA 94: 1862-1865.
-
(1997)
Proc. Natl. Acad. Sci.
, vol.94
, pp. 1862-1865
-
-
Leigh Brown, A.J.1
-
17
-
-
17344391186
-
The molecular epidemiology of human immunodeficiency virus type 1 in six cities in Britain and Ireland
-
LEIGH BROWN, A. J., D. LOBIDEL, C. M. WADE, S. REBUS, A. N. PHILLIPS et al., 1997 The molecular epidemiology of human immunodeficiency virus type 1 in six cities in Britain and Ireland. Virology 235: 166-177.
-
(1997)
Virology
, vol.235
, pp. 166-177
-
-
Leigh Brown, A.J.1
Lobidel, D.2
Wade, C.M.3
Rebus, S.4
Phillips, A.N.5
-
18
-
-
0032844525
-
The molecular clock of HIV-1 unveiled through analysis of a known transmission history
-
USA
-
LEITNER, T., and J. ALBERT, 1999 The molecular clock of HIV-1 unveiled through analysis of a known transmission history. Proc. Natl. Acad. Sci. USA 96: 10752-10757.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 10752-10757
-
-
Leitner, T.1
Albert, J.2
-
19
-
-
0031010764
-
Tempo and mode of nucleotide substitutions in gag and env gene fragments in human immunodeficiency virus type 1 populations with a known transmission history
-
LEITNER, T., S. KUMAR and J. ALBERT, 1997 Tempo and mode of nucleotide substitutions in gag and env gene fragments in human immunodeficiency virus type 1 populations with a known transmission history. J. Virol. 71: 4761-4770.
-
(1997)
J. Virol.
, vol.71
, pp. 4761-4770
-
-
Leitner, T.1
Kumar, S.2
Albert, J.3
-
20
-
-
0032127568
-
Heterosexual transmission of human immunodeficiency virus: Variability of infectivity throughout the course of infection
-
LEYNAERT, B., A. M. DOWNS and I. DE VINCENZI, 1998 Heterosexual transmission of human immunodeficiency virus: variability of infectivity throughout the course of infection. Am. J. Epidemiol. 148: 88-96.
-
(1998)
Am. J. Epidemiol.
, vol.148
, pp. 88-96
-
-
Leynaert, B.1
Downs, A.M.2
De Vincenzi, I.3
-
21
-
-
0023128235
-
The impact of AIDS on gay male sexual behavior patterns in New York City
-
MARTIN, J. L., 1987 The impact of AIDS on gay male sexual behavior patterns in New York City. Am. J. Public Health 77: 578-581.
-
(1987)
Am. J. Public Health
, vol.77
, pp. 578-581
-
-
Martin, J.L.1
-
22
-
-
0026596696
-
Genetic analysis of HIV-1 isolates from Zambia and an expanded phylogenetic tree for HIV-1
-
MCCUTCHAN, F. E., B. L. UNGAR, P. HEGERICH, C. R. ROBERTS, A. K. FOWLER et al., 1992 Genetic analysis of HIV-1 isolates from Zambia and an expanded phylogenetic tree for HIV-1. J. AIDS 5: 441-449.
-
(1992)
J. AIDS
, vol.5
, pp. 441-449
-
-
McCutchan, F.E.1
Ungar, B.L.2
Hegerich, P.3
Roberts, C.R.4
Fowler, A.K.5
-
23
-
-
5744249209
-
Equation of state calculations by fast computing machines
-
METROPOLIS, N., A. W. ROSENBLUTH, M. N. ROSENBLUTH, A. H. TELLER and E. TELLER, 1953 Equation of state calculations by fast computing machines. J. Chem. Phys. 21: 1087-1092.
-
(1953)
J. Chem. Phys.
, vol.21
, pp. 1087-1092
-
-
Metropolis, N.1
Rosenbluth, A.W.2
Rosenbluth, M.N.3
Teller, A.H.4
Teller, E.5
-
24
-
-
0027989571
-
Effect of sexual behavior change on long-term human immunodeficiency virus prevalence among homosexual men
-
MORRIS, M., and L. DEAN, 1994 Effect of sexual behavior change on long-term human immunodeficiency virus prevalence among homosexual men. Am. J. Epidemiol. 140: 217-232.
-
(1994)
Am. J. Epidemiol.
, vol.140
, pp. 217-232
-
-
Morris, M.1
Dean, L.2
-
25
-
-
0031002324
-
Concurrent partnerships and the spread of HIV
-
MORRIS, M., and M. KRETZSCHMAR, 1997 Concurrent partnerships and the spread of HIV. AIDS 11: 641-648.
-
(1997)
AIDS
, vol.11
, pp. 641-648
-
-
Morris, M.1
Kretzschmar, M.2
-
26
-
-
0029792594
-
Bridge populations in the spread of HIV/AIDS in Thailand
-
MORRIS, M., C. PODHISITA, M. J. WAWER and M. S. HANDCOCK, 1996 Bridge populations in the spread of HIV/AIDS in Thailand. AIDS 10: 1265-1271.
