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Volumn 10, Issue , 2009, Pages

Identification of genes associated with multiple cancers via integrative analysis

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ANALYTIC METHOD; ARTICLE; CANCER GROWTH; CONTROLLED STUDY; GENE IDENTIFICATION; GENETIC ASSOCIATION; GENETIC SELECTION; HUMAN; MICROARRAY ANALYSIS; MULTI CANCER THRESHOLD GRADIENT DESCENT; MULTIPLE CANCER; BIOLOGY; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENETIC DATABASE; GENETIC PREDISPOSITION; GENETICS; NEOPLASM; PROGNOSIS; SURVIVAL; TUMOR GENE;

EID: 71549151619     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-10-535     Document Type: Article
Times cited : (17)

References (43)
  • 1
    • 2942513130 scopus 로고    scopus 로고
    • Bioinformatics strategies for translating genome-wide expression analyses into clinically useful cancer markers
    • 10.1196/annals.1310.005, 15208181
    • Rhodes D, Chinnaiyan AM. Bioinformatics strategies for translating genome-wide expression analyses into clinically useful cancer markers. Annals of the New York Academy of Sciences 2004, 1020:32-40. 10.1196/annals.1310.005, 15208181.
    • (2004) Annals of the New York Academy of Sciences , vol.1020 , pp. 32-40
    • Rhodes, D.1    Chinnaiyan, A.M.2
  • 3
    • 49949090353 scopus 로고    scopus 로고
    • Penalized feature selection and classification in bioinformatics
    • 10.1093/bib/bbn027, 2733190, 18562478
    • Ma S, Huang J. Penalized feature selection and classification in bioinformatics. Briefings in Bioinformatics 2008, 9:392-403. 10.1093/bib/bbn027, 2733190, 18562478.
    • (2008) Briefings in Bioinformatics , vol.9 , pp. 392-403
    • Ma, S.1    Huang, J.2
  • 4
    • 79953718190 scopus 로고    scopus 로고
    • BRCA1 and BRCA2 hereditary breast/ovarian cancer
    • Petrucelli N, Daly MB, Culver JOB, Feldman GL. BRCA1 and BRCA2 hereditary breast/ovarian cancer. GeneReviews 2007, , Http://www.ncbi.nlm.nih.gov/bookshelf/br.fcgi?book=gene&part=brca1
    • (2007) GeneReviews
    • Petrucelli, N.1    Daly, M.B.2    Culver, J.O.B.3    Feldman, G.L.4
  • 5
    • 33646179794 scopus 로고    scopus 로고
    • Allelic imbalance of HER2 variant in sporadic breast and ovarian cancer
    • 10.1016/j.cancergencyto.2004.09.023, 16682283
    • Puputti M, Sihto H, Isola J, Butzow R, Joensuu H, Nupponen NN. Allelic imbalance of HER2 variant in sporadic breast and ovarian cancer. Cancer Genetics and Cytogenetics 2006, 167:32-38. 10.1016/j.cancergencyto.2004.09.023, 16682283.
    • (2006) Cancer Genetics and Cytogenetics , vol.167 , pp. 32-38
    • Puputti, M.1    Sihto, H.2    Isola, J.3    Butzow, R.4    Joensuu, H.5    Nupponen, N.N.6
  • 7
    • 0037251891 scopus 로고    scopus 로고
    • Initial evaluation of the patient with lung cancer
    • 10.1378/chest.123.1_suppl.97S, 12527569
    • Beckles MA, Spiro SG, Colice GL, Rudd RM. Initial evaluation of the patient with lung cancer. Chest 2003, 123:97S-104S. 10.1378/chest.123.1_suppl.97S, 12527569.
    • (2003) Chest , vol.123
    • Beckles, M.A.1    Spiro, S.G.2    Colice, G.L.3    Rudd, R.M.4
  • 10
    • 3042694117 scopus 로고    scopus 로고
    • Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression
    • 10.1073/pnas.0401994101, 438973, 15184677
    • Rhodes DR, Yu J, Shanker K, Deshpande N, Varambally R, Ghosh D, Barrette T, Pandey A, Chinnaiyan AM. Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression. PNAS 2004, 101:9309-9314. 10.1073/pnas.0401994101, 438973, 15184677.
