Characterization of global microRNA expression reveals oncogenic potential of miR-145 in metastatic colorectal cancer

BMC Cancer

Volumn 9, Issue , 2009, Pages 374-

  Arndt, Greg M ^a,d   Dossey, Lesley ^b   Cullen, Lara M ^a   Lai, Angela ^a   Druker, Riki ^a   Eisbacher, Michael ^a   Zhang, Chunyan ^a   Tran, Nham ^a   Fan, Hongtao ^c   Retzlaff, Kathy ^b   Bittner, Anton ^b   Raponi, Mitch ^c  

^a JOHNSON AND JOHNSON   (United States)

^b JOHNSON AND JOHNSON PHARMACEUTICAL RESEARCH AND DEVELOPMENT   (United States)

^c CENTOCOR INC   (United States)

^d CHILDREN S CANCER INSTITUTE AUSTRALIA FOR MEDICAL RESEARCH   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; MICRORNA 133A; MICRORNA 143; MICRORNA 145; UNCLASSIFIED DRUG;

ARTICLE; CANCER GROWTH; CANCER STAGING; CELL CYCLE; CELL DIFFERENTIATION; CELL GROWTH; CELL PROLIFERATION; CHROMOSOME ADDITION; CHROMOSOME LOSS; CLINICAL ARTICLE; COLORECTAL CANCER; CONTROLLED STUDY; DOWN REGULATION; GENE CLUSTER; GENE EXPRESSION PROFILING; GENE FUNCTION; HUMAN; HUMAN CELL; IN VITRO STUDY; METASTASIS POTENTIAL; PROGNOSIS; SIGNAL TRANSDUCTION; UPREGULATION;

EID: 70450260597     PISSN: None     EISSN: 14712407     Source Type: Journal    
DOI: 10.1186/1471-2407-9-374     Document Type: Article

References (43)

