메뉴 건너뛰기




Volumn 18, Issue 23, 2009, Pages 4775-4789

Source-sink dynamics structure a common montane mammal

Author keywords

ADNA; Climate change; Metapopulation; Population structure; Serial coalescent; Serial SimCoal

Indexed keywords

MITOCHONDRIAL DNA;

EID: 70449703318     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2009.04382.x     Document Type: Article
Times cited : (13)

References (61)
  • 1
    • 17444424295 scopus 로고    scopus 로고
    • Serial SimCoal: A population genetics model for data from multiple populations and points in time
    • Anderson CNK, Ramakrishnan U, Chan YL, Hadly EA (2005) Serial SimCoal: a population genetics model for data from multiple populations and points in time. Bioinformatics, 21, 1733 1734.
    • (2005) Bioinformatics , vol.21 , pp. 1733-1734
    • Anderson, C.N.K.1    Ramakrishnan, U.2    Chan, Y.L.3    Hadly, E.A.4
  • 3
    • 0037155601 scopus 로고    scopus 로고
    • Dynamics of Pleistocene population extinctions in Beringian brown bears
    • Barnes I, Matheus P, Shapiro B, Jensen D, Cooper A (2002) Dynamics of Pleistocene population extinctions in Beringian brown bears. Science, 5563, 2267 2269.
    • (2002) Science , vol.5563 , pp. 2267-2269
    • Barnes, I.1    Matheus, P.2    Shapiro, B.3    Jensen, D.4    Cooper, A.5
  • 4
    • 33646253454 scopus 로고    scopus 로고
    • Population size does not influence mitochondrial genetic diversity in animals
    • Bazin E, Glemin S, Galtier N (2006) Population size does not influence mitochondrial genetic diversity in animals. Science, 312, 570 572.
    • (2006) Science , vol.312 , pp. 570-572
    • Bazin, E.1    Glemin, S.2    Galtier, N.3
  • 5
    • 33744466013 scopus 로고    scopus 로고
    • Serial coalescent simulations suggest a weak genealogical relationship between Etruscans and modern Tuscans
    • Belle E, Ramakrishnan UMountainJL, Barbujani G (2006) Serial coalescent simulations suggest a weak genealogical relationship between Etruscans and modern Tuscans. Proceedings of National Academy of Sciences, USA, 103, 8012 8017.
    • (2006) Proceedings of National Academy of Sciences, USA , vol.103 , pp. 8012-8017
    • Belle, E.1    Umountainjl, R.2    Barbujani, G.3
  • 6
    • 33847197928 scopus 로고    scopus 로고
    • Non-random patterns in the Yellowstone ecosystem: Inferences from mammalian body size, order and biogeographical affinity
    • Bruzgul JE, Hadly EA (2006) Non-random patterns in the Yellowstone ecosystem: inferences from mammalian body size, order and biogeographical affinity. Global Ecology and Biogeography, 16, 139 148.
    • (2006) Global Ecology and Biogeography , vol.16 , pp. 139-148
    • Bruzgul, J.E.1    Hadly, E.A.2
  • 8
    • 33646483919 scopus 로고    scopus 로고
    • Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA
    • Chan YL, Anderson CNK, Hadly EA (2006) Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA. Public Library of Science, Genetics, 2, e59 doi :.
    • (2006) Public Library of Science, Genetics , vol.259
    • Chan, Y.L.1    Anderson, C.N.K.2    Hadly, E.A.3
  • 9
    • 0033771358 scopus 로고    scopus 로고
    • Tcs: A computer program to estimate gene genealogies
    • Clement M, Posada D, Crandall K (2000) tcs: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657 1660.
    • (2000) Molecular Ecology , vol.9 , pp. 1657-1660
    • Clement, M.1    Posada, D.2    Crandall, K.3
  • 11
    • 0037356657 scopus 로고    scopus 로고
    • Extensive mtDNA variation within the yellow-pine chipmunk, Tamias amoenus (Rodentia: Sciuridae), and phylogeographic inferences for northwest North America
    • Demboski J, Sullivan J (2003) Extensive mtDNA variation within the yellow-pine chipmunk, Tamias amoenus (Rodentia: Sciuridae), and phylogeographic inferences for northwest North America. Molecular Phylogenetics and Evolution, 26, 389 408.
