Proteomic analysis of the rice seed for quality improvement

Plant Breeding

Volumn 128, Issue 6, 2009, Pages 541-550

  Kim, Y J ^a   Choi, S H ^a   Park, B S ^a   Song, J T ^b   Kim, M C ^c   Koh, H J ^a   Seo, H S ^a  

^a Seoul National University   (South Korea)

^b Kyungpook National University   (South Korea)

^c Gyeongsang National University   (South Korea)

Author keywords

Dobong; Endosperm; Flavour; Gopum; Protein; Quality

Indexed keywords

EID: 70649104763     PISSN: 01799541     EISSN: 14390523     Source Type: Journal    
DOI: 10.1111/j.1439-0523.2009.01693.x     Document Type: Article

References (52)

1. Altenbach, S. B., and. S. H. Howell, 1981: Identification of a satellite RNA associated with turnip crinkle virus. Virology. 112, 25-33.
2. Bradford, M. M., 1976: A rapid and sensitive method for the quantitation of microgram, quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72, 248-254.
3. Cagampang, G. B., C. M. Perez, and B. O. Juliano, 1973: A gel consistency test for eating quality of rice. J. Sci. Food Agric. 24, 1589-1594.
4. Cao, W.-H., J. Liu, X.-J. He, R.-L. Mu, H.-L. Zhou, S.-Y. Chen, and J.-S. Zhang, 2007: Modulation of ethylene responses affects plant salt-stress responses. Plant Physiol. 143, 707-719. (Pubitemid 46940964)
5. Chrastil, J., 1994: Stickiness of oryzenin and starch mixtures from preharvest and postharvest rice grains. J. Agric. Food Chem. 42, 2147-2151.
6. Dixon, R. A., 2001: Natural products and plant disease resistance. Nature 411, 843-847. (Pubitemid 32588112)
7. Duan, M., and S. S. Sun, 2005: Profiling the expression of genes controlling rice grain quality. Plant Mol. Biol. 59, 165-178.
8. Epshtein, V., A. S. Mironov, and E. Nudler, 2003: The riboswitch-mediated control of sulfur metabolism in bacteria. Proc. Natl. Acad. Sci. USA 100, 5052-5056.
9. Fontecave, M., M. Atta, and E. Mulliez, 2004: S-adenosylmethionine: nothing goes to waste. Trends Biochem. Sci. 29, 243-249.
10. Freist, W., D. T. Logan, and D. H. Gauss, 1996: Glycyl-tRNA synthetase. Biol. Chem. Hoppe Seyler 377, 343-356.
11. Fresco, L., 2005: 'Rice is life'. J. Food Compost. Anal. 18, 249-253.
12. Galston, A. W., 1983: Polyamines as modulators of plant development. Bioscience 33, 382-388.
13. Cranell, A., M. Cercos, and J. Carbonell, 1998: Plant cysteine proteinases in germination and senescence. In: A. J. Barrett (eds), The Handbook of Proteolytic Enzymes, 578-583. Academic Press, San Diego, CA.
14. Hamaker, B. R., and V. K. Griffin, 1993: Effect of disulfide bond-containing protein on rice starch gelatinization and pasting. Cereal Chem. 70, 377-380.
15. Hartman, L., and R. C. Lago, 1.976: The composition of lipids from rice hulls and from the surface of rice caryopsis. J. Sci. Food Agric. 27, 939-942.
16. Hashimoto, M., L. Kisseleva, S. Sawa, T. Furukawa, S. Komatsu, and T. Koshiba, 2004: A novel rice PR10 Protein, RSOsPR10, specifically induced in roots by biotic and abiotic stresses, possibly via the jasmonic acid signaling pathway. Plant Cell Physiol. 45, 550-559. (Pubitemid 38791238)
17. Hihara,Y.,M.Umeda,C.Hara,K.Toriyama,andH.Uchimiya,1994: Nucleotidesequenceofariceacidicribosomal.phosphoproteinP0cDNA.PlantPhysiol.105, 753-754.(Pubitemid24986334)
18. Ibrahim, R. K, A. Bruneau, and B. Bantignies, 1998: Plant O-methyltransferases: molecular analysis, common signature and classification. Plant Mol Biol. 36, 1-10.
