Gene cloning, expression and characterization of an α-galactosidase from Pedobacter nyackensis MJ11 CGMCC 2503 with potential as an aquatic feed additive

World Journal of Microbiology and Biotechnology

Volumn 25, Issue 9, 2009, Pages 1633-1642

  Liu, Xiaodan ^a,b   Meng, Kun ^a   Wang, Yaru ^a   Shi, Pengjun ^a   Yuan, Tiezheng ^a   Yang, Peilong ^a   Luo, Huiying ^a   Bai, Yingguo ^a   Yao, Bin ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

^b NORTHEAST AGRICULTURAL UNIVERSITY   (China)

Author keywords

Galactosidase; Cloning; Expression; Pedobacter nyackensis

Indexed keywords

AMINO ACID SEQUENCE; FEED ADDITIVES; FRESHWATER FISHES; GALACTOSIDASES; GENE CLONING; GLYCOSIDE HYDROLASES; OPTIMAL ACTIVITY; OPTIMUM TEMPERATURE; STACHYOSE; SUBSTRATE SPECIFICITY;

AGRICULTURE; AMINATION; AMINES; AMINO ACIDS; AQUACULTURE; CLONING; ENCODING (SYMBOLS); ENZYME ACTIVITY; ESCHERICHIA COLI; NUCLEIC ACIDS; ORGANIC ACIDS; SUGARS;

GENE ENCODING;

ESCHERICHIA COLI; PEDOBACTER;

EID: 71349087575     PISSN: 09593993     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11274-009-0057-8     Document Type: Article

References (44)

