Direct Fe2+ sensing by iron-responsive messenger RNA·repressor complexes weakens binding

Journal of Biological Chemistry

Volumn 284, Issue 44, 2009, Pages 30122-30128

  Khan, Mateen A ^a   Walden, William E ^b   Goss, Dixie J ^a,e   Theil, Elizabeth C ^c,d,e  

^a CITY UNIVERSITY OF NEW YORK   (United States)

^b UNIVERSITY OF ILLINOIS AT CHICAGO   (United States)

^c CHILDREN S HOSPITAL OAKLAND RESEARCH INSTITUTE   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e NONE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEX STABILITY; CONCENTRATION RANGES; DEGRADATIVE PATHWAYS; ETHIDIUM BROMIDE; IN-VIVO; MESSENGER RNA; MITOCHONDRIAL ACONITASE; REGULATORY PROTEIN; REGULATORY STRUCTURE; RNA STRUCTURES; UNTRANSLATED REGIONS;

IRON COMPOUNDS; LAWS AND LEGISLATION; MANGANESE; MANGANESE COMPOUNDS; METAL IONS; NUCLEIC ACIDS; TRACE ANALYSIS;

RNA;

ACONITATE HYDRATASE; ETHIDIUM BROMIDE; FERRITIN; FERROUS ION; IRON REGULATORY FACTOR; MAGNESIUM; MANGANESE; METAL ION; OXYGEN; IRON; MESSENGER RNA; REPRESSOR PROTEIN;

5' UNTRANSLATED REGION; ARTICLE; CONTROLLED STUDY; HUMAN; IN VIVO STUDY; IRON BINDING CAPACITY; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN FUNCTION; RNA CONFORMATION; ANIMAL; DNA RESPONSIVE ELEMENT; FROG; GENETICS; METABOLISM; RABBIT; REGULATORY SEQUENCE;

ANIMALS; IRON; MAGNESIUM; MANGANESE; RABBITS; RANIDAE; REGULATORY SEQUENCES, NUCLEIC ACID; REPRESSOR PROTEINS; RESPONSE ELEMENTS; RNA, MESSENGER;

EID: 71049158356     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M109.041061     Document Type: Article

References (46)