    • (2003) Molecular Phylogenetics and Evolution , vol.26 , pp. 389-408
    • Demboski, J.1    Sullivan, J.2
  • 12
    • 0030442485 scopus 로고    scopus 로고
    • Sources and sinks in population biology
    • Dias PC (1996) Sources and sinks in population biology. Trends in Ecology and Evolution, 2, 326 329.
    • (1996) Trends in Ecology and Evolution , vol.2 , pp. 326-329
    • Dias, P.C.1
  • 13
    • 0036021407 scopus 로고    scopus 로고
    • Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data
    • Drummond AJ, Nicholls GK, Rodrigo AG, Solomon W (2002) Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. Genetics, 161, 1307 1320.
    • (2002) Genetics , vol.161 , pp. 1307-1320
    • Drummond, A.J.1    Nicholls, G.K.2    Rodrigo, A.G.3    Solomon, W.4
  • 14
    • 4344706338 scopus 로고    scopus 로고
    • Evolutionary history of the arctic ground squirrel (Spermophilus parryi) in Nearctic Beringia
    • Eddingsaas AA, Jacobsen BK, Lessa EP, Cook JA (2004) Evolutionary history of the arctic ground squirrel (Spermophilus parryi) in Nearctic Beringia. Journal of Mammalogy, 85, 601 610.
    • (2004) Journal of Mammalogy , vol.85 , pp. 601-610
    • Eddingsaas, A.A.1    Jacobsen, B.K.2    Lessa, E.P.3    Cook, J.A.4
  • 15
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin, version 3.0: An integrated software package for population genetics data analysis
    • Excoffier L, Laval G, Schneider S (2005) arlequin, version 3.0: an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47 50.
    • (2005) Evolutionary Bioinformatics Online , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 16
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
    • Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics, 131, 479 491.
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 17
    • 0842322955 scopus 로고    scopus 로고
    • Statistical neutrality of mutations against polyphyly: Frequency, causes, and consequences, with insights from animal mitochondrial DNA
    • Fu X (1997) Statistical neutrality of mutations against polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annual Review of Ecology and Systematics, 34, 397 423.
    • (1997) Annual Review of Ecology and Systematics , vol.34 , pp. 397-423
    • Fu, X.1
  • 19
    • 0030357430 scopus 로고    scopus 로고
    • Influence of late-Holocene climate on northern rocky Mountain Mammals
    • Hadly EA (1996) Influence of late-Holocene climate on northern rocky Mountain Mammals. Quaternary Research, 46, 298 310.
    • (1996) Quaternary Research , vol.46 , pp. 298-310
    • Hadly, E.A.1
  • 20
    • 0033153323 scopus 로고    scopus 로고
    • Fidelity of terrestrial vertebrate fossils to a modern ecosystem
    • Hadly EA (1999) Fidelity of terrestrial vertebrate fossils to a modern ecosystem. Palaeogeography, Palaeoclimatology, Palaeoecology, 149, 389 409.
    • (1999) Palaeogeography, Palaeoclimatology, Palaeoecology , vol.149 , pp. 389-409
    • Hadly, E.A.1
  • 21
    • 0037565013 scopus 로고    scopus 로고
    • Ancient DNA evidence of prolonged population persistece with negligible genetic diversity in an endemic Tuco-Tuco
    • Hadly EA, van Tuinen M, Chan Y, Heiman K (2003) Ancient DNA evidence of prolonged population persistece with negligible genetic diversity in an endemic Tuco-Tuco. Journal of Mammalogy, 84, 403 417.
    • (2003) Journal of Mammalogy , vol.84 , pp. 403-417
    • Hadly, E.A.1    Van Tuinen, M.2    Chan, Y.3    Heiman, K.4
  • 22
    • 8844251536 scopus 로고    scopus 로고
    • Genetic response to climatic change: Insights from ancient DNA and phylochronology
    • Hadly EA, Ramakrishnan U, Chan YL et al. (2004) Genetic response to climatic change: insights from ancient DNA and phylochronology. PLoS Biology, 2, 302 319.