    • (2004) PNAS , vol.101 , pp. 9309-9314
    • Rhodes, D.R.1    Yu, J.2    Shanker, K.3    Deshpande, N.4    Varambally, R.5    Ghosh, D.6    Barrette, T.7    Pandey, A.8    Chinnaiyan, A.M.9
  • 12
    • 6944244084 scopus 로고    scopus 로고
    • A module map showing conditional activity of expression modules in cancer
    • 10.1038/ng1434, 15448693
    • Segal E, Friedman N, Koller D. A module map showing conditional activity of expression modules in cancer. Nature Genetics 2004, 36:1090-1098. 10.1038/ng1434, 15448693.
    • (2004) Nature Genetics , vol.36 , pp. 1090-1098
    • Segal, E.1    Friedman, N.2    Koller, D.3
  • 14
    • 24344510308 scopus 로고    scopus 로고
    • Detecting common gene expression patterns in multiple cancer outcome entities
    • 10.1007/s10544-005-3032-7, 16133813
    • Yang X, Bentink S, Spang R. Detecting common gene expression patterns in multiple cancer outcome entities. Biomedical Microdevices 2005, 7:247-251. 10.1007/s10544-005-3032-7, 16133813.
    • (2005) Biomedical Microdevices , vol.7 , pp. 247-251
    • Yang, X.1    Bentink, S.2    Spang, R.3
  • 15
    • 34548127285 scopus 로고    scopus 로고
    • Large-scale integration of cancer microarray data identifies a robust common cancer signature
    • 10.1186/1471-2105-8-275, 1950528, 17663766
    • Xu L, Geman D, Winslow RL. Large-scale integration of cancer microarray data identifies a robust common cancer signature. BMC Bioinformatics 2007, 8:275. 10.1186/1471-2105-8-275, 1950528, 17663766.
    • (2007) BMC Bioinformatics , vol.8 , pp. 275
    • Xu, L.1    Geman, D.2    Winslow, R.L.3
  • 16
    • 28944444652 scopus 로고    scopus 로고
    • Differential coexpression analysis using microarray data and its application to human cancer
    • 10.1093/bioinformatics/bti722, 16234317
    • Choi JK, Yu U, Yoo OJ, Kim S. Differential coexpression analysis using microarray data and its application to human cancer. Bioinformatics 2005, 21:4348-4355. 10.1093/bioinformatics/bti722, 16234317.
    • (2005) Bioinformatics , vol.21 , pp. 4348-4355
    • Choi, J.K.1    Yu, U.2    Yoo, O.J.3    Kim, S.4
  • 17
    • 60849113429 scopus 로고    scopus 로고
    • Sparse canonical methods for biological data integration: application to a cross-platform study
    • 10.1186/1471-2105-10-34, 2640358, 19171069
    • Lê Cao KA, Martin PGP, Robert-Graniê C, Besse P. Sparse canonical methods for biological data integration: application to a cross-platform study. BMC Bioinformatics 2009, 10:34. 10.1186/1471-2105-10-34, 2640358, 19171069.
    • (2009) BMC Bioinformatics , vol.10 , pp. 34
    • Lê Cao, K.A.1    Martin, P.G.P.2    Robert-Graniê, C.3    Besse, P.4
  • 18
    • 84872264037 scopus 로고    scopus 로고
    • Stanford Microarray Database
    • Stanford Microarray Database. , http://smd.stanford.edu/
  • 19
    • 84870490179 scopus 로고    scopus 로고
    • National Center for Biotechnology Information
    • National Center for Biotechnology Information. , http://www.ncbi.nlm.nih.gov/
  • 20
    • 0036200075 scopus 로고    scopus 로고
    • Metallothionein 2A expression is associated with cell proliferation in breast cancer
    • 10.1093/carcin/23.1.81, 11756227
    • Jin R, Chow VT, Tan PH, Dheen ST, Duan W, Bay BH. Metallothionein 2A expression is associated with cell proliferation in breast cancer. Carcinogenesis 2002, 23:81-86. 10.1093/carcin/23.1.81, 11756227.
