QTL detection for stickiness of cooked rice using recombinant inbred lines derived from crosses between japonica rice cultivars

Breeding Science

Volumn 58, Issue 4, 2008, Pages 419-426

  Kobayashi, Asako ^a   Tomita, Katsura ^a  

^a Fukui Agricultural Experiment Station   (Japan)

Author keywords

Amylographic characteristics; Amylose content; Oryza sativa L.; QTL analysis; Recombinant inbred lines; Stickiness of cooked rice

Indexed keywords

JAPONICA; ORYZA SATIVA;

EID: 57649136474     PISSN: 13447610     EISSN: 13473735     Source Type: Journal    
DOI: 10.1270/jsbbs.58.419     Document Type: Article

References (32)

1. Asaoka, M., K. Okuno and H. Fuwa (1985) Effect of environmental temperature at the milky stage on amylose content and fine structure of amylopectin of waxy and non waxy endosperm starches of rice (Oryza sativa L.). Agric. Biol. Chem. 49: 373-379.
2. Bao, J.S., H. Corke and M. Sun (2006) Microsatellites, single nucleotide polymorphisms and a sequence tagged site in starch-synthesizing genes in relation to starch physicochemical properties in nonwaxy rice (Oryza sativa L.). Theor. Appl. Genet. 113: 1185-1196.
3. Bligh, H.F.J., R.I. Till and C.A. Jones (1995) A microsatellite sequence closely linked to the Waxy gene of Oryza sativa. Euphytica 86: 83-85.
4. Fukui, K. and A. Kobayashi (1996) Evaluation of eating quality by sensory test. In: Yamamoto, R., N. Horisue and R. Ikeda (eds.) Rice Breeding Manual, Yokendo Ltd., Tokyo, pp. 74-76.
5. Han, Y.P., M.L. Xu, C.J. Yan, X.L. Chen and M.H. Gu (2004) Effect of wx mutation on starch physical-chemical properties in rice. Chinese Journal of Rice Sci. 18: 125-129.
6. Horiuchi, H., K. Tomita, K. Terada, I. Tanaka, A. Kobayashi, T. Minobe, H. Furuta, A. Yamamoto, H. Shinoyama, I. Ikeda and M. Tanoi (2004) A New rice cultivar with excellent eating quality, "Sakihikari". Breed. Res. 6 (Suppl. 1): 308.
7. Inatsu, O. (1988) Studies on improving the eating quality of Hokkaido rice. Rep. of Hokkaido Prefect. Agric. Exp. Stn. 66: 3-19.
8. Ishima, T., H. Taira, H. Taira, K. Mikoshiba and S. Yoshikawa (1974) Effect of nitrogenous fertilizer application and protein content in milled rice of organoleptic quality of cooked rice. Rept. Nat. Food Res. Inst. 29: 9-15.
9. Jiang, H., W. Dian and P. Wu (2003) Effect of high temperature on fine structure of amylopectin in rice endosperm by reducing the activity of the starch branching enzyme. Phytochemistry 63: 53-59.
10. Juliano, B.O. (1971) A simplified assay for milled-rice amylose. Cereal Sci. Today 16: 334-340.
11. Kobayashi, A., G. Bao, S. Ye and K. Tomita (2007) Detection of quantitative trait loci for white-back and basal-white kernels under high temperature stress in japonica rice varieties. Breed. Sci. 57: 107-116.
12. Kobayashi, A., K. Tomita, F. Yu, Y. Takeuchi and M. Yano (2008) Verification of quantitative trait locus for stickiness of cooked rice and amylose content by developing near-isogenic lines. Breed. Sci. 58: 235-242.
13. Kuo, B.J., M.C. Hong and F.S. Thseng (2001) The relationship between the amylographic characteristics and eating quality of japonica rice in Taiwan. Plant Prod. Sci. 4: 112-117.
14. Lander, E.S., P. Green, J. Abrahamson, A. Barlow, M.J. Daly, S.E. Lincoln and L. Newburg (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
15. Li, Z., J. Wan, J. Xia and M. Yano (2003) Mapping of quantitative trait loci controlling physico-chemical properties of rice grains (Oryza sativa L.). Breed. Sci. 53: 209-215.