19. Juliano, B. O., 1993: Rice in human nutrition. FAO Food and Nutrition Series FAO of the United Nations, Vol.26. Publication Division, Rome 35-84.
20. Juliano, B. O., and C. M. Perez, 1983: Major factors affecting cooked milled rice hardness and cooking time. J. Texture Stud. 14, 235-243.
21. Jwa, N. -S., G. Kumar Agrawal, R. Rakwal, C. -H. Park, and V. Prasad Agrawal, 2001: Molecular cloning and characterization of a novel, jasmonate inducible pathogenesis-related class 10 Protein Gene, J1OsPR10, from rice (Oryza sativa L.) seedling leaves. Biochem. Biophys. Res. Commun. 286, 973-983.
22. Khush, G., 2005: What it will take to feed 5.0 billion rice consumers in 2030. Plant Mol. Biol. 59, 1-6.
23. Kim, S. T., K. S. Cho, S. G. Kim, S. Y. Kang, and K. Y. Kang, 2003: A rice isoflavone reductase-like gene, OsIRL, is induced by rice blast fungal elicitor. Mol. Cells 16, 224-231.
24. Kobayashi, A., and. K. Tomita, 2008: QTL detection for stickiness of cooked rice using recombinant inbred lines derived from crosses between japónica rice cultivars. Breeding Sci. 58, 419-426.
25. Lestari, P., T. H. Ham, H. H. Lee, M. O. Woo, W. Jiang, S. H. Chu, S. W. Kwon, K. Ma, J. H. Lee, Y. Cho, and H. J. Koh, 2009: PCR marker-based evaluation of the eating quality of Japonica Rice (Oryza sativa L.). J. Agri. Food. 57, 2754-2762.
26. Li,X.,Y.Wu,D.Z.Zhang,J.W.Gillikin,R.S.Boston,V.R.Franceschi,andT.W.Okita, 1993:Riceprolamineproteinbodybiogenesis:aBiP-mediatedprocess.Science262, 1054-1056.(Pubitemid24035044)
27. Li, L., H. Cheng, J. Gai, and D. Yu, 2007: Genome-wide identification and characterization of putative cytochrome P450 genes in the model legume Medicago truncatula. Planta 226, 109-123. (Pubitemid 46763831)
28. Marshall, S. D., J. J. Putterill, K. M. Plummer, and R. D. Newcomb, 2003: The carboxylesterase gene family from Arabidopsis thaliana. J. Mol. Evol. 57, 487-500.
29. Martin, M., and M. A. Fitzgerald, 2002: Proteins in rice grains influence cooking properties!. J Cereal Sci. 36, 285-294. (Pubitemid 35212066)
30. Matveev, Y. I., V. Y. Grinberg, and V. B. Tolstoguzov, 2000: The plasticizing effect of water on proteins, polysaccharides and their mixtures. Glassy state of biopolymers, food and seeds. Food Hydrocolloids 14, 425-437.
31. McGee, J. D., J. E. Hamer, and T. K. Hodges, 2001: Characterization of a PR-10 pathogenesis-related gene family induced in rice during infection with Magnaporthe grisea. Mol. Plant Microbe Interact. 14, 877-886.
32. Muench, D. G., Y. Wu, Y. Zhang, X. Li, R. S. Boston, and T. W. Okita, 1997: Molecular cloning, expression and subcellular localization of a BiP homolog from rice endosperm tissue. Plant Cell Physiol. 38, 404-412.
33. Müntz, K, 1998: Deposition of storage proteins. Plant Mol. Biol. 38, 77-99.
34. Nelson, D. R., L. Koymans, T. Kamataki, J. J. Stegeman, R. Feyereisen, D. J. Waxman, M. R. Waterman, O. Gotoh, M. J. Coon, R. W. Estabrook, I. C Gunsalus, and D. W. Nebert, 1996: P450 superfamily: update on new sequences, gene mapping, accession numbers and nomenclature. Pharmacogenetics 6, 1-42.
35. Oakley, B. R., D. R. Kirsch, and N. R. Morris, 1980: A. simplified ultrasensitive silver stain for detecting proteins in polyacrylamide gels. Anal. Biochem. 105, 361-363.
36. Osborne, T. B., 1924: The Vegetable Proteins. Longmans, Green, London.