1. Weitz J, Koch M, Debus J, Hohler T, Galle PR, Buchler MW. Colorectal cancer. Lancet 2005, 365(9454):153-165. 10.1016/S0140-6736(05)17706-X, 15639298.
2. Jemal A, Siegel R, Ward E, Murray T, Xu J, Thun MJ. Cancer statistics, 2007. CA Cancer J Clin 2007, 57(1):43-66. 10.3322/canjclin.57.1.43, 17237035.
3. Liefers GJ, Tollenaar RA. Cancer genetics and their application to individualised medicine. Eur J Cancer 2002, 38(7):872-879. 10.1016/S0959-8049(02)00055-2, 11978511.
4. Fearon ER, Vogelstein B. A genetic model for colorectal tumorigenesis. Cell 1990, 61(5):759-767. 10.1016/0092-8674(90)90186-I, 2188735.
5. Sjoblom T, Jones S, Wood LD, Parsons DW, Lin J, Barber TD, Mandelker D, Leary RJ, Ptak J, Silliman N. The consensus coding sequences of human breast and colorectal cancers. Science 2006, 314(5797):268-274. 10.1126/science.1133427, 16959974.
6. Wood LD, Parsons DW, Jones S, Lin J, Sjoblom T, Leary RJ, Shen D, Boca SM, Barber T, Ptak J. The genomic landscapes of human breast and colorectal cancers. Science 2007, 318(5853):1108-1113. 10.1126/science.1145720, 17932254.
7. Alon U, Barkai N, Notterman DA, Gish K, Ybarra S, Mack D, Levine AJ. Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc Natl Acad Sci USA 1999, 96(12):6745-6750. 10.1073/pnas.96.12.6745, 21986, 10359783.
8. Williams NS, Gaynor RB, Scoggin S, Verma U, Gokaslan T, Simmang C, Fleming J, Tavana D, Frenkel E, Becerra C. Identification and validation of genes involved in the pathogenesis of colorectal cancer using cDNA microarrays and RNA interference. Clin Cancer Res 2003, 9(3):931-946.
9. Wiemer EA. The role of microRNAs in cancer: no small matter. Eur J Cancer 2007, 43(10):1529-1544. 10.1016/j.ejca.2007.04.002, 17531469.
10. Lee Y, Ahn C, Han J, Choi H, Kim J, Yim J, Lee J, Provost P, Radmark O, Kim S. The nuclear RNase III Drosha initiates microRNA processing. Nature 2003, 425(6956):415-419. 10.1038/nature01957, 14508493.
11. Lee Y, Kim M, Han J, Yeom KH, Lee S, Baek SH, Kim VN. MicroRNA genes are transcribed by RNA polymerase II. Embo J 2004, 23(20):4051-4060. 10.1038/sj.emboj.7600385, 524334, 15372072.
12. Lund E, Guttinger S, Calado A, Dahlberg JE, Kutay U. Nuclear export of microRNA precursors. Science 2004, 303(5654):95-98. 10.1126/science.1090599, 14631048.
13. Yi R, Qin Y, Macara IG, Cullen BR. Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs. Genes Dev 2003, 17(24):3011-3016. 10.1101/gad.1158803, 305252, 14681208.
14. Bernstein E, Caudy AA, Hammond SM, Hannon GJ. Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature 2001, 409(6818):363-366. 10.1038/35053110, 11201747.
15. Hammond SM, Boettcher S, Caudy AA, Kobayashi R, Hannon GJ. Argonaute2, a link between genetic and biochemical analyses of RNAi. Science 2001, 293(5532):1146-1150. 10.1126/science.1064023, 11498593.
16. Nilsen TW. Mechanisms of microRNA-mediated gene regulation in animal cells. Trends Genet 2007, 23(5):243-249. 10.1016/j.tig.2007.02.011, 17368621.
17. Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ. miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res 2006, (34 Database):D140-144. 10.1093/nar/gkj112, 1347474, 16381832.
18. Berezikov E, Guryev V, Belt J, Wienholds E, Plasterk RH, Cuppen E. Phylogenetic shadowing and computational identification of human microRNA genes. Cell 2005, 120(1):21-24. 10.1016/j.cell.2004.12.031, 15652478.
19. Lewis BP, Burge CB, Bartel DP. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 2005, 120(1):15-20. 10.1016/j.cell.2004.12.035, 15652477.
20. Calin GA, Croce CM. MicroRNA signatures in human cancers. Nat Rev Cancer 2006, 6(11):857-866. 10.1038/nrc1997, 17060945.
21. Akao Y, Nakagawa Y, Naoe T. MicroRNAs 143 and 145 are possible common onco-microRNAs in human cancers. Oncol Rep 2006, 16(4):845-850.
22. Bandres E, Cubedo E, Agirre X, Malumbres R, Zarate R, Ramirez N, Abajo A, Navarro A, Moreno I, Monzo M. Identification by Real-time PCR of 13 mature microRNAs differentially expressed in colorectal cancer and non-tumoral tissues. Mol Cancer 2006, 5:29. 10.1186/1476-4598-5-29, 1550420, 16854228.
23. Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E. The colorectal microRNAome. Proc Natl Acad Sci USA 2006, 103(10):3687-3692. 10.1073/pnas.0511155103, 1450142, 16505370.
24. Michael MZ, SM OC, van Holst Pellekaan NG, Young GP, James RJ. Reduced accumulation of specific microRNAs in colorectal neoplasia. Mol Cancer Res 2003, 1(12):882-891.