16. McCouch, S.R., L. Teytelman, Y. Xu, K.B. Lobos, K. Clare, M. Walton, B. Fu, R. Maghirang, Z. Li and Y. Xing (2002) Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res. 9: 199-207.
17. Murray, M.G. and W.F. Thompson (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8: 4321-4325.
18. Nishimura, M., F. Yamauchi, K. Ohuchi and K. Hamamura (1985) Evaluation of the eating quality of recent rice varieties and lines in Hokkaido. - The relation between organoleptic and physicochemical qualities of milled rice harvested in an extremely cool year and a very hot year during the summer - . Res. Bull. Hokkaido Natl. Agric. Exp. Stn. 144: 77-89.
19. Ogata, T., A. Yoshimura, Y. Matsue, H. Tsunematsu and N. Iwata (1996) QTL analysis for palatability and physicochemical properties of milled rice. Breed. Sci. 46 (Suppl. 2): 201.
20. Okadome, H. (1996) Gelatinization properties. In: Yamamoto, R., N. Horisue and R. Ikeda (eds.) Rice Breeding Mannual, Yokendo Ltd., Tokyo, pp. 88-90.
21. Oosato, K., Y. Hamachi, Y. Kawamura and Y. Matsue (1998) Reliability of sensory test for highly palatable rice cultivars. Jpn. J. Crop Sci. 67: 170-173.
22. Otsuki, H., H. Shimizu, Y. Uehara, T. Yagi, N. Ogawa, I. Ashikawa, H. Shimizu, K. Tamura, H. Ohta, K. Kuroda and Y. Fukuta (1997) QTL analysis of taste in rice. Breed. Sci. 47 (Suppl. 2): 147.
23. Sato, H., M. Katsumata and K. Okuno (2002) Molecular characterization of Wx-mq, a novel mutant gene for low-amylose content in endosperm of rice (Oryza sativa L.). Breed. Sci. 52: 131-135.
24. Suzuki, Y., H.Y. Hirano, Y. Sano, U. Matsukura, S. Kawasaki, M. Chono, S. Nakamura and H. Sato (2003) Isolation and characterization of a rice mutant with enhanced amylose content in endosperm derived from a low amylose variety "Snow Pearl". Rice Genet. Newsl. 20: 65-66.
25. Takano, K. (1997) Stickiness of rice and its evaluation method. J. of the Japanese Society of Food Engineering. 17: 17-23.
26. Takeuchi, Y., Y. Nonoue, T. Ebitani, K. Suzuki, N. Aoki, H. Sato, O.Ideta, H. Hirabayashi, M. Hirayama, H. Ohta, H. Nemoto, H.Kato, I. Ando, K. Ohtsubo, M. Yano and T. Imbe (2007) QTL detection for eating quality including glossiness, stickiness, taste and hardness of cooked rice. Breed. Sci. 57: 231-242.
27. Tanaka, I., A. Kobayashi, K. Tomita, Y. Takeuchi, M. Yamagishi, M.Yano, T. Sasaki and H. Horiuchi (2006) Detection of quantitative trait loci for stickiness and appearance based on eating quality test in japonica rice cultivar. Breed. Res. 8: 39-47.
28. Temnykh, S., G. DeClerck, A. Lukashova, L. Lipovich, S. Cartinhour and S. McCouch (2001) Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res. 11: 1441-1452.
29. Wada, T., T. Ogata, T. Masao and Y. Matsue (2007) Identification of QTLs for eating quality of cooked rice of 'Koshihikari'. Breed. Res. 9 (Suppl. 1): 181.
30. Wan, X.Y., J.M. Wan, C.C. Su, C.M. Wang, W.B. Shen, J.M. Li, H.L. Wang, L. Jiang, S.J. Liu, L.M. Chen, H. Yasui and A. Yoshimura (2004) QTL detection for eating quality of cooked rice in a population of chromosome segment substitution lines. Theor. Appl. Genet. 110: 71-79.
31. Wang, S., C.J. Basten and Z.-B. Zeng (2007) Windows QTL Cartographer 2.5. Department of Statistics, North Carolina State University, Raleigh, NC. (http://statgen.ncsu.edu/qtlcart/WQTLCart.htm)
32. Yamakawa, H., T. Hirose, M. Kuroda and T. Yamaguchi (2007) Comprehensive expression profiling of rice grain filling-related genes under high temperature using DNA microarray. Plant Physiology. 144: 258-277.