1. Wallander, M. L., Leibold, E. A., and Eisenstein, R. S. (2006) Biochim. Biophys. Acta 1763, 668-689
2. Rouault, T. A. (2006) Nat. Chem. Biol. 2, 406-414
3. Leipuviene, R., and Theil, E. C. (2007) Cell. Mol. Life Sci. 64, 2945-2955
4. Muckenthaler, M. U., Galy, B., and Hentze, M. W. (2008) Annu. Rev. Nutr. 28, 197-213
5. Zähringer, J., Baliga, B. S., and Munro, H. N. (1976) Proc. Natl. Acad. Sci. U.S.A. 73, 857-861
6. Melefors, O., Goossen, B., Johansson, H. E., Stripecke, R., Gray, N. K., and Hentze, M. W. (1993) J. Biol. Chem. 268, 5974-5978
7. Hentze, M. W., Muckenthaler, M. U., and Andrews, N. C. (2004) Cell 117, 285-297
8. Sierzputowska-Gracz, H., McKenzie, R. A., and Theil, E. C. (1995) Nucleic Acids Res. 23, 146-153
9. Laing, L. G., and Hall, K. B. (1996) Biochemistry 35, 13586-13596
10. Addess, K. J., Basilion, J. P., Klausner, R. D., Rouault, T. A., and Pardi, A. (1997) J. Mol. Biol. 274, 72-83
11. Gdaniec, Z., Sierzputowska-Gracz, H., and Theil, E. C. (1998) Biochemistry 37, 1505-1512
12. Ke, Y., Sierzputowska-Gracz, H., Gdaniec, Z., and Theil, E. C. (2000) Biochemistry 39, 6235-6242
13. Walden, W. E., Selezneva, A. I., Dupuy, J., Volbeda, A., Fontecilla-Camps, J. C., Theil, E. C., and Volz, K. (2006) Science 314, 1903-1908
14. Guo, B., Yu, Y., and Leibold, E. A. (1994) J. Biol. Chem. 269, 24252-24260
15. Clarke, S. L., Vasanthakumar, A., Anderson, S. A., Pondarré, C., Koh, C. M., Deck, K. M., Pitula, J. S., Epstein, C. J., Fleming, M. D., and Eisenstein, R. S. (2006) EMBO J. 25, 544-553
16. Deck, K. M., Vasanthakumar, A., Anderson, S. A., Goforth, J. B., Kennedy, M. C., Antholine, W. E., and Eisenstein, R. S. (2009) J. Biol. Chem. 284, 12701-12709
17. Shenvi, C. L., Dong, K. C., Friedman, E. M., Hanson, J. A., and Cate, J. H. (2005) RNA 11, 1898-1908
18. Wang, B., Wilkinson, K. A., and Weeks, K. M. (2008) Biochemistry 47, 3454-3461
19. Oshikane, H., Sheppard, K., Fukai, S., Nakamura, Y., Ishitani, R., Numata, T., Sherrer, R. L., Feng, L., Schmitt, E., Panvert, M., Blanquet, S., Mechulam, Y., Söll, D., and Nureki, O. (2006) Science 312, 1950-1954
20. Rangan, P., Masquida, B., Westhof, E., and Woodson, S. A. (2004) J. Mol. Biol. 339, 41-51
21. Vicens, Q., Paukstelis, P. J., Westhof, E., Lambowitz, A. M., and Cech, T. R. (2008) RNA 14, 2013-2029
22. Vogt, M., Lahiri, S., Hoogstraten, C. G., Britt, R. D., and DeRose, V. J. (2006) J. Am. Chem. Soc. 128, 16764-16770
23. Nelson, J. A., and Uhlenbeck, O. C. (2008) RNA 14, 605-615
24. Lipfert, J., Das, R., Chu, V. B., Kudaravalli, M., Boyd, N., Herschlag, D., and Doniach, S. (2007) J. Mol. Biol. 365, 1393-1406
25. Coppins, R. L., Hall, K. B., and Groisman, E. A. (2007) Curr. Opin. Microbiol. 10, 176-181
26. Martick, M., Horan, L. H., Noller, H. F., and Scott, W. G. (2008) Nature 454, 899-902
27. Wang, Y. H., Sczekan, S. R., and Theil, E. C. (1990) Nucleic Acids Res. 18, 4463-4468
28. Harrell, C. M., McKenzie, A. R., Patino, M. M., Walden, W. E., and Theil, E. C. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 4166-4170
29. Erlitzki, R., Long, J. C., and Theil, E. C. (2002) J. Biol. Chem. 277, 42579-42587
30. Dix, D. J., Lin, P. N., McKenzie, A. R., Walden, W. E., and Theil, E. C. (1993) J. Mol. Biol. 231, 230-240
31. Ke, Y., Wu, J., Leibold, E. A., Walden, W. E., and Theil, E. C. (1998) J. Biol. Chem. 273, 23637-23640
32. Chen, O. S., Schalinske, K. L., and Eisenstein, R. S. (1997) J. Nutr. 127, 238-248
33. Butt, J., Kim, H. Y., Basilion, J. P., Cohen, S., Iwai, K., Philpott, C. C., Altschul, S., Klausner, R. D., and Rouault, T. A. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 4345-4349
34. Phillips, J. D., Guo, B., Yu, Y., Brown, F. M., and Leibold, E. A. (1996) Biochemistry 35, 15704-15714
35. Thorp, H. H., McKenzie, R. A., Lin, P. N., Walden, W. E., and Theil, E. C. (1996) Inorg. Chem. 35, 2773-2779
36. Lill, R., and Mühlenhoff, U. (2008) Annu. Rev. Biochem. 77, 669-700
37. Dickey, L. F., Wang, Y. H., Shull, G. E., Wortman, I. A., 3rd, and Theil, E. C. (1988) J. Biol. Chem. 263, 3071-3074
38. Selezneva, A. I., Cavigiolio, G., Theil, E. C., Walden, W. E., and Volz, K. (2006) Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 62, 249-252
39. Piccinelli, P., and Samuelsson, T. (2007) RNA 13, 952-966
40. Hintze, K. J., and Theil, E. C. (2005) Proc. Natl. Acad. Sci. U.S.A. 102, 15048-15052
41. Hintze, K. J., Katoh, Y., Igarashi, K., and Theil, E. C. (2007) J. Biol. Chem. 282, 34365-34371
42. Kim, H. Y., LaVaute, T., Iwai, K., Klausner, R. D., and Rouault, T. A. (1996) J. Biol. Chem. 271, 24226-24230
43. Gunshin, H., Allerson, C. R., Polycarpou-Schwarz, M., Rofts, A., Rogers, J. T., Kishi, F., Hentze, M. W., Rouault, T. A., Andrews, N. C., and Hediger, M. A. (2001) FEBS Lett. 509, 309-316
44. Theil, E. C., and Eisenstein, R. S. (2000) J. Biol. Chem. 275, 40659-40662
45. Khan, M. A., Miyoshi, H., Gallie, D. R., and Goss, D. J. (2008) J. Biol. Chem. 283, 1340-1349
46. Firpo, M. A., Connelly, M. B., Goss, D. J., and Dahlberg, A. E. (1996) J. Biol. Chem. 271, 4693-4698