1. Ademark P, Larsson M, Tjerneld F, Stalbrand H (2001) Multiple α-galactosidases from Aspergillus niger: purification, characterization and substrate specificities. Enzyme Microb Technol 29: 441-448. doi: 10. 1016/S0141-0229(01)00415-X.
2. Akiyama DM (1991) The use of soy products and other plant protein supplements in aquaculture feeds. ASA Tech Bull 27: 1-18.
3. Bentahir M, Feller G, Aittaleb M, Lamotte-Brasseur J, Himri T, Chessa JP, Gerday C (2000) Structural, kinetic, and calorimetric characterization of the cold-active phosphoglycerate kinase from the antarctic Pseudomonas sp. TACII18. J Biol Chem 275: 11147-11153. doi: 10. 1074/jbc. 275. 15. 11147.
4. Bishop DF, Calhoun DH, Berntein HS, Hantzopoulos P, Quinn M, Desnick RJ (1986) Human α-galctosidase A: Nucleotide sequence of a cDNA clone encoding the mature enzyme. Proc Natl Acad Sci USA 83: 4859-4863. doi: 10. 1073/pnas. 83. 13. 4859.
5. Brouns SJJ, Smits N, Wu H, Snijders APL, Wright PC, de Vos WM, van der Oost J (2006) Identification of a novel α-galactosidase from the hyperthermophilic archaeon sulfolobus solfataricus. J Bacteriol 188: 2392-2399. doi: 10. 1128/JB. 188. 7. 2392-2399. 2006.
6. Cao Y, Yang P, Shi P, Wang Y, Luo H, Meng K, Zhang Z, Wu N, Yao B, Fan Y (2007) Purification and characterization of a novel protease-resistant α-galactosidase from Rhizopus sp. F78 ACCC 30795. Enzyme Microb Technol 41: 835-841. doi: 10. 1016/j. enzmictec. 2007. 07. 005.
7. Cao Y, Huang H, Meng K, Yang P, Shi P, Wang Y, Luo H, Zhang Z, Wu N, Yao B (2008) Cloning and functional expression of an alpha-galactosidase from Yersinia pestis biovar Microtus str 91001. Biosci Biotechnol Biochem 72: 2203-2205. doi: 10. 1271/bbb. 80145.
8. Chrost B, Kolukisaoglu U, Schulz B, Krupinska K (2007) An α-galactosidase with an essential function during leaf development. Planta 225: 311-320. doi: 10. 1007/s00425-006-0350-9.
9. Clarke JH, Davidson K, Rixon JE, Halstead JR, Fransen MP, Gilbert HJ, Hazlewood GP (2000) A comparison of enzyme-aided bleaching of softwood paper pulp using combinations of xylanase, mannanase and α-galactosidase. Appl Microbiol Biotechnol 53: 661-667. doi: 10. 1007/s002530000344.
10. Coombs J, Brenchley JE (2001) Characterization of two new glycosyl hydrolases from lactic acid bacterium Carnobacterium piscicola strain BA. Appl Environ Microbiol 67: 5094-5099. doi: 10. 1128/AEM. 67. 11. 5094-5099. 2001.
11. Deguara S, Jauncey K, Feord J, López J (1999) Growth and feed utilization of gilthead sea bream, Sparus aurata, fed diets with supplementary enzymes. In: Brufau J, Tacon A (eds) Feed manufacturing in the Mediterranean region: Recent advances in research and technology. CIHEAM-IAMZ, Zaragoza, pp 195-215.
12. den Herder IF, Rosell AM, van Zuilen CM, Punt PJ, van den Hondel CA (1992) Cloning and expression of a member of Aspergillus niger gene family encoding α-galactosidase. Mol Gen Genet 233: 404-410.
13. Dey PM, Patel S, Brownleader MD (1993) Induction of alpha-galactosidase in Penicillium ochrochloron by guar (Cyamopsis tetragonobola) gum. Biotechnol Appl Biochem 17: 361-371.
14. Eneyskaya EV, Kulminskaya AA, Savel'ev AN, Savel'eva NV, Shabalin KA, Neustroev KN (1999) Acid protease from Trichoderma reesei: limited proteolysis of fungal carbohydrases. Appl Microbiol Biotechnol 52: 226-231. doi: 10. 1007/s002530051513.
15. Fridjonsson O, Watzlawick H, Gehweiler A, Rohrhirsch T, Mattes R (1999) Cloning of the gene encoding a novel thermostable α-galactosidase from thermus brockianus ITI360. Appl Environ Microbiol 65: 3955-3963.
16. Gao Z, Schaffer AA (1999) A novel alkaline α-galactosidase from melon fruit with a substrate preference for raffinose. Plant Physiol 119: 979-987. doi: 10. 1104/pp. 119. 3. 979.
17. Garro MS, de Valdez GF, Oliver G, de Giori GS (1996) Purification of α-galactosidase from Lactobacillus fermentum. J Biotechnol 45: 103-109. doi: 10. 1016/0168-1656(95)00149-2.
18. Hoyoux A, Jennes I, Dubois P, Genicot S, Dubail F, Francois JM, Baise E, Feller G, Gerday C (2001) Cold-Adapted β-Galactosidase from the Antarctic Psychrophile Pseudoalteromonas haloplanktis. Appl Environ Microbiol 67: 1529-1535. doi: 10. 1128/AEM. 67. 4. 1529-1535. 2001.
19. Huang H, Shao N, Wang Y, Luo H, Yang P, Zhou Z, Zhan Z, Yao B (2009) A novel beta-propeller phytase from Pedobacter nyackensis MJ11 CGMCC 2503 with potential as an aquatic feed additive. Appl Microbiol Biotechnol 83: 249-259. doi: 10. 1007/s00253-008-1835-1.
20. Jeonga DW, Leeb JH, Kimc KH, Leea HJ (2006) A food-grade expression/secretion vector for Lactococcus lactis that uses an α-galactosidase gene as a selection marker. Food Microbiol 23: 468-475. doi: 10. 1016/j. fm. 2005. 06. 003.
21. Khawar SS, Ricardo C (2006) Cold-Adapted Enzymes. Annu Rev Biochem 75: 403-433. doi: 10. 1146/annurev. biochem. 75. 103004. 142723.
22. Kondoh K, Morisaki K, Kim W, Park G, Kaneko S, Kobayashi H (2005) Cloning and expression of the gene encoding Streptomyces coelicolor A3(2) alpha-galactosidase belonging to family 36. Biotechnol Lett 27: 641-647. doi: 10. 1007/s10529-005-3660-2.