    • (2002) Carcinogenesis , vol.23 , pp. 81-86
    • Jin, R.1    Chow, V.T.2    Tan, P.H.3    Dheen, S.T.4    Duan, W.5    Bay, B.H.6
  • 21
    • 22244484078 scopus 로고    scopus 로고
    • The relationship between Metallothionein-1F (MT1F0 gene and hepatocellular carcinoma
    • Lu D, Chen Y, Zhang X, Cao X, Jiang H, Yao L. The relationship between Metallothionein-1F (MT1F0 gene and hepatocellular carcinoma. Journal of Biology and Medicine 2003, 76:55-62.
    • (2003) Journal of Biology and Medicine , vol.76 , pp. 55-62
    • Lu, D.1    Chen, Y.2    Zhang, X.3    Cao, X.4    Jiang, H.5    Yao, L.6
  • 22
    • 0034727784 scopus 로고    scopus 로고
    • In vivo gene expression profile analysis of metallothionein in renal cell carcinoma
    • 10.1016/S0304-3835(00)00534-6, 11053642
    • Nguyen A, Jing Z, Mahoney PS, Davis R, Sikka SC, Agrawal KC, Abdel-Mageed AB. In vivo gene expression profile analysis of metallothionein in renal cell carcinoma. Cancer Letters 2000, 160:133-140. 10.1016/S0304-3835(00)00534-6, 11053642.
    • (2000) Cancer Letters , vol.160 , pp. 133-140
    • Nguyen, A.1    Jing, Z.2    Mahoney, P.S.3    Davis, R.4    Sikka, S.C.5    Agrawal, K.C.6    Abdel-Mageed, A.B.7
  • 23
    • 0035221777 scopus 로고    scopus 로고
    • Metallothionein isoform 1 and 2 gene expression in the human bladder: evidence for upregulation of MT-1X mRNA in bladder cancer
    • Somji S, Sens MA, Lamm DL, Garrett SH, Sens DA. Metallothionein isoform 1 and 2 gene expression in the human bladder: evidence for upregulation of MT-1X mRNA in bladder cancer. Cancer Detection and Prevention 2001, 25:62-75.
    • (2001) Cancer Detection and Prevention , vol.25 , pp. 62-75
    • Somji, S.1    Sens, M.A.2    Lamm, D.L.3    Garrett, S.H.4    Sens, D.A.5
  • 24
    • 0033993950 scopus 로고    scopus 로고
    • Metallothionein isoform 1 and 2 gene expression in the human prostate: downregulation of MT-1X in advanced prostate cancer
    • 10.1002/(SICI)1097-0045(20000501)43:2<125::AID-PROS7>3.0.CO;2-S, 10754528
    • Garrett SH, Sens MA, Shukla D, Flores L, Somji S, Todd JH, Sens DA. Metallothionein isoform 1 and 2 gene expression in the human prostate: downregulation of MT-1X in advanced prostate cancer. Prostate 2000, 43:125-135. 10.1002/(SICI)1097-0045(20000501)43:2<125::AID-PROS7>3.0.CO;2-S, 10754528.
    • (2000) Prostate , vol.43 , pp. 125-135
    • Garrett, S.H.1    Sens, M.A.2    Shukla, D.3    Flores, L.4    Somji, S.5    Todd, J.H.6    Sens, D.A.7
  • 25
    • 29144510155 scopus 로고    scopus 로고
    • Discrimination of vanadium from zinc using gene profiling in human bronchial epithelial cells
    • 1314916, 16330358
    • Li Z, Stonehuerner J, Devlin RB, Huang YC. Discrimination of vanadium from zinc using gene profiling in human bronchial epithelial cells. Environmental Health Perspectives 2005, 113:1747-1754. 1314916, 16330358.
    • (2005) Environmental Health Perspectives , vol.113 , pp. 1747-1754
    • Li, Z.1    Stonehuerner, J.2    Devlin, R.B.3    Huang, Y.C.4
  • 26
    • 34547132562 scopus 로고    scopus 로고
    • Molecular gene expression signature patterns for gastric cancer diagnosis
    • 10.1016/j.compbiolchem.2007.06.001, 17631416
    • Yap Y, Zhang X, Smith D, Soong R, Hill J. Molecular gene expression signature patterns for gastric cancer diagnosis. Computational Biology and Chemistry 2007, 31:275-287. 10.1016/j.compbiolchem.2007.06.001, 17631416.