-
(1996)
AIDS
, vol.10
, pp. 1265-1271
-
-
Morris, M.1
Podhisita, C.2
Wawer, M.J.3
Handcock, M.S.4
-
27
-
-
0028211410
-
HIV seroconversion in intravenous drug users in San Francisco, 1985-1990
-
MOSS, A. R., K. VRANIZAN, R. GORTER, P. BACCHETTI, J. WATTERS et al., 1994 HIV seroconversion in intravenous drug users in San Francisco, 1985-1990. AIDS 8: 223-231.
-
(1994)
AIDS
, vol.8
, pp. 223-231
-
-
Moss, A.R.1
Vranizan, K.2
Gorter, R.3
Bacchetti, P.4
Watters, J.5
-
29
-
-
0029654016
-
Inferring population history from molecular phylogenies
-
NEE, S., E. C. HOLMES, A. RAMBAUT and P. H. HARVEY, 1995 Inferring population history from molecular phylogenies. Philos. Trans. R. Soc. Lond. 349: 25-31.
-
(1995)
Philos. Trans. R. Soc. Lond.
, vol.349
, pp. 25-31
-
-
Nee, S.1
Holmes, E.C.2
Rambaut, A.3
Harvey, P.H.4
-
30
-
-
0032564366
-
Stochastic processes strongly influence HIV-1 evolution during suboptimal protease-inhibitor therapy
-
USA
-
NIJHUIS, M., C. A. BOUCHER, P. SCHIPPER, T. LEITNER, R. SCHUURMAN et al., 1998 Stochastic processes strongly influence HIV-1 evolution during suboptimal protease-inhibitor therapy. Proc. Natl. Acad. Sci. USA 95: 14441-14446.
-
(1998)
Proc. Natl. Acad. Sci.
, vol.95
, pp. 14441-14446
-
-
Nijhuis, M.1
Boucher, C.A.2
Schipper, P.3
Leitner, T.4
Schuurman, R.5
-
32
-
-
0026777199
-
Molecular epidemiology of HIV transmission in a dental practice
-
OU, C. Y., C. A. CIESIELSKI, G. MYERS, C. I. BANDEA, C. C. LUO et al., 1992 Molecular epidemiology of HIV transmission in a dental practice. Science 256: 1165-1171.
-
(1992)
Science
, vol.256
, pp. 1165-1171
-
-
Ou, C.Y.1
Ciesielski, C.A.2
Myers, G.3
Bandea, C.I.4
Luo, C.C.5
-
33
-
-
0036773016
-
GENIE: Estimating demographic history from molecular phylogenies
-
PYBUS, O. G., and A. RAMBAUT, 2002a GENIE: estimating demographic history from molecular phylogenies. Bioinformatics 18: 1404-1405.
-
(2002)
Bioinformatics
, vol.18
, pp. 1404-1405
-
-
Pybus, O.G.1
Rambaut, A.2
-
35
-
-
0033911330
-
An integrated framework for the inference of viral population history from reconstructed genealogies
-
PYBUS, O. G., A. RAMBAUT and P. H. HARVEY, 2000 An integrated framework for the inference of viral population history from reconstructed genealogies. Genetics 155: 1429-1437.
-
(2000)
Genetics
, vol.155
, pp. 1429-1437
-
-
Pybus, O.G.1
Rambaut, A.2
Harvey, P.H.3
-
36
-
-
0002667169
-
Coalescent approaches to HIV population genetics
-
edited by K. A. CRANDALL. Johns Hopkins University Press, Baltimore
-
RODRIGO, A. G., and J. FELSENSTEIN, 1999 Coalescent approaches to HIV population genetics, pp. 233-272 in The Evolution of HIV, edited by K. A. CRANDALL. Johns Hopkins University Press, Baltimore.
-
(1999)
The Evolution of HIV
, pp. 233-272
-
-
Rodrigo, A.G.1
Felsenstein, J.2
-
37
-
-
0033515016
-
Coalescent estimates of HIV-1 generation time in vivo
-
USA
-
RODRIGO, A. G., E. G. SHPAER, E. L. DELWART, A. K. IVERSEN, M. V. GALLO et al., 1999 Coalescent estimates of HIV-1 generation time in vivo. Proc. Natl. Acad. Sci. USA 96: 2187-2191.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 2187-2191
-
-
Rodrigo, A.G.1
Shpaer, E.G.2
Delwart, E.L.3
Iversen, A.K.4
Gallo, M.V.5
-
38
-
-
0031929724
-
Using social network and ethnographic tools to evaluate syphilis transmission
-
ROTHENBERG, R. B., C. STERK, K. E. TOOMEY, J. J. POTTERAT, D. JOHNSON et al., 1998 Using social network and ethnographic tools to evaluate syphilis transmission. Sex. Transm. Dis. 25: 154-160.