23. LeBlanc JG, Silvestroni A, Connes C, Juillard V, de Giori GS, Piard JC (2004) Reduction of non-digestible oligosaccharides in soymilk: application of engineered lactic acid bacteria that produce α-galactosidase. Genet Mol Res 3: 432-440.
24. Leiros HK, Willassen NP, Smalas AO (1999) Residue determinants and sequence analysis of cold-adapted trypsins. Extremophiles 3: 205-219. doi: 10. 1007/s007920050118.
25. Li S, Kim WD, Kaneko S, Prema PA, Nakajima M, Kobayashi H (2007) Expression of Rice (Oryza sativa L. var. Nipponbare) α-galactosidase genes in Escherichia coli and characterization. Biosci Biotechnol Biochem 71: 520-526. doi: 10. 1271/bbb. 60554.
26. Linden JC (1982) Immobilized α-D-galactosidase in the sugar beet industry. Enzyme Microb Technol 4: 130-136. doi: 10. 1016/0141-0229(82)90103-X.
27. Lonhienne T, Zoidakis J, Vorgias CE, Feller G, Gerday C, Bouriotis V (2001) Modular structure, local flexibility and cold-activity of a novel chitobiase from a psychrophilic antarctic bacterium. J Mol Biol 310: 291-297. doi: 10. 1006/jmbi. 2001. 4774.
28. Makowski K, Białkowska A, Olczak J, Kur J, Turkiewicz M (2009) Antarctic, cold-adapted-galactosidase of Pseudoalteromonas sp. 22b as an effective tool for alkyl galactopyranosides synthesis. Enzyme Microb Technol 44: 59-64. doi: 10. 1016/j. enzmictec. 2008. 09. 010.
29. Mi S, Meng K, Wang Y, Bai Y, Yuan T, Luo H, Yao B (2007) Molecular cloning and characterization of a novel α-galactosidase gene from Penicillium sp. F63 CGMCC 1669 and expression in Pichia pastoris. Enzyme Microb Technol 40: 1373-1380. doi: 10. 1016/j. enzmictec. 2006. 10. 017.
30. Mulimani VH, Ramalingam (1995) Enzymic hydrolysis of raffinose and stachyose in soymilk by alpha-galactosidase from Gibberella fujikuroi. Biochem Mol Biol Int 36: 897-905.
31. Russell RJ, Gerike U, Danson MJ, Hough DW, Taylor GL (1998) Structural adaptations of the cold-active citrate synthase from an Antarctic bacterium. Structure 6: 351-361. doi: 10. 1016/S0969-2126(98)00037-9.
32. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, New York.
33. Saunders NF, Thomas T, Curmi PM, Mattick JS, Kuczek E, Slade R, Davis J, Franzmann PD, Boone D, Rusterholtz K, Feldman R, Gates C, Bench S, Sowers K, Kadner K, Aerts A, Dehal P, Detter C, Glavina T, Lucas S, Richardson P, Larimer F, Hauser L, Land M, Cavicchioli R (2003) Mechanisms of thermal adaptation revealed from the genomes of the Antarctic Archaea Methanogenium frigidum and Methanococcoides burtonii. Genome Res 13: 1580-1588. doi: 10. 1101/gr. 1180903.
34. Schiffmann R, Murray GJ, Treco DP, Daniel M, Sellos-Moura M, Myers MJ, Quirk M, Zirzow GC, Borowski M, Loveday K, Anderson T, Gillespie F, Oliver KL, Jeffries NO, Doo E, Liang TJ, Kreps C, Gunter K, Frei K, Crutchfield K, Selden RF, Brady RO (2000) Infusion of α-galactosidase A reduces tissue globotriaosylceramide storage in patients with Fabry disease. Proc Natl Acad Sci USA 97: 365-370. doi: 10. 1073/pnas. 97. 1. 365.
35. Silvestroni A, Connes C, Sesma F, De Giori SG, Piard JC (2002) Characterization of the melA locus for α-galactosidase in Lactobacillus plantarum. Appl Environ Microbiol 68: 5464-5471. doi: 10. 1128/AEM. 68. 11. 5464-5471. 2002.
36. Sheridan PP, Panasik N, Coombs JM, Brenchley JE (2000) Approaches for deciphering the structural basis of low temperature enzyme activity. Biochim Biophys Acta 1543: 417-433. doi: 10. 1016/S0167-4838(00)00237-5.
37. Smalas AO, Leiros HK, Os V, Willassen NP (2000) Cold adapted enzymes. Biotechnol Annu Rev 6: 1-57. doi: 10. 1016/S1387-2656(00)06018-X.
38. Soh C, Ali ZM, Lazan H (2006) Characterisation of an α-galactosidase with potential relevance to ripening related texture changes. Phytochemistry 67: 242-254. doi: 10. 1016/j. phytochem. 2005. 09. 032.
39. Somiari RI, Balogh E (1993) Effect of soaking, cooking and crude α-galactosidase treatment on the oligosaccharide content of red gram flour. Sci Food Agric 61: 339-343. doi: 10. 1002/jsfa. 2740610308.
40. Suryani, Kimura T, Sakka K, Ohmiya K (2003) Cloning, sequencing, and expression of the gene encoding the Clostridium stercorarium α-galactosidase Aga36A in Escherichia coli. Biosci Biotechnol Biochem 67: 2160-2166. doi: 10. 1271/bbb. 67. 2160.
41. Thomas T, Cavicchioli R (1998) Archaeal cold-adapted proteins: structural and evolutionary analysis of the elongation factor 2 proteins from psychrophilic, mesophilic and thermophilic methanogens. FEBS Lett 439: 281-286. doi: 10. 1016/S0014-5793(98)01375-1.
42. Tinder P (1969) Determination of blood glucose using an oxidase peroxidase system with a non-carcinogenic chromogen. J Clin Pathol 22: 158-161. doi: 10. 1136/jcp. 22. 2. 158.
43. Tsuboi K (2007) Enzyme replacement therapy in patients with Fabry's disease. J Int Med Res 35: 574-581.
44. Zhang Y, Gong F, Bao G, Gao H, Ji S, Tan Y, Li S, Li L, Wang Y, Xu H, Xu L, Tian S, Zhang Z, Lv Q, Qiu Y, Bai J, Chen J (2007) B to O erythrocyte conversion by the recombinant α-galactosidase. Chin Med J 120: 1145-1150.