    • (2004) PLoS Biology , vol.2 , pp. 302-319
    • Hadly, E.A.1    Ramakrishnan, U.2    Chan, Y.L.3
  • 23
    • 65949114052 scopus 로고    scopus 로고
    • Generic revision in the Holarctic ground squirrel Genus Spermophilus
    • Helgen KM, Cole FR, Helgen LE, Wilson DE (2009) Generic revision in the Holarctic ground squirrel Genus Spermophilus. Journal of Mammalogy, 90, 270 305.
    • (2009) Journal of Mammalogy , vol.90 , pp. 270-305
    • Helgen, K.M.1    Cole, F.R.2    Helgen, L.E.3    Wilson, D.E.4
  • 25
    • 20444427160 scopus 로고    scopus 로고
    • Time dependency of molecular rate estimates and systematic overestimation of recent divergence times
    • Ho SYW, Phillips MJ, Cooper A, Drummond AJ (2005) Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Molecular Evolution Biology, 22, 1561 1568.
    • (2005) Molecular Evolution Biology , vol.22 , pp. 1561-1568
    • Ho, S.Y.W.1    Phillips, M.J.2    Cooper, A.3    Drummond, A.J.4
  • 30
    • 34250862294 scopus 로고    scopus 로고
    • Megafaunal extinctions and the disappearance of a specialized wolf ecomorph
    • Leonard JA, Vilà C, Fox-Dobbs K et al. (2007) Megafaunal extinctions and the disappearance of a specialized wolf ecomorph. Current Biology, 17, 1146 1150.
    • (2007) Current Biology , vol.17 , pp. 1146-1150
    • Leonard, J.A.1    Vilà, C.2    Fox-Dobbs, K.3
  • 31
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald JH, Kreitman M (1991) Adaptive protein evolution at the Adh locus in Drosophila. Nature, 350, 652 654.
    • (1991) Nature , vol.350 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 32
    • 0030613868 scopus 로고    scopus 로고
    • Change in avian abundance across the geographic range in response to environmental change
    • Mehlman D (1997) Change in avian abundance across the geographic range in response to environmental change. Ecological Applications, 7, 614 624.
    • (1997) Ecological Applications , vol.7 , pp. 614-624
    • Mehlman, D.1
  • 33
    • 0020901321 scopus 로고
    • Life histories of mammals: An analysis of life tables
    • Millar JS, Zaummuto RM (1983) Life histories of mammals: an analysis of life tables. Ecology, 63, 631 635.
    • (1983) Ecology , vol.63 , pp. 631-635
    • Millar, J.S.1    Zaummuto, R.M.2
  • 34
    • 1642263452 scopus 로고    scopus 로고
    • Climate change meets habitat fragmentation: Linking landscape and biogeographical scale levels in research and conservation
    • Opdam P, Wascher D (2004) Climate change meets habitat fragmentation: linking landscape and biogeographical scale levels in research and conservation. Biological Conservation, 117, 285 297.
    • (2004) Biological Conservation , vol.117 , pp. 285-297
    • Opdam, P.1    Wascher, D.2
  • 35
    • 0018673755 scopus 로고
    • History and dynamics of glaciation in the northern Yellowstone National Park area
    • Pierce KL (1979) History and dynamics of glaciation in the northern Yellowstone National Park area. U.S. Geological Survey Professional Paper, 729 (F 91.
    • (1979) U.S. Geological Survey Professional Paper , vol.729 , Issue.F , pp. 91
    • Pierce, K.L.1
  • 36
    • 0038265886 scopus 로고    scopus 로고
    • Mapping the origin of faunal assemblages using strontium isotopes
    • Porder SA, Paytan AB, Hadly EA (2003) Mapping the origin of faunal assemblages using strontium isotopes. Paleobiology, 29, 197 204.