37. Perez, C M., A. A. Perdon, A. P. Resurreccion, R. M. Villareal, and B. O. Juliano, 1975: Enzymes of carbohydrate metabolism in the developing rice grain. Plant Physiol. 56, 579-583.
38. Sarowar, S., H. W. Oh, H. S. Cho, K. -H. Baek, E. S. Seong, Y. H. Joung, G. J. Choi, S. Lee, and D. Choi, 2007: Capsicum annuum CCR4-associated factor CaCAF1 is necessary for plant development and defence response. Plant J. 51, 792-802.
39. Shevchenko, A., M. Wilm, O. Vorm, and M. Mann, 1996: Mass spectrometric sequencing of proteins from, silver-stained Polyacryl-amide gels. Anal. Chem. 68, 850-858.
40. Shewry, P. R., J. A. Napier, and A. S. Tatham, 1995: Seed storage proteins: structures and biosynthesis. Plant Cell 7, 945-956.
41. Shigeoka, S., T. Ishikawa, M. Tamoi, Y. Miyagawa, T. Takeda, Y. Yabuta, and K. Yoshimura, 2002: Regulation and function of ascorbate peroxidase isoenzymes. J. Exp. Bot. 53, 13051319.
42. Shimada,T.,N.Hiraiwa,M.Nishimura,andI.Hara-Nishimura,1994: Vacuolarprocessingenzymeofsoybeanthatconvertsproproteins- thecorrespondingmatureforms.PlantCellPhysiol.35,713-718.(Pubitemid2112671)
43. Shu, X. -L., S. -Q. Shen, J. -S. Bao, D. -X. Wu, Y. Nakamura, and Q. -Y. Shu, 2006: Molecular and biochemical analysis of the gelatinization temperature characteristics of rice (Oryza sativa L.) Starch granules. J. Cereal Sci. 44, 40-48.
44. Takemoto, Y., S. J. Coughlan, T. W. Okita, H. Satoh, M. Ogawa, and T. Kumamaru, 2002: The rice mutant esp2 greatly accumulates the glutelin precursor and deletes the protein disulfide isomerase. Plant Physiol. 128, 1212-1222.
45. TakeuchiY., K. Hori, K. Suzuki, Y. Nonoue, Y. Takemoto-Kuno, H. Maeda, H. Sato, H. Hirabayashi, H. Ohta, T. Ishii, H. Kato, H. Němoto, T. Imbe, K. Ohtsubo, M. Yano, and I. Ando, 2008: Major QTLs for eating quality of an elite Japanese rice cultivar, Koshihikari, on the short arm, of chromosome 3. Breeding Sci. 58, 437-445.
46. TakuyaW., T. Ogata, M. Tsubone, Y. Uchimura, and Y. Matsue, 2008: Mapping of QTLs for eating quality and physicochemical properties of the japonica rice 'Koshihikari'. Breeding Sci, 58, 427-435.
47. Toyooka, K., T. Okamoto, and T. Minamikawa, 2000: Mass transport of proform of a KDEL-tailed cysteine proteinase (SH-EP) to protein storage vacuoles by endoplasmic reticulum-derived vesicle is involved in protein mobilization in germinating seeds. J. Cell Biol. 148, 453-464. (Pubitemid 30682559)
48. Waiden, A. R., C. Walter, and R. C. Gardner, 1999: Genes expressed in Pinus radiata male cones include homologs to anther-specific and pathogenesis response genes. Plant Physiol. 121, 1103-1116.
49. Wang, Y., Y. Xue, and J. Li, 2005: Towards molecular breeding and improvement of rice in China. Trends Plant Sci. 10, 610-614. (Pubitemid 41714017)
50. Wang, J., X. Wan, H. Li, W. H. Pfeiffer, J. Crouch, and J. Wan, 2007: Application of identified QTL-marker associations in rice quality improvement through a design-breeding approach. Theor. Appl. Genet. 115, 87-100.
51. Yanase, H., K. Ohtsubo, K. Hashimoto, H. Sato, and T. Teranishi, 1984: Correlation between protein contents of brown rice and textural parameters of cooked rice and cooking quality of rice. Rep. Nat. Food Res. Inst. 45, 118-122.
52. Zheng, X., J. G. Wu, X. Y. Lou, H. M. Xu, and C. H. Shi, 2008: The QTL analysis on maternal and endosperm, genome and their environmental interactions for characters of cooking quality in rice (Oryza sativa L). Theor. Appl. Genet. 116, 335-342.