25. Lanza G, Ferracin M, Gafa R, Veronese A, Spizzo R, Pichiorri F, Liu CG, Calin GA, Croce CM, Negrini M. mRNA/microRNA gene expression profile in microsatellite unstable colorectal cancer. Mol Cancer 2007, 6(1):54. 10.1186/1476-4598-6-54, 2048978, 17716371.
26. Schetter AJ, Leung SY, Sohn JJ, Zanetti KA, Bowman ED, Yanaihara N, Yuen ST, Chan TL, Kwong DL, Au GK. MicroRNA expression profiles associated with prognosis and therapeutic outcome in colon adenocarcinoma. JAMA 2008, 299(4):425-436. 10.1001/jama.299.4.425, 2614237, 18230780.
27. Schepeler T, Reinert JT, Ostenfeld MS, Christensen LL, Silahtaroglu AN, Dyrskjot L, Wiuf C, Sorensen FJ, Kruhoffer M, Laurberg S. Diagnostic and prognostic microRNAs in stage II colon cancer. Cancer Res 2008, 68(15):6416-6424. 10.1158/0008-5472.CAN-07-6110, 18676867.
28. Shingara J, Keiger K, Shelton J, Laosinchai-Wolf W, Powers P, Conrad R, Brown D, Labourier E. An optimized isolation and labeling platform for accurate microRNA expression profiling. Rna 2005, 11(9):1461-1470. 10.1261/rna.2610405, 1370829, 16043497.
29. Chen C, Ridzon DA, Broomer AJ, Zhou Z, Lee DH, Nguyen JT, Barbisin M, Xu NL, Mahuvakar VR, Andersen MR. Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Res 2005, 33(20):e179. 10.1093/nar/gni178, 1292995, 16314309.
30. Huang da W, Sherman BT, Tan Q, Kir J, Liu D, Bryant D, Guo Y, Stephens R, Baseler MW, Lane HC. DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists. Nucleic Acids Res 2007, (35 Web Server):W169-175. 10.1093/nar/gkm415, 1933169, 17576678.
31. Staub E, Grone J, Mennerich D, Ropcke S, Klamann I, Hinzmann B, Castanos-Velez E, Mann B, Pilarsky C, Brummendorf T. A genome-wide map of aberrantly expressed chromosomal islands in colorectal cancer. Mol Cancer 2006, 5:37. 10.1186/1476-4598-5-37, 1601966, 16982006.
32. Akao Y, Nakagawa Y, Naoe T. MicroRNA-143 and -145 in colon cancer. DNA Cell Biol 2007, 26(5):311-320. 10.1089/dna.2006.0550, 17504027.
33. Gusev Y. Computational methods for analysis of cellular functions and pathways collectively targeted by differentially expressed microRNA. Methods 2008, 44(1):61-72. 10.1016/j.ymeth.2007.10.005, 18158134.
34. Provenzani A, Fronza R, Loreni F, Pascale A, Amadio M, Quattrone A. Global alterations in mRNA polysomal recruitment in a cell model of colorectal cancer progression to metastasis. Carcinogenesis 2006, 27(7):1323-1333. 10.1093/carcin/bgi377, 16531451.
35. Lu J, Getz G, Miska EA, Alvarez-Saavedra E, Lamb J, Peck D, Sweet-Cordero A, Ebert BL, Mak RH, Ferrando AA. MicroRNA expression profiles classify human cancers. Nature 2005, 435(7043):834-838. 10.1038/nature03702, 15944708.
36. Volinia S, Calin GA, Liu CG, Ambs S, Cimmino A, Petrocca F, Visone R, Iorio M, Roldo C, Ferracin M. A microRNA expression signature of human solid tumors defines cancer gene targets. Proc Natl Acad Sci USA 2006, 103(7):2257-2261. 10.1073/pnas.0510565103, 1413718, 16461460.
37. Wang Y, Jatkoe T, Zhang Y, Mutch MG, Talantov D, Jiang J, McLeod HL, Atkins D. Gene expression profiles and molecular markers to predict recurrence of Dukes' B colon cancer. J Clin Oncol 2004, 22(9):1564-1571. 10.1200/JCO.2004.08.186, 15051756.
38. Xi Y, Nakajima G, Gavin E, Morris CG, Kudo K, Hayashi K, Ju J. Systematic analysis of microRNA expression of RNA extracted from fresh frozen and formalin-fixed paraffin-embedded samples. RNA 2007, 13(10):1668-1674. 10.1261/rna.642907, 1986820, 17698639.
39. Bates RC, Mercurio AM. The epithelial-mesenchymal transition (EMT) and colorectal cancer progression. Cancer Biol Ther 2005, 4(4):365-370.
40. Mendell JT. miRiad roles for the miR-17-92 cluster in development and disease. Cell 2008, 133(2):217-222. 10.1016/j.cell.2008.04.001, 2732113, 18423194.
41. Paredes-Zaglul A, Kang JJ, Essig YP, Mao W, Irby R, Wloch M, Yeatman TJ. Analysis of colorectal cancer by comparative genomic hybridization: evidence for induction of the metastatic phenotype by loss of tumor suppressor genes. Clin Cancer Res 1998, 4(4):879-886.
42. Rooney PH, Boonsong A, McKay JA, Marsh S, Stevenson DA, Murray GI, Curran S, Haites NE, Cassidy J, McLeod HL. Colorectal cancer genomics: evidence for multiple genotypes which influence survival. Br J Cancer 2001, 85(10):1492-1498. 10.1054/bjoc.2001.2095, 2363933, 11720434.
43. Tsafrir D, Bacolod M, Selvanayagam Z, Tsafrir I, Shia J, Zeng Z, Liu H, Krier C, Stengel RF, Barany F. Relationship of gene expression and chromosomal abnormalities in colorectal cancer. Cancer Res 2006, 66(4):2129-2137. 10.1158/0008-5472.CAN-05-2569, 16489013.