    • (2003) Paleobiology , vol.29 , pp. 197-204
    • Porder, S.A.1    Paytan, A.B.2    Hadly, E.A.3
  • 37
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D, Crandall KA (1998) modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817 818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 38
    • 0035139147 scopus 로고    scopus 로고
    • Intraspecific gene genealogies: Trees grafting into networks
    • Posada D, Crandall K (2001) Intraspecific gene genealogies: trees grafting into networks. Trends in Ecology & Evolution, 16, 37 45.
    • (2001) Trends in Ecology & Evolution , vol.16 , pp. 37-45
    • Posada, D.1    Crandall, K.2
  • 39
    • 0024224682 scopus 로고
    • Sources, sinks and population regulation
    • Pulliam RH (1988) Sources, sinks and population regulation. The American Naturalist, 132, 652 661.
    • (1988) The American Naturalist , vol.132 , pp. 652-661
    • Pulliam, R.H.1
  • 40
    • 0026286593 scopus 로고
    • Sources, sinks and habitat selection: A landscape perspective on population dynamics
    • Pulliam RH, Danielson BJ (1991) Sources, sinks and habitat selection: a landscape perspective on population dynamics. The American Naturalist, 137, S50 S66.
    • (1991) The American Naturalist , vol.137
    • Pulliam, R.H.1    Danielson, B.J.2
  • 41
    • 62849103887 scopus 로고    scopus 로고
    • Using phylochronology to reveal cryptic population histories: Review and synthesis of 29 ancient DNA studies
    • Ramakrishnan U, Hadly EA, (2009) Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies. Molecular Ecology, 18, 1310 1330.
    • (2009) Molecular Ecology , vol.18 , pp. 1310-1330
    • Ramakrishnan, U.1    Hadly, E.A.2
  • 42
    • 26944492704 scopus 로고    scopus 로고
    • Detecting past population bottlenecks using temporal genetic data
    • Ramakrishnan U, Hadly EA, Mountain JL (2005) Detecting past population bottlenecks using temporal genetic data. Molecular Ecology, 14, 2915 2922.
    • (2005) Molecular Ecology , vol.14 , pp. 2915-2922
    • Ramakrishnan, U.1    Hadly, E.A.2    Mountain, J.L.3
  • 43
    • 0029178096 scopus 로고
    • An exact test for population differentiation
    • Raymond M, Rousset F (1995) An exact test for population differentiation. Evolution, 49, 1280 1283.
    • (1995) Evolution , vol.49 , pp. 1280-1283
    • Raymond, M.1    Rousset, F.2
  • 44
    • 0023511216 scopus 로고
    • Unita ground squirrels demography: Is body mass a better categorical variable than age?
    • Sauer JR, Slade NA (1987) Unita ground squirrels demography: is body mass a better categorical variable than age? Ecology, 68, 642 650.
    • (1987) Ecology , vol.68 , pp. 642-650
    • Sauer, J.R.1    Slade, N.A.2
  • 45
    • 0034350427 scopus 로고    scopus 로고
    • Gaps as characters in sequence-based phylogenetic analyses
    • Simmons MP, Ochoterena H (2000) Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology, 49, 369 381.
    • (2000) Systematic Biology , vol.49 , pp. 369-381
    • Simmons, M.P.1    Ochoterena, H.2
  • 46
    • 0000076676 scopus 로고
    • Population ecology of Uinta ground squirrels
    • Slade NA, Balph DF (1974) Population ecology of Uinta ground squirrels. Ecology, 55, 989 1003.
    • (1974) Ecology , vol.55 , pp. 989-1003
    • Slade, N.A.1    Balph, D.F.2
  • 47
    • 0037474496 scopus 로고    scopus 로고
    • Proxy climatic and environmental changes of the past 1000 years
    • Soon W, Baliunas S (2003) Proxy climatic and environmental changes of the past 1000 years. Climate Research, 23, 89 110.