    • (2007) Computational Biology and Chemistry , vol.31 , pp. 275-287
    • Yap, Y.1    Zhang, X.2    Smith, D.3    Soong, R.4    Hill, J.5
  • 29
  • 30
    • 36448984298 scopus 로고    scopus 로고
    • Gene expression profiling of long-lived dwarf mice: longevity-associated genes and relationships with diet, gender and aging
    • 10.1186/1471-2164-8-353, 2094713, 17915019
    • Swindell WR. Gene expression profiling of long-lived dwarf mice: longevity-associated genes and relationships with diet, gender and aging. BMC Genomics 2007, 8:353. 10.1186/1471-2164-8-353, 2094713, 17915019.
    • (2007) BMC Genomics , vol.8 , pp. 353
    • Swindell, W.R.1
  • 31
    • 44249094670 scopus 로고    scopus 로고
    • Telomere shortening is associated with poor prognosis and telomerase activity correlates with DNA repair impairment in non-small cell lung cancer
    • 10.1016/j.lungcan.2007.11.001, 18077053
    • Frias C, Garcia-Aranda C, De Juan C, Moran A, Ortega P, Gomez A, Hernando F, Lopez-Asenjo JA, Torres AJ, Benito M, Iniesta P. Telomere shortening is associated with poor prognosis and telomerase activity correlates with DNA repair impairment in non-small cell lung cancer. Lung Cancer 2008, 60:416-425. 10.1016/j.lungcan.2007.11.001, 18077053.
    • (2008) Lung Cancer , vol.60 , pp. 416-425
    • Frias, C.1    Garcia-Aranda, C.2    De Juan, C.3    Moran, A.4    Ortega, P.5    Gomez, A.6    Hernando, F.7    Lopez-Asenjo, J.A.8    Torres, A.J.9    Benito, M.10    Iniesta, P.11
  • 33
    • 28944437658 scopus 로고    scopus 로고
    • Regularized ROC method for disease classification and biomarker selection with microarray data
    • 10.1093/bioinformatics/bti724, 16234316
    • Ma S, Huang J. Regularized ROC method for disease classification and biomarker selection with microarray data. Bioinformatics 2005, 21:4356-4362. 10.1093/bioinformatics/bti724, 16234316.
    • (2005) Bioinformatics , vol.21 , pp. 4356-4362
    • Ma, S.1    Huang, J.2
  • 34
    • 33746363482 scopus 로고    scopus 로고
    • Regularized binormal ROC method in disease classification using microarray data
    • 10.1186/1471-2105-7-253, 1513612, 16684357
    • Ma S, Song X, Huang J. Regularized binormal ROC method in disease classification using microarray data. BMC Bioinformatics 2006, 7:253. 10.1186/1471-2105-7-253, 1513612, 16684357.
    • (2006) BMC Bioinformatics , vol.7 , pp. 253
    • Ma, S.1    Song, X.2    Huang, J.3
  • 35
    • 15944409959 scopus 로고    scopus 로고
    • Threshold gradient descent method for censored data regression with applications in pharmacogenomics
    • Gui J, Li H. Threshold gradient descent method for censored data regression with applications in pharmacogenomics. Proceedings of Pacific Symposium on Biocomputing 2005, 10:272-283.
    • (2005) Proceedings of Pacific Symposium on Biocomputing , vol.10 , pp. 272-283
    • Gui, J.1    Li, H.2
  • 37
    • 60549109896 scopus 로고    scopus 로고
    • Regularized gene selection in cancer microarray meta-analysis
    • 10.1186/1471-2105-10-1, 2631520, 19118496
    • Ma S, Huang J. Regularized gene selection in cancer microarray meta-analysis. BMC Bioinformatics 2009, 10:1. 10.1186/1471-2105-10-1, 2631520, 19118496.
    • (2009) BMC Bioinformatics , vol.10 , pp. 1
    • Ma, S.1    Huang, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.