-
(1998)
Sex. Transm. Dis.
, vol.25
, pp. 154-160
-
-
Rothenberg, R.B.1
Sterk, C.2
Toomey, K.E.3
Potterat, J.J.4
Johnson, D.5
-
39
-
-
0032824180
-
Linkage disequilibrium test implies a large effective population number for HIV in vivo
-
USA
-
ROUZINE, I. M., and J. M. COFFIN, 1999 Linkage disequilibrium test implies a large effective population number for HIV in vivo. Proc. Natl. Acad. Sci. USA 96: 10758-10763.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 10758-10763
-
-
Rouzine, I.M.1
Coffin, J.M.2
-
40
-
-
0032535204
-
Epidemiological evidence for time variation in HIV infectivity
-
SHIBOSKI, S. C., and N. S. PADIAN, 1998 Epidemiological evidence for time variation in HIV infectivity. J. AIDS Hum. Retrovirol. 19: 627-635.
-
(1998)
J. AIDS Hum. Retrovirol.
, vol.19
, pp. 627-635
-
-
Shiboski, S.C.1
Padian, N.S.2
-
41
-
-
0003314308
-
Markov chain Monte Carlo estimation of exponential random graph models
-
SNIJDERS, T. A. B., 2002 Markov chain Monte Carlo estimation of exponential random graph models. JoSS. 3: 1-40.
-
(2002)
JoSS.
, vol.3
, pp. 1-40
-
-
Snijders, T.A.B.1
-
42
-
-
0001399123
-
Pseudolikelihood estimation for social networks
-
STRAUSS, D., and M. IKEDA, 1990 Pseudolikelihood estimation for social networks. J. Am. Stat. Assoc. 85: 204-212.
-
(1990)
J. Am. Stat. Assoc.
, vol.85
, pp. 204-212
-
-
Strauss, D.1
Ikeda, M.2
-
43
-
-
0035211479
-
Exploring the demographic history of DNA sequences using the generalized skyline plot
-
STRIMMER, K., and O. G. PYBUS, 2001 Exploring the demographic history of DNA sequences using the generalized skyline plot. Mol. Biol. Evol. 18: 2298-2305.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 2298-2305
-
-
Strimmer, K.1
Pybus, O.G.2
-
44
-
-
0026761122
-
High-resolution structure of an HIV-1 quasispecies: Identification of novel coding sequences
-
VARTANIAN, J. P., A. MEYERHANS, M. HENRY and S. WAIN-HOBSON, 1992 High-resolution structure of an HIV-1 quasispecies: identification of novel coding sequences. AIDS 6: 1095-1098.
-
(1992)
AIDS
, vol.6
, pp. 1095-1098
-
-
Vartanian, J.P.1
Meyerhans, A.2
Henry, M.3
Wain-Hobson, S.4
-
45
-
-
0037385669
-
Network analysis of human and simian immunodeficiency virus sequence sets reveals massive recombination resulting in shorter pathways
-
WAIN-HOBSON, S., C. RENOUX-ELBE, J. P. VARTANIAN and A. MEYERHANS, 2003 Network analysis of human and simian immunodeficiency virus sequence sets reveals massive recombination resulting in shorter pathways. J. Gen. Virol. 84: 885-895.
-
(2003)
J. Gen. Virol.
, vol.84
, pp. 885-895
-
-
Wain-Hobson, S.1
Renoux-Elbe, C.2
Vartanian, J.P.3
Meyerhans, A.4
-
46
-
-
0034758281
-
Gene genealogies in a metopopulation
-
WAKELEY, J., and N. ALIACAR, 2001 Gene genealogies in a metopopulation. Genetics 159: 893-905.
-
(2001)
Genetics
, vol.159
, pp. 893-905
-
-
Wakeley, J.1
Aliacar, N.2
-
47
-
-
0030491229
-
Logit models and logistic regression for social networks: I. An introduction to Markov graphs and p*
-
WASSERMAN, S., and P. PATTISON, 1996 Logit models and logistic regression for social networks: I. An introduction to Markov graphs and p*. Psychometrika 60: 401-426.
-
(1996)
Psychometrika
, vol.60
, pp. 401-426
-
-
Wasserman, S.1
Pattison, P.2
-
48
-
-
0026505445
-
The influence of concurrent partnerships on the dynamics of HIV/AIDS
-
WATTS, C. H., and R. M. MAY, 1992 The influence of concurrent partnerships on the dynamics of HIV/AIDS. Math. Biosci. 108: 89-104.
-
(1992)
Math. Biosci.
, vol.108
, pp. 89-104
-
-
Watts, C.H.1
May, R.M.2
|