    • (2003) Climate Research , vol.23 , pp. 89-110
    • Soon, W.1    Baliunas, S.2
  • 48
    • 34047218882 scopus 로고    scopus 로고
    • The molecular basis of high-altitude adaptation in deer mice
    • 0448-045
    • Storz JF, Sabatino SJ, Hoffmann FG et al. (2007) The molecular basis of high-altitude adaptation in deer mice. PLoS Genetics, 3, e45, 0448-045
    • (2007) PLoS Genetics , vol.3 , pp. 45
    • Storz, J.F.1    Sabatino, S.J.2    Hoffmann, F.G.3
  • 51
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F (1989a) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585 595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 52
    • 0024762773 scopus 로고
    • The effect of change in population size on DNA polymorphism
    • Tajima F (1989b) The effect of change in population size on DNA polymorphism. Genetics, 123, 597 601.
    • (1989) Genetics , vol.123 , pp. 597-601
    • Tajima, F.1
  • 53
    • 3342920601 scopus 로고    scopus 로고
    • Prospects for inferring very large phylogenies by using the neighbor-joining method
    • Tamura K, Nei M, Kumar S (2004) Prospects for inferring very large phylogenies by using the neighbor-joining method. Proceedings of the National Academy of Sciences, USA, 101, 11030 11035.
    • (2004) Proceedings of the National Academy of Sciences, USA , vol.101 , pp. 11030-11035
    • Tamura, K.1    Nei, M.2    Kumar, S.3
  • 54
    • 41149097143 scopus 로고    scopus 로고
    • Fire and ice: Genetic structure of the Uinta Ground Squirrel (Spermophilus armatus) across the Yellowstone Hotspot
    • van Tuinen M, O'Keefe K, Ramakrishnan U, Hadly EA (2008) Fire and ice: genetic structure of the Uinta Ground Squirrel (Spermophilus armatus) across the Yellowstone Hotspot. Molecular Ecology, 17, 1776 1788.
    • (2008) Molecular Ecology , vol.17 , pp. 1776-1788
    • Van Tuinen, M.1    O'Keefe, K.2    Ramakrishnan, U.3    Hadly, E.A.4
  • 55
    • 37249061678 scopus 로고    scopus 로고
    • Staying out in the cold: Glacial refugia and mitochondrial DNA phylogeography in ancient European brown bears
    • Valdiosera CE, Nuria G, Anderung C et al. (2007) Staying out in the cold: glacial refugia and mitochondrial DNA phylogeography in ancient European brown bears. Molecular Ecology, 16, 5140 5148.
    • (2007) Molecular Ecology , vol.16 , pp. 5140-5148
    • Valdiosera, C.E.1    Nuria, G.2    Anderung, C.3
  • 57
    • 0033301767 scopus 로고    scopus 로고
    • Biogeographic patterns in Mediterranean and Macaronesian species of Saxifraga (Saxifragaceae) inferred from phylogenetic analyses of ITS sequences
    • Vargas P, Morton CM, Jury SL (1999) Biogeographic patterns in Mediterranean and Macaronesian species of Saxifraga (Saxifragaceae) inferred from phylogenetic analyses of ITS sequences. American Journal of Botany, 86, 724 734.
    • (1999) American Journal of Botany , vol.86 , pp. 724-734
    • Vargas, P.1    Morton, C.M.2    Jury, S.L.3
  • 58
    • 0034049585 scopus 로고    scopus 로고
    • Nuclear DNA microsatellite analysis of genetic diversity and gene flow in the Scandinavian brown bear (Ursus arctos)
    • Waits L, Taberlet P, Swenson JE et al. (2000) Nuclear DNA microsatellite analysis of genetic diversity and gene flow in the Scandinavian brown bear (Ursus arctos). Molecular Ecology, 9, 421 431.
    • (2000) Molecular Ecology , vol.9 , pp. 421-431
    • Waits, L.1    Taberlet, P.2    Swenson, J.E.3
  • 60
    • 44849122679 scopus 로고    scopus 로고
    • A comparison of phylogenetic network methods using computer simulation
    • doi:.
    • Woolley SM, Posada D, Keith A, Crandall KA (2008) A comparison of phylogenetic network methods using computer simulation. PLoS ONE, 3, e1913 doi :.
    • (2008) PLoS ONE , vol.3 , pp. 1913
    • Woolley, S.M.1    Posada, D.2    Keith, A.3    Crandall, K.A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.